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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015988 ID=TCONS_00015988|Name=TCONS_00015988|organism=Clytia hemisphaerica|type=transcript|length=532bp CCAAACTTACacaaaaaaaagattctttccaCTGAACCTTTTCCTTAAAA GTTGTTTCACGAAGATAAAAATCTTATGATTTCAATATCTGAAAATTATG GGAAGACATatgattaaaaatcaaaattctctTGAGATGCATCAAAGAGA AAAGGAAGATGACACCCTTGAAATTGAGGAAGCCGACATGTCCAGTCATG GTTCAGTTATTTCACATCTCATTTCTCAAGTCAAAATTGGTATGGATCTA ACAAAGGTCACGCTACCAACCTTTATATTGGAAAGACGTTCGCTATTGGA AATGTATGCTGACTTCTTTGCGCATCCAGACCTCTTTAAAGGAATTCCAG ACTTAGACGATGCAGGAGATCGGATGCTTCAAGTTTTGAAATGGTATCTT TCGTCCTTTCACGCTGGTCGTAAGaGTACAGTAGCAAAAAAACCATACAA CCCAATCCTTGGTGAAACATTCCAGTGTTTCTTTGATTTGACGGATGACC CAAACTACGGAAAAGACGAGGTACGGTACAAC Run BLAST on NCBI transcript from alignment at sc0000224:396345..402568+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00015988 ID=TCONS_00015988|Name=TCONS_00015988|organism=Clytia hemisphaerica|type=transcript|length=6224bp|location=Sequence derived from alignment at sc0000224:396345..402568+ (Clytia hemisphaerica) CCAAACTTACacaaaaaaaagattctttccaCTGAACCTTTTCCTTAAAA
GTTGTTTCACGAAGATAAAAATCTTATGATTTCAATATCTGAAAATTATG
GGAAGACATatgattaaaaatcaaaattctctTGAGATGCATCAAAGAGA
AAAGGAAGATGACACCCTTGAAATTGAGGAAGGTTAGTTTAATATCTGCT
CGTGGAAGTTATGAATATATTCCAAATCTTGAGAATGGTGGGGCTTACCT
TGGTTGGTATAATTTACATGTTTCcctcactgacctttatataccctgga
ccaagcttctcaatcccagccacgcaaaatctttgatcggagtttttaga
aaagtggtaccctaatggcggcactactcgatagcggtgtaaatgcatcg
agagcgctaggtctacttttcctcaaattcctTTTATGATGTAGCgacgt
tagacgttaatttttaacattgcaattccaaaaaaactccaatcaaagat
ggcggatattgcttggtccTGGGATAtttaaaggtcagtggtttCCCTAA
AGGAAAAGGCGAACTACTCCAACCAAAAACCATAAAAATCGTCAATGTTG
CCCTTTTTCCGTCGGTGATATTggtgtttgaaaaaaagtgtcaaAGTGTT
TCGGTGTCAAACTTGCTACGTGGTGAAGAAATAAGGATCTTAGGAACTTT
TTGATGTCGTTGTTGACGTTGAACTAAGAAAAAttcgtcggtatttcggt
gctCCTGACCCATGTATGTCCCTCCCTTTTTTAATACACGGGTTTTTGAA
CACTTTGATGGTCTGCAATGTTTTTAtgtgttttgatttaaattatCAAA
TGACGTCAGTTCTTTGAAACGGCACTGCAATGACTTGATGTTATGTCTTC
CTAGATTTCTGGTTGAAATACTTACATACGATACGGTGCCGAGGAAAGAC
ATTGTTCGTCTTGTACATACAAGTTCTCAAACTGCCAAGAATccctttta
ttacttttttggacctaccccggtggggtggaggtcctataaattaaccc
atgttcgttagttagttagttaccagcttttctcgagattggctcattag
ttttNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgagattggct
cattagttttttctgatttttggcacaaaggtgcatgaccataaaccctc
gaatgtgacggagcccgattttcgaaaaaaaaatcttttgggcaaaattg
ggccaaaaaacggcttaaaaacgggttttttggactttgtgaaaaattga
atcatttattttttctgatttttagcatgaaagtagtACAATCATAgcta
aaagatggctcaagcagatttttgcaaaaaaatctttttggctcaaaaat
tgcatttttatctataagaaaccacttttaataagaatacatcaatgttc
