TCONS_00015988 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015988
Unique NameTCONS_00015988
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length532

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015988 ID=TCONS_00015988|Name=TCONS_00015988|organism=Clytia hemisphaerica|type=transcript|length=532bp
CCAAACTTACacaaaaaaaagattctttccaCTGAACCTTTTCCTTAAAA
GTTGTTTCACGAAGATAAAAATCTTATGATTTCAATATCTGAAAATTATG
GGAAGACATatgattaaaaatcaaaattctctTGAGATGCATCAAAGAGA
AAAGGAAGATGACACCCTTGAAATTGAGGAAGCCGACATGTCCAGTCATG
GTTCAGTTATTTCACATCTCATTTCTCAAGTCAAAATTGGTATGGATCTA
ACAAAGGTCACGCTACCAACCTTTATATTGGAAAGACGTTCGCTATTGGA
AATGTATGCTGACTTCTTTGCGCATCCAGACCTCTTTAAAGGAATTCCAG
ACTTAGACGATGCAGGAGATCGGATGCTTCAAGTTTTGAAATGGTATCTT
TCGTCCTTTCACGCTGGTCGTAAGaGTACAGTAGCAAAAAAACCATACAA
CCCAATCCTTGGTGAAACATTCCAGTGTTTCTTTGATTTGACGGATGACC
CAAACTACGGAAAAGACGAGGTACGGTACAAC
Run BLAST on NCBI

transcript from alignment at sc0000224:396345..402568+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015988 ID=TCONS_00015988|Name=TCONS_00015988|organism=Clytia hemisphaerica|type=transcript|length=6224bp|location=Sequence derived from alignment at sc0000224:396345..402568+ (Clytia hemisphaerica)
CCAAACTTACacaaaaaaaagattctttccaCTGAACCTTTTCCTTAAAA GTTGTTTCACGAAGATAAAAATCTTATGATTTCAATATCTGAAAATTATG GGAAGACATatgattaaaaatcaaaattctctTGAGATGCATCAAAGAGA AAAGGAAGATGACACCCTTGAAATTGAGGAAGGTTAGTTTAATATCTGCT CGTGGAAGTTATGAATATATTCCAAATCTTGAGAATGGTGGGGCTTACCT TGGTTGGTATAATTTACATGTTTCcctcactgacctttatataccctgga ccaagcttctcaatcccagccacgcaaaatctttgatcggagtttttaga aaagtggtaccctaatggcggcactactcgatagcggtgtaaatgcatcg agagcgctaggtctacttttcctcaaattcctTTTATGATGTAGCgacgt tagacgttaatttttaacattgcaattccaaaaaaactccaatcaaagat ggcggatattgcttggtccTGGGATAtttaaaggtcagtggtttCCCTAA AGGAAAAGGCGAACTACTCCAACCAAAAACCATAAAAATCGTCAATGTTG CCCTTTTTCCGTCGGTGATATTggtgtttgaaaaaaagtgtcaaAGTGTT TCGGTGTCAAACTTGCTACGTGGTGAAGAAATAAGGATCTTAGGAACTTT TTGATGTCGTTGTTGACGTTGAACTAAGAAAAAttcgtcggtatttcggt gctCCTGACCCATGTATGTCCCTCCCTTTTTTAATACACGGGTTTTTGAA CACTTTGATGGTCTGCAATGTTTTTAtgtgttttgatttaaattatCAAA TGACGTCAGTTCTTTGAAACGGCACTGCAATGACTTGATGTTATGTCTTC CTAGATTTCTGGTTGAAATACTTACATACGATACGGTGCCGAGGAAAGAC ATTGTTCGTCTTGTACATACAAGTTCTCAAACTGCCAAGAATccctttta ttacttttttggacctaccccggtggggtggaggtcctataaattaaccc atgttcgttagttagttagttaccagcttttctcgagattggctcattag ttttNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgagattggct cattagttttttctgatttttggcacaaaggtgcatgaccataaaccctc gaatgtgacggagcccgattttcgaaaaaaaaatcttttgggcaaaattg ggccaaaaaacggcttaaaaacgggttttttggactttgtgaaaaattga atcatttattttttctgatttttagcatgaaagtagtACAATCATAgcta aaagatggctcaagcagatttttgcaaaaaaatctttttggctcaaaaat tgcatttttatctataagaaaccacttttaataagaatacatcaatgttc ttagccatattattattattattatttttattagtttttttaagatgaaa