Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015985 ID=TCONS_00015985|Name=TCONS_00015985|organism=Clytia hemisphaerica|type=transcript|length=7735bpRun BLAST on NCBI protein sequence of TCONS_00015985-protein >TCONS_00015985-protein ID=TCONS_00015985-protein|Name=TCONS_00015985-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1602bp MGKRLHIIFSILYIGLICCVAVQGAAPEITTPSQEKTRLTHKTGDQLQFQRun BLAST on NCBI transcript from alignment at sc0000224:276493..309599+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00015985 ID=TCONS_00015985|Name=TCONS_00015985|organism=Clytia hemisphaerica|type=transcript|length=33107bp|location=Sequence derived from alignment at sc0000224:276493..309599+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000224:276493..309599+ >TCONS_00015985 ID=TCONS_00015985|Name=TCONS_00015985|organism=Clytia hemisphaerica|type=CDS|length=144270bp|location=Sequence derived from alignment at sc0000224:276493..309599+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2 Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00015985 vs. Swiss-Prot (Human)
Match: PTPRF (Receptor-type tyrosine-protein phosphatase F OS=Homo sapiens GN=PTPRF PE=1 SV=2) HSP 1 Score: 559.681 bits (1441), Expect = 5.699e-164 Identity = 281/572 (49.13%), Postives = 364/572 (63.64%), Query Frame = 3 Query: 3195 ANSDHGIQTEYESVRIPVHSFTWENSQMSGNLSKNRYGNIVAYDHSRVMLNQIDNDPYSTYINANFINGYQQQKKFIAAQGPLPETVLDFWRMVWEQNTATIVMLTRLVEDNKVKCEQYWPEGKALQYGSIVVTVNSVSEMTDYTVRVFTLHKVNSPEMGKREVRQYHYMSWPDHGVPGHPTSMLSFVRHVMGDMKNRRQEGPVVVHCSAGVGRTGTFIAIETGLRQIEHDQTVDIYGTVCRMRMQRNFMVQIEGQYKFIYVSLLDSVICGNTEIEPSELVGKIRYLNLVDPKTGKTNFHEEFKRLETGMTSTDYTHSDAGHTENKQKNRYLNILPYDHNRVKLMPIAGSRSSDYINASMIDGFQQKNAFIATQAPLENTVIDFWRMIQEKNVHTIVMLTKLVERDQDKCYLYWPQAGTVSYGATHVEME---NIRQEDENIIVHDLRISNRETGKSWQIKHFMYTGWPDSGSPTTGTEFINLIGSIQRTQLSVQSGGPTLVHCSGGVGRTGVFITVYNTIDKLRSNNVIDIFHTIRQLRLQRVAMCQTLDQYIFCHNALKDYLDSFDLYAN 4901 AN EYES+ P FTWENS + N KNRY N++AYDHSRV+L ID P S YINAN+I+GY++Q +IA QGPLPET+ DFWRMVWEQ TAT+VM+TRL E ++VKC+QYWP G I VT+ E+ YTVR F LHK S E KRE+RQ+ +M+WPDHGVP +PT +L+F+R V N GP+VVHCSAGVGRTG FI I+ L +++H++TVDIYG V MR QRN+MVQ E QY FI+ +LL++ CG+TE+ L I+ L V P T EFK L + T S A NK KNR +NI+PY+ RV L PI G SDYINAS +DG++Q+ A+IATQ PL + DFWRM+ E N IVMLTKL E ++KC+ YWP + Y V+ N+ Q I+ + ++++ G+S I+ F +T WP+ G P TG FI+ IG + +T+ GP VHCS GVGRTGVFIT+ ++++R V+D+F T++ LR QR AM QT DQY C+ A +YL SFD YA Sbjct: 1346 ANDGLKFSQEYESID-PGQQFTWENSNLEVNKPKNRYANVIAYDHSRVILTSIDGVPGSDYINANYIDGYRKQNAYIATQGPLPETMGDFWRMVWEQRTATVVMMTRLEEKSRVKCDQYWPARGTETCGLIQVTLLDTVELATYTVRTFALHKSGSSE--KRELRQFQFMAWPDHGVPEYPTPILAFLRRVKA--CNPLDAGPMVVHCSAGVGRTGCFIVIDAMLERMKHEKTVDIYGHVTCMRSQRNYMVQTEDQYVFIHEALLEAATCGHTEVPARNLYAHIQKLGQVPPGESVTAMELEFKLLASSKAHTSRFIS-ANLPCNKFKNRLVNIMPYELTRVCLQPIRGVEGSDYINASFLDGYRQQKAYIATQGPLAESTEDFWRMLWEHNSTIIVMLTKLREMGREKCHQYWPAERSARYQYFVVDPMAEYNMPQ----YILREFKVTDARDGQSRTIRQFQFTDWPEQGVPKTGEGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVLERMRYEGVVDMFQTVKTLRTQRPAMVQTEDQYQLCYRAALEYLGSFDHYAT 