TCONS_00015980 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015980
Unique NameTCONS_00015980
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1317

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015980 ID=TCONS_00015980|Name=TCONS_00015980|organism=Clytia hemisphaerica|type=transcript|length=1317bp
gaaaatttgcatgtcggatatatacgacatcggcaagtagagtgaaaatt
tgcatgtcggatatatacgacatcggcacggaaagggCTAGACAGAAACA
GTtgcagaaaacttttgaaattttttcattgtagTTACCGTAGTAACTTG
ACAGTGACAAAAATCGTTTTGTTGAGATTTCTCTGAGGTGGGTGGGCCAT
TTGAAACAAagttcctattagcagattcgtAACAAAGTTACGAATAAACG
TCGAGTTAAAGCTCTgatctttttgcattttttcagCATGTTAGGGTTTA
ATTCGGTCTGATATTGCTATTTTGCAGATGATGTGACTTTATTTCTTATA
TTATTTAAACATTTCTTACTTTAGTTTAATATTACATTTACTGGTGATTT
CAAAGACTTGAAAAGgggaatttttttggaaaaaaagtatcaagtggatc
tctgaatcaGTAAAAATGCAGACGTTTTTAACGATTTTCACGTTTGTGGT
ACCAGAATGATTAATTCTACTCAGCTTTATAAGCGTATTATCAGGGGAAA
AGATTCGACTCCCGGAGAAATTCCATGGATGGTAGCCATTATGATTGATG
GAGAGTATCGTTGTGGAGGAACTTTGATCAGTAAAAAATGGGTTATCTCA
GCTGCACACTGTAACATCTACAGTGGTGACACTTTAATTCTTGGAGCATA
TGACATTGATGTGACCATTAAAGAAGAATTCAACTCAAGACAAGTTCGAA
AAGCAAAGAAAGTGATAAATAATGAACAACATGACATCCCATTTCTGAAT
TCAAACGATATTGCATTAATTGAACTAGATTTTGAAGTAAAATTTGATCG
CTATGTTAGACCTGCGTGTGTAGTTGGAAGTAATCAGCGCCCATTTGATG
GCTCTGAAGTTACGATATCTGGATGGGGATTAAGATTGCAAAGGTCCAAA
AATGTTCTCCAAAAAGTTGAGGTTAATGTTATGGGTGATGCTGAGTGTAC
TTCAAAGTATTCTAGAGAATATCATATTGACAGTTCGATGATATGTGCAG
CTGCTCCTGGAAAAGACGCATGTCAACAAGATAGCGGTGGCCCACTTGTT
GCAGAGTTAAAGGAGCCGAGTGAGACTGGACAGTTTTATTTGGTTGGCGT
TGTCAGTTGGGCTAAAGGATGTGCAGATCCAAGATATCCTGGAGTTTATA
CAAATATAGCTCACTTGAGAATTTGGATAGAAGAAAACTTAGCTAAAAAT
CATGTATTTCCAGCATCAATTAACCAGACATTGGCAtacaaataagTAAA
GATCATTTCAATTTGTG
Run BLAST on NCBI

protein sequence of TCONS_00015980-protein

>TCONS_00015980-protein ID=TCONS_00015980-protein|Name=TCONS_00015980-protein|organism=Clytia hemisphaerica|type=polypeptide|length=262bp
MINSTQLYKRIIRGKDSTPGEIPWMVAIMIDGEYRCGGTLISKKWVISAA
HCNIYSGDTLILGAYDIDVTIKEEFNSRQVRKAKKVINNEQHDIPFLNSN
DIALIELDFEVKFDRYVRPACVVGSNQRPFDGSEVTISGWGLRLQRSKNV
LQKVEVNVMGDAECTSKYSREYHIDSSMICAAAPGKDACQQDSGGPLVAE