ttagccatattattattattattatttttattagtttttttaagatgaaa
atgtcacggtggagggtaatgatttgagttttctacaaacacttattatt
tttttggctaaaaaacgaatctttatctttaagaatcaccaattataagc
atagatcaatgttcttagccaaattattattttattattattttttctaa
acaaagaaatgtcaccttagagcgcgatgatttgagttttctgtaaacac
ttattatttttttggctgaaaaacgaatttttatctataagaatcactat
ttataagcaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNtgttcttagccaaattattattttattattattttttctaaacaatga
aaatgtcaccttagagcgcgatggtttgagttttctgtaaacacttatta
ttttttaggctgaaaaacgaatctttatctataagaatcactatttatga
aGTTCAtgcatagatcaatgttattagccaaattatttttttatcattac
tttttctaacagaagaaaatgtcacggtagagtgcgatggtttgagtttt
ctggaaaccttatttattaagctgtgcatttttctgatagtggtttttac
aaagaaaagcgcttaatagcttttttatttatttttcaaaaatctttttc
aacagTGTcgatagtttctctcaatagatatgctttcattttctttattt
ttttgtgtattttgacccagttatgtcttatgtgtttcattgtttcaatg
ttcactgattagtttgataaccaggtacacgtttttttttttattagaac
acctaaaatttggctgagcctggatgtgcttatttttttaggaattttca
gcctaaaatgttcttaaatgcgttcttaatctTTCAGACTATtgtaaatc
gacaatatgatacaaaataaagagcacttaaatttggcaaaatttggaca
atatttgacactcgattttgaagatccacccctaaattcggttaaaactg
cttaaaaagaggaagaaattgtagtttcttgtcatttttttccatactga
ggctgggcatgttcttaagatgttcttaatttttcgacgaatatcagcct
atatgttcttataaactagggtctaataaaaaaaaaaacgtgtaggtcca
taaaagtatcgcttgttatAACCAGAAAGAACCCCTTGCATTGCGtttct
gacgtcaaaaagaaattatatcAACCGACTCTCTCAAGCTTGATCAGGTC
GGAGTAAACATCCTACTTTGAAGAATCTTTATTTTTGACGAGTTATCGTT
TGAAATTAAATGTTAATATTCCCTTGCTCTTTTCTTTCGTTTCCAGCCGA
CATGTCCAGTCATGGTTCAGTTATTTCACATCTCATTTCTCAAGTCAAAA
TTGGTATGGATCTAACAAAGGTATGTAAATAGTATTTCTTGTCTTTTTCT
CTAGaaactttgatttttctaaCAGGAGCTCCTTAAGGGATAATTTCATG
GATATTTACGGCGTTCCTAAAATCTTACATTGGTTTTTCATTCACTGATT
CTGTGTgagtgtgacgtcattttcacctAAAATCAGCCATTTACCTACAA
AATGGTAGAATGAATATCTATGTACAGAATGATTTAGTAACATTTTGATA
GCTCAGAATATTTCCTGTTATTTCCCGTTGTTAGTTAGGAGCAGGCAGCT
TGCTTAAGGTTTGCTTGAAGATAGTCCCTAACTGGATGTTGGCGAATCGG
TCTATAGGCAGGGATTTAAGTAGTAACGCCTGCTGGGGGTACCTACCTAA
CATTCAGGGGCTTCCTAAGCTGTTATTCCATGCCATGCTGTCCATGATAA
ATAAGTGCAGTAGTTATCAAAATGATATTTCTGTATATCTACCTCAGGTC
ACGCTACCAACCTTTATATTGGAAAGACGTTCGCTATTGGAAATGTATGC
TGACTTCTTTGCGCATCCAGACCTCTTTAAAGGGTAAGACGTGATCGAAT
TCCCCGCAAAATTAATTCTTTTgagtcatccgccaaattaaattcccccA
ATCCTTTCAAACCCCTCCCCCTTCCTCGGAACATTTTTTAAAGAGTCACA
ATCGTTCAAGAAAGTTTAGCCCCCTCCAAGTGATAAGGGGAGGGTACTTT
CTTTTCATCATGAATAAAATGGGAATAAATGAGAGGTTCTCTAAAAATTT
GTCACTTTTAAGTTTTGAAGTTTGAACTAGAGTACAAGGTCCATAGGAAA
GAAAACgaggtttttctttatttactttaGAATTCCAGACTTAGACGATG
CAGGAGATCGGATGCTTCAAGTTTTGAAATGGTATCTTTCGTCCTTTCAC
GCTGGTCGTAAGGTGagaatattttgttgtttttttccaaaaaacactAG
GAAGATCTCAAAACTCAATGCCAAAGATGATGAAAGTTCTTCCGTTCGAG
GCAAATTTTCATCCCACTgacaccatagtataagaaagccgcggctggaa