atgtcacggtggagggtaatgatttgagttttctacaaacacttattatt tttttggctaaaaaacgaatctttatctttaagaatcaccaattataagc atagatcaatgttcttagccaaattattattttattattattttttctaa acaaagaaatgtcaccttagagcgcgatgatttgagttttctgtaaacac ttattatttttttggctgaaaaacgaatttttatctataagaatcactat ttataagcaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNtgttcttagccaaattattattttattattattttttctaaacaatga aaatgtcaccttagagcgcgatggtttgagttttctgtaaacacttatta ttttttaggctgaaaaacgaatctttatctataagaatcactatttatga aGTTCAtgcatagatcaatgttattagccaaattatttttttatcattac tttttctaacagaagaaaatgtcacggtagagtgcgatggtttgagtttt ctggaaaccttatttattaagctgtgcatttttctgatagtggtttttac aaagaaaagcgcttaatagcttttttatttatttttcaaaaatctttttc aacagTGTcgatagtttctctcaatagatatgctttcattttctttattt ttttgtgtattttgacccagttatgtcttatgtgtttcattgtttcaatg ttcactgattagtttgataaccaggtacacgtttttttttttattagaac acctaaaatttggctgagcctggatgtgcttatttttttaggaattttca gcctaaaatgttcttaaatgcgttcttaatctTTCAGACTATtgtaaatc gacaatatgatacaaaataaagagcacttaaatttggcaaaatttggaca atatttgacactcgattttgaagatccacccctaaattcggttaaaactg cttaaaaagaggaagaaattgtagtttcttgtcatttttttccatactga ggctgggcatgttcttaagatgttcttaatttttcgacgaatatcagcct atatgttcttataaactagggtctaataaaaaaaaaaacgtgtaggtcca taaaagtatcgcttgttatAACCAGAAAGAACCCCTTGCATTGCGtttct gacgtcaaaaagaaattatatcAACCGACTCTCTCAAGCTTGATCAGGTC GGAGTAAACATCCTACTTTGAAGAATCTTTATTTTTGACGAGTTATCGTT TGAAATTAAATGTTAATATTCCCTTGCTCTTTTCTTTCGTTTCCAGCCGA CATGTCCAGTCATGGTTCAGTTATTTCACATCTCATTTCTCAAGTCAAAA TTGGTATGGATCTAACAAAGGTATGTAAATAGTATTTCTTGTCTTTTTCT CTAGaaactttgatttttctaaCAGGAGCTCCTTAAGGGATAATTTCATG GATATTTACGGCGTTCCTAAAATCTTACATTGGTTTTTCATTCACTGATT CTGTGTgagtgtgacgtcattttcacctAAAATCAGCCATTTACCTACAA AATGGTAGAATGAATATCTATGTACAGAATGATTTAGTAACATTTTGATA GCTCAGAATATTTCCTGTTATTTCCCGTTGTTAGTTAGGAGCAGGCAGCT TGCTTAAGGTTTGCTTGAAGATAGTCCCTAACTGGATGTTGGCGAATCGG TCTATAGGCAGGGATTTAAGTAGTAACGCCTGCTGGGGGTACCTACCTAA CATTCAGGGGCTTCCTAAGCTGTTATTCCATGCCATGCTGTCCATGATAA ATAAGTGCAGTAGTTATCAAAATGATATTTCTGTATATCTACCTCAGGTC ACGCTACCAACCTTTATATTGGAAAGACGTTCGCTATTGGAAATGTATGC TGACTTCTTTGCGCATCCAGACCTCTTTAAAGGGTAAGACGTGATCGAAT TCCCCGCAAAATTAATTCTTTTgagtcatccgccaaattaaattcccccA ATCCTTTCAAACCCCTCCCCCTTCCTCGGAACATTTTTTAAAGAGTCACA ATCGTTCAAGAAAGTTTAGCCCCCTCCAAGTGATAAGGGGAGGGTACTTT CTTTTCATCATGAATAAAATGGGAATAAATGAGAGGTTCTCTAAAAATTT GTCACTTTTAAGTTTTGAAGTTTGAACTAGAGTACAAGGTCCATAGGAAA GAAAACgaggtttttctttatttactttaGAATTCCAGACTTAGACGATG CAGGAGATCGGATGCTTCAAGTTTTGAAATGGTATCTTTCGTCCTTTCAC GCTGGTCGTAAGGTGagaatattttgttgtttttttccaaaaaacactAG GAAGATCTCAAAACTCAATGCCAAAGATGATGAAAGTTCTTCCGTTCGAG GCAAATTTTCATCCCACTgacaccatagtataagaaagccgcggctggaa tatgtaccacattttcttttcagttaattgctgttccatctctgtctccg agctttataagaacatcaagatgctcagtttattattggtagatagtttt tgaaattgttctcttattttccttcaaaaaaagtttttttattgctagat