LKEPSETGQFYLVGVVSWAKGCADPRYPGVYTNIAHLRIWIEENLAKNHV
FPASINQTLAYK
Run BLAST on NCBI

transcript from alignment at sc0000224:220547..229358+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015980 ID=TCONS_00015980|Name=TCONS_00015980|organism=Clytia hemisphaerica|type=transcript|length=8812bp|location=Sequence derived from alignment at sc0000224:220547..229358+ (Clytia hemisphaerica)
gaaaatttgcatgtcggatatatacgacatcggcaagtagagtgaaaatt
tgcatgtcggatatatacgacatcggcacggaaagggCTAGACAGAAACA
GTtgcagaaaacttttgaaattttttcattgtagTTACCGTAGTAACTTG
ACAGTGACAAAAATCGTTTTGTTGAGATTTCTCTGAGGTGGGTGGGCCAT
TTGAAACAAagttcctattagcagattcgtAACAAAGTTACGAATAAACG
TCGAGTTAAAGCTCTgatctttttgcattttttcagCATGTTAGGGTTTA
ATTCGGTCTGATATTGCTATTTTGCAGATGATGTGACTTTATTTCTTATA
TTATTTAAACATTTCTTACTTTAGTTTAATATTACATTTACTGGTGATTT
CAAAGACTTGAAAAGgggaatttttttggaaaaaaagtatcaagtggatc
tctgaatcaGTACATGTTTCTTAATCCTCTTTTTATGACAGAATTTTATT
TGAGAAGTGACGTGCCAATAccatattattttcatcaaaattataataca
cccctgtgtcacagacccgctgaaACCCAAGactcactggaaaatttggc
ctaaatttcatccccggtggaaaaaaaacCCTCCAATTTCAACACCACTT
GGAtattaactttgatttcatccaaaTCCGgaattcaatataaaaattgC
AACCGAAAACCATTCGCACTTGATTTTTCGACTTAAGAGCAATAGAACTT
TTTATCCCCATAGGTATTTCGATAGAAGAATTTAACCCCGCTATGGGAAT
AACTTTGACTGGGGATGTGAGACAGTGGTGTTATAATTGTCGAAAAACCT
AATCGTTCTGGAGTTAAAATTGGGAAGGAAATGAACacttattaaatatt
tcccgttttccaaaagggaaatatttattaaaacgggctttctccataat
ttcccgtgtcaaaacgccttccgtacgccctgactgacgcccgtttttaa
tTTGACAGCGAAAAATGCGGAAAGTGATATATACTATCCGTAGATCTaac
acgattttttttcttatccGTAATTCCGttttcagggggtattgggtcat
taacagttaggtagggtcagggttgctagtaacggcttgtcactgtgccg
ggtgcgtACTCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgctgtg
cgagtgtggctcaacggatagcgtgATGGCTTCCGAATTCGAAGGTCTTT
CTttagtggtggttcgaatccgacccggtgcgatgatttgattggtcgat
aaatgattgacaggtatcaaaacttagtcagaaatgagaaactaagtctc
aaacAGTCAGTAGAAGCAAAGATACAgaagaaagataggaaaggaaAAGG
AGTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNcgcaattt
tgcgattcttgtcttctttttcaaatcttCTTGTCATGACCCTTTTAAAT
TTGCCACCTATCACAGtgtattaaatatttcatattAGGAAACCCTTTTA
TtcatttctgaaaatattttcagctatcaaAAGCTGAATTGCTCTAAATT
ACCTGATTTTAGCTTAAAATTACCAACTTTGGTGATTTTGGAGGTACAAT