1907 HSP 2 Score: 116.701 bits (291), Expect = 1.577e-25 Identity = 182/801 (22.72%), Postives = 311/801 (38.83%), Query Frame = 3 Query: 378 KNKTTSTLKIETLDLDNRGEYKCEASNADG----SVERLY-DVAIFELSFVTKPDNEYVIPAGNVLRIDSTVRGHPKPIASWKLNNVHVRALNNTRIYHIERLSPDNYTLNSALIINNATARDTGNVSVVFHYMMGSISTSSFLTVLDFKLALEASDLSKNSATININNHKFDEKSTHPGYSIELILYSIKSGQTTEIKRQNLGDNPPSWALDSLEAGTQYNVSGQEKVGTFAGDVIGI-------------TFTTEEDTPSAPENVIVTEVQSTSFVVAWDTPKMPNGNITNYEVVYKXXXXXXXXXXXXXXXXXQIM--VPNLAPDTVYFIKVQASTLVGSGPYSEQLTVRT----PIEMGNLKISTFKTGNDSAQLRLSDHQFAKQSPDYFVVLKLYSIISNVESEVRNLTLNEIASDSLVNLTNLMPYTTYK--VTGQENSGEHKVIXXXXXXXXXQSAPSAPVN-IQAKSISANYFIITWEKPLKP--NGIIRQYEIRYSFYDGANTVEETVSISDTDTLEKKLDGLYSFVKYTVEIRAQTVDFGPYNSSE---VTTLESQP-GAPSKVTVEDVNGTNIIVRWE-PLPPYQRG--------------GVLXXXXXXXXXXXXDENYKTVSPDKSSIELSGLSAYKGYEIKVQALTENHQGKITAVTHKTLEAAPSVPNEITIKMNRQISNNEKGHVAIHTALVSWKEPTDLNGVITAYQIRWWKDAYCVGDDNPCNFTQTDKKRRRRSTLNFRYILVNLTVSNKPKDRERRVTIDGLLAYTKYGFNVQEKTKAGWG 2636 K + L+IE+ + ++G+Y+C A+N+ G + LY V F P ++ V+P G+V + G P P W + E L+ ++ ++ + + N + V +G I ++ +TV L DL T +D ++ P + Y I+ + G P +D + A T+Y++ G +A V+ + T E+ S P V + +++ +V W+ P+ PNG + Y V Y + ++ ++ V +L P Y ++V A T VG GP S + V+T P + + + +++LS + + ++ +L + E + +T + +S L +L P T Y+ + + + G V T T T QS PSAP + S+ + ++W P NG+I QY + Y DG + V + L GL + +Y V +RA T D GP S V T E P G P KV VE +N T + V W+ P+P Q G G I + ++ + +SGL+ Y + V A T G + K + +VP T+ ++ A++TAL+ W P +L G + Y+++ YC D+ R +T++F KD ++ T+ GL T Y F + K +AG G Sbjct: 185 KQLRSGALQIESSEESDQGKYECVATNSAGTRYSAPANLYVRVRRVAPRFSIPPSSQEVMPGGSV-NLTCVAVGAPMPYVKWMMG--------------AEELTKEDEMPVGRNVLELSNVVRSANYTCVAISSLGMIEATAQVTVK--ALPKPPIDLVVTETTATSVTLTWDSGNSEP-----VTYYGIQY--------RAAGTEGPFQEVDGV-ATTRYSIGGLSPFSEYAFRVLAVNSIGRGPPSEAVRARTGEQAPSSPPRRVQARMLSASTMLVQWEPPEEPNGLVRGYRVYYTPDSRRPPNAWHKHNTDAGLLTTVGSLLPGITYSLRVLAFTAVGDGPPSPTIQVKTQQGVPAQPADFQAEV----ESDTRIQLS---WLLPPQERIIMYELVYWAAEDEDQQHKVTFDPTSS---YTLEDLKPDTLYRFQLAARSDMGV-GVFTPTIEARTAQSTPSAPPQKVMCVSMGSTTVRVSWVPPPADSRNGVITQYSVAYEAVDGEDRGRHVVDGISREHSSWDLVGLEKWTEYRVWVRAHT-DVGPGPESSPVLVRTDEDVPSGPPRKVEVEPLNSTAVHVYWKLPVPSKQHGQIRGYQVTYVRLENGEPRGLPIIQDVMLAEAQWRPEESEDYETTISGLTPETTYSVTVAAYTTKGDGARSK--PKIVTTTGAVPGRPTMMIST---------TAMNTALLQWHPPKELPGELLGYRLQ-----YCRADEA------------RPNTIDFG------------KD-DQHFTVTGLHKGTTYIFRLAAKNRAGLG 901 The following BLAST results are available for this feature:
BLAST of TCONS_00015985 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|