TCONS_00015992 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015992
Unique NameTCONS_00015992
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length801

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015992 ID=TCONS_00015992|Name=TCONS_00015992|organism=Clytia hemisphaerica|type=transcript|length=801bp
AAGACACTAAGCTCCTTTTATTCACGTGGGACAATGAGCAGCACAGGCTC
CGCAGGTGCACCTGAATTTCAACTCCACCATGGATTCGTTGACAAAATTT
GGTCAGACTGGCAAAAGTTGAGCCCCGCGAATCTGAATGCATACTTCCCT
GGCATAAACACTCGAATGACTGCTACGAACTATTATCCAAGAGATTTGAT
TGATTTGACTAAACAACCAGGATGTGTAAGAGTGTGTTATGAAGATCCAA
CAATTAACAGTGGAAAAAGAGTCAAAACTTTCTTGCAAAGTCTTTCACCG
TCACAACTTTCAAGATTACCCAGAATGCCATTCACAGCGACCACAAAAGC
AGACAACGACCGATTCGGAGTATCAAAAGCAGACCGTGCTCTTGCTAAGC
GACTGGAAGCTATTGGCAGAAGAGGCGTGCTTCGTGGCAGATCAGCAAGA
ATAAATTTCAAGACTCAATTGGAGCGAACACTAGGATTCCAATTGATTGC
ACCACCACACATCCGCCCAATCCGACCGATCGGCCCTATAAGACCACCCG
GCCGACCACGACCACCAGCTCCAGGTGGTTTTAAATCAAGCTTGGCAGAA
GATGAAGTCGTGACAGAGCTGGATCTTGAAGCTGGAAATGCCAAGGATTT
TGTTGAAGAGCAAGATGGTATGAATTCAAACTATGCCGAAAAGGAGAACC
TGGAATTTgctaggctgcatgcatccccaaattagttttgatatagggga
tgcgaatcaggctctgatatcgcttccgagaaaattaccgaatagctatg
T
Run BLAST on NCBI

transcript from alignment at sc0000224:53562..56157-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015992 ID=TCONS_00015992|Name=TCONS_00015992|organism=Clytia hemisphaerica|type=transcript|length=2596bp|location=Sequence derived from alignment at sc0000224:53562..56157- (Clytia hemisphaerica)
AAGACACTAAGCTCCTTTTATTCACGTAAACAGAAGTATATTTTTGTCCT
TTAAAATAATTCATAGAGAACTATCCATTTATAGCTTTATACTTAATTCA
TAACACATTGGCATAAATATTTTGCTAAAACATATACGAACCGAAAGGAC
GTTTGAGTGCCGTCAAACTGAAATCTGAAAAACTTGTACATTTGAAAGAA
ATGTTCCTCCCATCTAGTTTTTATACAGCTGCTAAAGATATTCATCGAAT
TTTCCACAGTTGGAAAAATTTAATTTTTTTTAATTTAATTACACGTGGTT
CATGGAATGTATACATATTATTGCTGTTGTATCTCGTTAGCAAGTTTATG
TACTTGTACTTTTGAGGGCGACGGTGTGACTGAAGCGATTTGGAGCAACA
CCCAGTTTTGACCCACAAATAAAGGATGGTAAAAGTACTGATTTACCGTC
GTCCTCAGTCATTTAGGATCTAGGCAAATCAGTCAGAAAAATCGTCTCCG
TCGCAGAAAACAACCATACATAAACTCGCTAATAACTCTTTTTAGGTGGG
ACAATGAGCAGCACAGGCTCCGCAGGTGCACCTGAATTTCAACTCCACCA
TGGATTCGTTGACAAAATTTGGTCAGACTGGCAAAAGTTGAGCCCCGCGA
ATCTGAATGCATACTTCCCTGGCATAAACACTCGAATGACTGCTACGAAC
TATTATCCAAGAGATTTGATTGATTTGACTAAACAACCAGGATGTGTAAG
AGTGTGTTATGAAGATCCAACAATTAACAGTGGAAAAAGAGTCAAAACTT
TCTTGCAAAGTAAGGAATACCATTGTGTACATTTTTTCTTGAAATGTTAA
TTACACTTTTTTTATAAGAACATCTAAAAATTTTGCGAAGCCTTGTTCTT
AACTTTTCGGGTTTCAAGCCTAAAAACATGTTCTTATTTGGACCATTTTT
TGAGTATTTTTGTTCATTTTTATAAGAAAACAGGTGTTTTAGAGCCCGCA
AAGCCTTAAAATGTTCTTAACTTCTTTTTAAGATTTCGGCCACCGAAGCC
TTTTGTTCTTATATAGTTTGTTCTTATATAAAAAAACGTGTATGCGATGT
TAAAAAGGTTATTTGTTCACATTAACATCCAACGCTTTTTTAAAGGGGTT
TCTTAGGTTTTTTAAAAGTAGGAAATGGTTTAATAATAATATTCAATTCT
ATAATTGAAGAAAATACAACAAACCCAATGATTCTGAACTTTACAAGTCA
CCCACCACTAAAGGGTACTTTGAGGAACGATTACCGAGTGGTAATCAGCA
TGGCACCAGCGCCACAAATCATAAGTTTCTGGTTTAAATCCCCGCTCCTT
CATATGTTCCTCTGTTCCTTTTTGTTAGTAGATAGCCTGCCAGATGCCCG
TGGACCCGGTTAAAAGTCCTAGATCACTAGGCTATCTACGTAAAATATTG
ACTCTTTACTTTAATCATCCTTCAACATCCTTCTCATTCCAATAGGTCTT
TCACCGTCACAACTTTCAAGATTACCCAGAATGCCATTCACAGCGACCAC
AAAAGCAGACAACGACCGATTCGGAGTATCAAAAGCAGACCGTGCTCTTG
CTAAGCGACTGGAAGCTATTGGCAGAAGAGGTAAGTCTTAGCTCTAGTTT