ATAGGGCCCCTCTTTTATTCGGATCCCTCCACTTTTTGGAGTATTcgatt
ttttgttgttgaaactCAAAACAATTTCTATCATTAGGTAAAAATGCAGA
CGTTTTTAACGATTTTCACGTTTGTGGTACCAGAATGATTAATTCTACTC
AGCTTTATAAGCGTATTATCAGGGGAAAAGATTCGACTCCCGGAGAAATT
CCATGGATGGTAGCCATTATGATTGATGGAGAGTATCGTTGTGGAGGAAC
TTTGATCAGTAAAAAATGGGTTATCTCAGCTGCACACTGTAACATCTACA
GTGGTGACACTTTAATTCTTGGAGCATATGACATTGATGTGACCATTAAA
GAAGGTAATGGACTCCGGGAATGGACTACAGTCATTATTAACACGTGTTA
AAGCACCCCTGTATCAAAGGCCCTCCTGGACCCAAGCTCAACTGGGAAAA
AAATCTGTTTCCATTGGGAATCTTAACCTACACTTTCAGCAACAGTGgga
aattgattttaatttcatccccattttggaattgaaggGAAGAAGTTGCA
CTCCAAAAttatccccactggatttttcaaCTTAGGAACAATATTATTCT
TATCCAATCTCCATTGTGGGGAAAATTCGCACCGGGGCTATGAGAGAGGG
GTGTGTTCGACAGTTACATAAGTGATGATAATATACTTAAGTTTTAACGA
CTGAAAGAACCCAGTGCTCGTGACGAGGTCctattttcttttagtttttc
ttACTACCATACTTTTATCTTAGACATCGAATCTGCTGGACTTTGAAACT
AAAAGTTTGACCTGGTAAGATGAGACGAGGATAAATATTGCTGAGAGAAT
ATGTTAACACTAACATTATTTTTAGGCAAATTCTCTCCCCATCACTTCCA
GCTCATTTTTCCACGTAACATTTTTCCAAGCCCAGTTGGTTTGTCAGTCT
AATGAAATTgatacttttttctcaaatcccAGAATTCAACTCAAGACAAG
TTCGAAAAGCAAAGAAAGTGATAAATAATGAACAACATGACATCCCATTT
CTGAATTCAAACGATATTGCATTAATTGAACTAGATTTTGAAGTAAAATT
TGATCGCTATGTTAGACCTGCGTGTGTAGTTGGAAGTAATCAGCGCCCAT
TTGATGGCTCTGAAGTTACGATATCTGGATGGGGATTAAGATTGCAAAGG
TCCAAAAATGTTCTCCAAAAAGTTGAGGTAAGtatgggtgggtgggtgtt
tgaaCGGCTTTTTAAgtgttaatttttttgtaaaaactcGAAATATCAat
agtttttcttttctaatatCAGAATACCTGTACaaaatgttatatatttt
tttgcgaTAGGCTGTCACATAATATTCAGAAATACCACTGGctgaaattc
aaaatatacGGATTTTTAAATGCTTAAgaagaaaatgttgaatttGAACA
TCGTTTGCAGACATCACTTGGGCCTAaatactcaagatttttatttcatt
cagGTTAATGTTATGGGTGATGCTGAGTGTACTTCAAAGTATTCTAGAGA
ATATCATATTGACAGTTCGATGATATGTGCAGCTGCTCCTGGAAAAGACG
CATGTCAAGTgagtaccgtattacttcgaataaacgccttcTTCTTTTAA
ACACCGCCCTCGAATAAAAGCCCCTCCTAAAGTCCATGCTCCTGGAAAAG
ACGCTTGTCAAGCGAGtaccgtattactttgaatcttcgaataaacgccc
ccttcttttaaacaccctcctcgaataaacgcccttcctgaaatccaaaa
aatttagTAAACGCCCTGGACGTTTATTCGAAATAATACGGTATTTACTA
AACTTTAAATGGATAAAAATTGTATGAAGGGCACAGGTATGTGTCACCAA
TAAGAGTATACCTTTTTAGATCTTTGAAATCTTGCAAAGGGTCGTACAAG
CCATAAAATATAACCTTAGTCTccctaagggttacaaaaaaggaaaaatt
tcaaaatttcggaTTTTTGTCCAGGATATTTGTTCCTCAATGGCTAAATT