atctttgaatctgtaccaaatagaacacttgaactaatttttgacatatt ataggggtattttgtggaaactatagtttttcgccaaaactgaaattata agaactatattcaagatgacaactctcctgtcagtttgaatgaggaattt tgaaggtgctggcttgaaattttcacagtattattttgatgtactttttc attgatttctaaaataatttcactgaaatattgcgaaagcattcgaggca ctttattaatttttgagttctttcagcccagccattttgtgcttgtttaa atttcttatttttgatctttcctttacaatgattttataatgcaagtgta ttatcaagggcatgtCATTAGTGTCTAAAACGCGCtaagaagtaagtatt aacgacaaaccgataaaatttaccattaaagatgctacataactaatttc ttgatcaacaaatagtcatcaaaNcttgcattataaaattatCAAGGGCA TGTCATTAGTGTCTAAAACGCGCtaagaagtaagtattaacgacaaaccg ataaaatttaccattaaagatgctacataactaatttcttgatcaacaaa tagtcatcaaatacgacagagatagaacaagagaaattcagatgttatca ttccagccgcggctttcttatactatgctgaCACTAAGCCTTTTccatct caaaataaaatcagtcaattcaaaagacaatacaatacaataagCTCCAT GCCTCTAATTCGACTTCCATATAGATTATTATATCATATAGACCGATGTt gaagttcgagttaaagaaagattcgagtaacagtagttcgaattagagag agttggtTATATGccctaattttggaaaatttgcatTGACAACTGTCATA AAGTGTAATAcaattgactctctctaattcgatcttcatgggatcaaaca tttcattcgaattaaagaaaaatttggaACACATGGAGTAATTTAAACTC TCTTTCACCTGAAGGCGACCAATATATTATGAGTTCGAGTTACAGAAAGA TTTGattaatagaagttcgaattatagtgAGTTGACTGTACGACCTAATT GGGAAACATTCATACTTAGTCCGTTTCACATGTGATACTGTACACTAGCC ACTTTCATAATGTAATCTAGACTGACCACACTGTCATTGTAACTCTACAC TGACCACACTGTCATTGTAACTCTACACTAGCCACACTGTCATTGTAACT CTACACTGACCACACTGTCATTGTAACTCTACACTGACCACACTGTCATT GTAACTCTACACTGACCACACTGTCATTGTAACTCTACACTGACCACACT GTCATTGTAACTCTACATTGACCACACTGTCATTGTAACTCTACACTGGC CACCACGCTGTCATTGTAACTCTACACTGGCCACACTGTCATTGTAACTC CACACTGGCCACACTGTCATTGTAACTCCACACTGGCCACACTGTCATTG TAACTCCACACTGGCCACACTGTCATTGTAACTCCACACTGGCCACACTG TCATTGTAACTCTACACTGGCCAAACTGTCATTGTAACTCTACACTGGCC ACACTGTCATTGTAACTCTACACTGACCACACTGTCATTGTAACTCTACA CTGGCCACACTGTCATTGTAACTCTACACTGGCCACCACGCTGTCATTGT AACTCTACACTGGCCACACTGTCATTGTAACTCTACACTGGCCACACTGT CATTGTAACTCTACACTGGCCACACTGTCATTGTAACTCTACATTGGCCA CGCTGTCATTGTAACTCTACACTGGCCACACTGTAATAGTaatcctgttt ttttttcacattttagaGTACAGTAGCAAAAAAACCATACAACCCAATCC TTGGTGAAACATTCCAGTGTTTCTTTGATTTGACGGATGACCCAAACTAC GGAAAAGACGAGGTACGGTACAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008929XLOC_008929Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015988-exon-sc0000224-1491911889:396345..396526TCONS_00015988-exon-sc0000224-1491911889:396345..396526Clytia hemisphaericaexon
TCONS_00015988-exon-sc0000224-1510915933:396345..396526TCONS_00015988-exon-sc0000224-1510915933:396345..396526Clytia hemisphaericaexon
TCONS_00015988-exon-sc0000224-1575043694:396345..396526TCONS_00015988-exon-sc0000224-1575043694:396345..396526Clytia hemisphaericaexon
TCONS_00015988-exon-sc0000224-1491911889:399291..399364TCONS_00015988-exon-sc0000224-1491911889:399291..399364Clytia hemisphaericaexon