AGACGCCCTACNACGACTGGAAGCCATTGGTAGAAGAGGTAAGCCTTATT
CAAACTTGCACCACGAAAAACTGGGTTCAAATAATAATGATGGTACTTAG
GGAGGATTTTTCTTGAGATGGTGTTGAAGTTTTTTGATTCCATTCTGTCT
TAATTTTTTGGTTTGGTTTACTGTTTATCGTGTTGGTATAATGATGGTAC
TTTCTGTAACCGCGATCATGATAAGAGAAAAAGAGAGAGAGAAGTGAACC
CTCCGAATCATCCGGAATGGGCCCTTCCCCTGGATAGATACCTACCCTAG
GATAGGGAAATTACCACGCTTACCGAACACTGCGAACCCTGCACTCGCGC
ACGACAGAGTTACGATGATACCCGAACTACAAGGAACCATGATAAATTCT
AAGAAATTTGAAATATAATTTACAGGGCTATAATTCATAGGACATTACTA
TACCTCAAATAACTTAACTAGAAAATATCGGTTTCATTTGTTTATGTTAA
AAAAACTCAGTTTGAAACCAATAAAAAAAGACTTTATTTAGTGAGTCAAT
TTATGTCTCTTTTCTTTAGGCGTGCTTCGTGGCAGATCAGCAAGAATAAA
TTTCAAGACTCAATTGGAGCGAACACTAGGATTCCAATTGATTGCACCAC
CACACATCCGCCCAATCCGACCGATCGGCCCTATAAGACCACCCGGCCGA
CCACGACCACCAGCTCCAGGTGGTTTTAAATCAAGCTTGGCAGAAGATGA
AGTCGTGACAGAGCTGGATCTTGAAGCTGGAAATGCCAAGGATTTTGTTG
AAGAGCAAGATGGTATGAATTCAAACTATGCCGAAAAGGAGAACCTGGAA
TTTGCTAGGCTGCATGCATCCCCAAATTAGTTTTGATATAGGGGATGCGA
ATCAGGCTCTGATATCGCTTCCGAGAAAATTACCGAATAGCTATGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008933XLOC_008933Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015992-exon-sc0000224-1575043694:56133..56157TCONS_00015992-exon-sc0000224-1575043694:56133..56157Clytia hemisphaericaexon
TCONS_00015992-exon-sc0000224-1575043694:55349..55612TCONS_00015992-exon-sc0000224-1575043694:55349..55612Clytia hemisphaericaexon
TCONS_00015992-exon-sc0000224-1575043694:54528..54662TCONS_00015992-exon-sc0000224-1575043694:54528..54662Clytia hemisphaericaexon
TCONS_00015992-exon-sc0000224-1575043694:53562..53938TCONS_00015992-exon-sc0000224-1575043694:53562..53938Clytia hemisphaericaexon
TCONS_00015992-exon-sc0000224-1510915933:56133..56157TCONS_00015992-exon-sc0000224-1510915933:56133..56157Clytia hemisphaericaexon
TCONS_00015992-exon-sc0000224-1510915933:55349..55612TCONS_00015992-exon-sc0000224-1510915933:55349..55612Clytia hemisphaericaexon
TCONS_00015992-exon-sc0000224-1510915933:54528..54662TCONS_00015992-exon-sc0000224-1510915933:54528..54662Clytia hemisphaericaexon
TCONS_00015992-exon-sc0000224-1510915933:53562..53938TCONS_00015992-exon-sc0000224-1510915933:53562..53938Clytia hemisphaericaexon
TCONS_00015992-exon-sc0000224-1491911889:56133..56157TCONS_00015992-exon-sc0000224-1491911889:56133..56157Clytia hemisphaericaexon
TCONS_00015992-exon-sc0000224-1491911889:55349..55612TCONS_00015992-exon-sc0000224-1491911889:55349..55612Clytia hemisphaericaexon
TCONS_00015992-exon-sc0000224-1491911889:54528..54662TCONS_00015992-exon-sc0000224-1491911889:54528..54662Clytia hemisphaericaexon
TCONS_00015992-exon-sc0000224-1491911889:53562..53938TCONS_00015992-exon-sc0000224-1491911889:53562..53938Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000224supercontigsc0000224:53562..56157 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.129029	0	0	0.086583	0.085227	0.23074	1.24548	0.207445	0.59385	0.0813296	0.659881	0.21334	0.615073	0.496646	0.350808	0.569784	1.14262	1.25172	0.202145	0	0.279758	0.368936	0.139228	0	1.21639e-05	1.85427	0	0.0993625	0.0790039	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00015992 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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