tatgtaccacattttcttttcagttaattgctgttccatctctgtctccg
agctttataagaacatcaagatgctcagtttattattggtagatagtttt
tgaaattgttctcttattttccttcaaaaaaagtttttttattgctagat
atctttgaatctgtaccaaatagaacacttgaactaatttttgacatatt
ataggggtattttgtggaaactatagtttttcgccaaaactgaaattata
agaactatattcaagatgacaactctcctgtcagtttgaatgaggaattt
tgaaggtgctggcttgaaattttcacagtattattttgatgtactttttc
attgatttctaaaataatttcactgaaatattgcgaaagcattcgaggca
ctttattaatttttgagttctttcagcccagccattttgtgcttgtttaa
atttcttatttttgatctttcctttacaatgattttataatgcaagtgta
ttatcaagggcatgtCATTAGTGTCTAAAACGCGCtaagaagtaagtatt
aacgacaaaccgataaaatttaccattaaagatgctacataactaatttc
ttgatcaacaaatagtcatcaaaNcttgcattataaaattatCAAGGGCA
TGTCATTAGTGTCTAAAACGCGCtaagaagtaagtattaacgacaaaccg
ataaaatttaccattaaagatgctacataactaatttcttgatcaacaaa
tagtcatcaaatacgacagagatagaacaagagaaattcagatgttatca
ttccagccgcggctttcttatactatgctgaCACTAAGCCTTTTccatct
caaaataaaatcagtcaattcaaaagacaatacaatacaataagCTCCAT
GCCTCTAATTCGACTTCCATATAGATTATTATATCATATAGACCGATGTt
gaagttcgagttaaagaaagattcgagtaacagtagttcgaattagagag
agttggtTATATGccctaattttggaaaatttgcatTGACAACTGTCATA
AAGTGTAATAcaattgactctctctaattcgatcttcatgggatcaaaca
tttcattcgaattaaagaaaaatttggaACACATGGAGTAATTTAAACTC
TCTTTCACCTGAAGGCGACCAATATATTATGAGTTCGAGTTACAGAAAGA
TTTGattaatagaagttcgaattatagtgAGTTGACTGTACGACCTAATT
GGGAAACATTCATACTTAGTCCGTTTCACATGTGATACTGTACACTAGCC
ACTTTCATAATGTAATCTAGACTGACCACACTGTCATTGTAACTCTACAC
TGACCACACTGTCATTGTAACTCTACACTAGCCACACTGTCATTGTAACT
CTACACTGACCACACTGTCATTGTAACTCTACACTGACCACACTGTCATT
GTAACTCTACACTGACCACACTGTCATTGTAACTCTACACTGACCACACT
GTCATTGTAACTCTACATTGACCACACTGTCATTGTAACTCTACACTGGC
CACCACGCTGTCATTGTAACTCTACACTGGCCACACTGTCATTGTAACTC
CACACTGGCCACACTGTCATTGTAACTCCACACTGGCCACACTGTCATTG
TAACTCCACACTGGCCACACTGTCATTGTAACTCCACACTGGCCACACTG
TCATTGTAACTCTACACTGGCCAAACTGTCATTGTAACTCTACACTGGCC
ACACTGTCATTGTAACTCTACACTGACCACACTGTCATTGTAACTCTACA
CTGGCCACACTGTCATTGTAACTCTACACTGGCCACCACGCTGTCATTGT
AACTCTACACTGGCCACACTGTCATTGTAACTCTACACTGGCCACACTGT
CATTGTAACTCTACACTGGCCACACTGTCATTGTAACTCTACATTGGCCA
CGCTGTCATTGTAACTCTACACTGGCCACACTGTAATAGTaatcctgttt
ttttttcacattttagaGTACAGTAGCAAAAAAACCATACAACCCAATCC
TTGGTGAAACATTCCAGTGTTTCTTTGATTTGACGGATGACCCAAACTAC
GGAAAAGACGAGGTACGGTACAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00015988-exon-sc0000224-1491911889:396345..396526 | TCONS_00015988-exon-sc0000224-1491911889:396345..396526 | Clytia hemisphaerica | exon |
TCONS_00015988-exon-sc0000224-1510915933:396345..396526 | TCONS_00015988-exon-sc0000224-1510915933:396345..396526 | Clytia hemisphaerica | exon |