TCONS_00015988-exon-sc0000224-1510915933:399291..399364TCONS_00015988-exon-sc0000224-1510915933:399291..399364Clytia hemisphaericaexon
TCONS_00015988-exon-sc0000224-1575043694:399291..399364TCONS_00015988-exon-sc0000224-1575043694:399291..399364Clytia hemisphaericaexon
TCONS_00015988-exon-sc0000224-1491911889:399842..399927TCONS_00015988-exon-sc0000224-1491911889:399842..399927Clytia hemisphaericaexon
TCONS_00015988-exon-sc0000224-1510915933:399842..399927TCONS_00015988-exon-sc0000224-1510915933:399842..399927Clytia hemisphaericaexon
TCONS_00015988-exon-sc0000224-1575043694:399842..399927TCONS_00015988-exon-sc0000224-1575043694:399842..399927Clytia hemisphaericaexon
TCONS_00015988-exon-sc0000224-1491911889:400225..400306TCONS_00015988-exon-sc0000224-1491911889:400225..400306Clytia hemisphaericaexon
TCONS_00015988-exon-sc0000224-1510915933:400225..400306TCONS_00015988-exon-sc0000224-1510915933:400225..400306Clytia hemisphaericaexon
TCONS_00015988-exon-sc0000224-1575043694:400225..400306TCONS_00015988-exon-sc0000224-1575043694:400225..400306Clytia hemisphaericaexon
TCONS_00015988-exon-sc0000224-1491911889:402461..402568TCONS_00015988-exon-sc0000224-1491911889:402461..402568Clytia hemisphaericaexon
TCONS_00015988-exon-sc0000224-1510915933:402461..402568TCONS_00015988-exon-sc0000224-1510915933:402461..402568Clytia hemisphaericaexon
TCONS_00015988-exon-sc0000224-1575043694:402461..402568TCONS_00015988-exon-sc0000224-1575043694:402461..402568Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000224supercontigsc0000224:396345..402568 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.379406 0 0.583181 0.841508 3.85825 0 4.50854 3.83096 2.90014 1.49188 5.12619 1.22599 1.13889 0.799753 0.755732 0.315192 1.9013 2.69678 4.371 15.7089 4.54765 8.55485 0.964734 1.66412 46.7393 19.738 0.418627 0 0 0.642973
Blast
BLAST of TCONS_00015988 vs. Swiss-Prot (Human)
Match: OSBL9 (Oxysterol-binding protein-related protein 9 OS=Homo sapiens GN=OSBPL9 PE=1 SV=2)

HSP 1 Score: 169.088 bits (427), Expect = 7.828e-49
Identity = 78/108 (72.22%), Postives = 88/108 (81.48%), Query Frame = 2
Query:  176 EEADMSSHGSVISHLISQVKIGMDLTKVTLPTFILERRSLLEMYADFFAHPDLFKGIPDLDDAGDRMLQVLKWYLSSFHAGRKSTVAKKPYNPILGETFQCFFDLTDD 499
            E   +  H SVI HL+SQV++GMDLTKV LPTFILERRSLLEMYADFFAHPDLF  I D  D  DRM+QV+KWYLS+FHAGRK +VAKKPYNPILGE FQC + L +D
Sbjct:  364 EAGSVEEHKSVIMHLLSQVRLGMDLTKVVLPTFILERRSLLEMYADFFAHPDLFVSISDQKDPKDRMVQVVKWYLSAFHAGRKGSVAKKPYNPILGEIFQCHWTLPND 471          
The following BLAST results are available for this feature:
BLAST of TCONS_00015988 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
OSBL97.828e-4972.22Oxysterol-binding protein-related protein 9 OS=Hom... [more]
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