TCONS_00015988-exon-sc0000224-1575043694:396345..396526 | TCONS_00015988-exon-sc0000224-1575043694:396345..396526 | Clytia hemisphaerica | exon |
TCONS_00015988-exon-sc0000224-1491911889:399291..399364 | TCONS_00015988-exon-sc0000224-1491911889:399291..399364 | Clytia hemisphaerica | exon |
TCONS_00015988-exon-sc0000224-1510915933:399291..399364 | TCONS_00015988-exon-sc0000224-1510915933:399291..399364 | Clytia hemisphaerica | exon |
TCONS_00015988-exon-sc0000224-1575043694:399291..399364 | TCONS_00015988-exon-sc0000224-1575043694:399291..399364 | Clytia hemisphaerica | exon |
TCONS_00015988-exon-sc0000224-1491911889:399842..399927 | TCONS_00015988-exon-sc0000224-1491911889:399842..399927 | Clytia hemisphaerica | exon |
TCONS_00015988-exon-sc0000224-1510915933:399842..399927 | TCONS_00015988-exon-sc0000224-1510915933:399842..399927 | Clytia hemisphaerica | exon |
TCONS_00015988-exon-sc0000224-1575043694:399842..399927 | TCONS_00015988-exon-sc0000224-1575043694:399842..399927 | Clytia hemisphaerica | exon |
TCONS_00015988-exon-sc0000224-1491911889:400225..400306 | TCONS_00015988-exon-sc0000224-1491911889:400225..400306 | Clytia hemisphaerica | exon |
TCONS_00015988-exon-sc0000224-1510915933:400225..400306 | TCONS_00015988-exon-sc0000224-1510915933:400225..400306 | Clytia hemisphaerica | exon |
TCONS_00015988-exon-sc0000224-1575043694:400225..400306 | TCONS_00015988-exon-sc0000224-1575043694:400225..400306 | Clytia hemisphaerica | exon |
TCONS_00015988-exon-sc0000224-1491911889:402461..402568 | TCONS_00015988-exon-sc0000224-1491911889:402461..402568 | Clytia hemisphaerica | exon |
TCONS_00015988-exon-sc0000224-1510915933:402461..402568 | TCONS_00015988-exon-sc0000224-1510915933:402461..402568 | Clytia hemisphaerica | exon |
TCONS_00015988-exon-sc0000224-1575043694:402461..402568 | TCONS_00015988-exon-sc0000224-1575043694:402461..402568 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000224 | supercontig | sc0000224:396345..402568 + |
Blast
BLAST of TCONS_00015988 vs. Swiss-Prot (Human)
Match: OSBL9 (Oxysterol-binding protein-related protein 9 OS=Homo sapiens GN=OSBPL9 PE=1 SV=2) HSP 1 Score: 169.088 bits (427), Expect = 7.828e-49 Identity = 78/108 (72.22%), Postives = 88/108 (81.48%), Query Frame = 2
Query: 176 EEADMSSHGSVISHLISQVKIGMDLTKVTLPTFILERRSLLEMYADFFAHPDLFKGIPDLDDAGDRMLQVLKWYLSSFHAGRKSTVAKKPYNPILGETFQCFFDLTDD 499
E + H SVI HL+SQV++GMDLTKV LPTFILERRSLLEMYADFFAHPDLF I D D DRM+QV+KWYLS+FHAGRK +VAKKPYNPILGE FQC + L +D
Sbjct: 364 EAGSVEEHKSVIMHLLSQVRLGMDLTKVVLPTFILERRSLLEMYADFFAHPDLFVSISDQKDPKDRMVQVVKWYLSAFHAGRKGSVAKKPYNPILGEIFQCHWTLPND 471
The following BLAST results are available for this feature:
|