TTGGTTTCACcttaaaattttcgatttttaaaaacattcacTTACCCATA
ATCCGGCAAAACTATGCCCCCGGAAAGGAAattgaaaagtcaaaatttaa
tcaatgtataaagttttgaatttatcGACACTTTGATGGAATTGGATAAG
AATCATATCAGAcgccagctggcacacaacgttttttcaacgttagatga
acgttaaaacaacgttttgtgccagctgggacgcTTGGGAGGGCCGCTTT
AAAAATCTATTTCGACCATAAATCTTTCATCGTGGACATATAAAACGACT
GGACGCCTATCTTCTATTGCGTCTTTGTAgtgagcttcgttgccgcctgt
atttcaaaatagaTCCGACAAAATTCCGtcacaattttatttctttgaat
tagtTAGGTAAAAGGATCGagagagcttgaacattactcgtaATTCACAA
GAGAATAGTTCTCTAATTTTTAtaaagtttgcaatatattttatcaacat
ttttatcgctgaaatgcttttttcaacttttgaatcacttttatcattcc
aacaatttttttatgatttgaaaaaaatagtatgcAAAATAGTCGAGAAC
CTGCGagtcataagaatatcataatttgaatctcacacactctaaaatta
tttcacacttttgagtcaaaatttagaaattcggaattttgacaagctga
cgatgattttgcctctgttatcttttttaTGCTGTAAATataagacttga
gaagagtagaacatcagagacttttgtcgaagtttggACGTTGCTAGCAA
GGTTttcccaagaggtatatcatcaaaatctattgtttcattttatgttt
ttaacgagGAGGCAACGAGGCTAGTAGtgctttctacaaaaatacaaCAA
AGGAGATGTATGTCCAGCCGTTTTATAAATTTATGGTCTCATCTTTTAAA
TTGAAAGAATCAAGACAGAAGGCTAAATGTCTGGCTATCCTGTAACTATC
TTTTTTTTTGTGTCTTTGATAGCAAGATAGCGGTGGCCCACTTGTTGCAG
AGTTAAAGGAGCCGAGTGAGACTGGACAGTTTTATTTGGTTGGCGTTGTC
AGTTGGGCTAAAGGATGTGCAGATCCAAGATATCCTGGAGTTTATACAAA
TATAGCTCACTTGAGAATTTGGATAGAAGAAAACTTAGCTAAAAATCATG
GTAAGGAAATATATATAAATTATTAGGTTACTATATTATCACAGTATTGA
AGGGTTACTCATTCTGTGACATGAAAGTAATCTTAATTGGGCGAGGGTTc
cttttacttttgtttttatgtAATTTGACAGACCCGAAtacacacccctt
ctcacagacccggtatgaTTTATTCAGCCAAtggagataaaaataacggc
ctgaaacttgatggggattgatattcccgtattttttatggcttgggatt
tcaattattttgttttcaagtcagaaaattcagtggggatggaaaaaata
gcatgatattttgcagtaaggattggtttatttgattattttcggtgcgg
acaaaaattggaggataattttccaccggggcgggacgatattttggaca
atttttccagcgggaaggggtcccagtgggtctgtgagaagggggtgggA
GAAGTTCCAATTTATTCACGTTTGTTTATTGATATACTTCTATATATTAT
TTGGACCtaacttctttaaagatttttttcatcCGTGGTAAtatctattg
ttttattttcttcttgaCTTAGCAGTTTAATCTTTGAAATGTGAGTTATG
GAAATGCTCTCCAGTAGACatggttcttattttcacaaaaatacgagaat
aaaaattagaaaagtcCGTCTGTGACTATTGGAAAAATCCTGagtaaaat
aagaaaatacttAGAATTTTGATTAAGGATTATCAGCCTTTGTTGAGTTG
CTGATGCCTTTTCTAAATcctaattttgataaaatagcaATTGTGAATTA
AATAGCAAAATGATTGGTGTCAAAGTAATAAGTAAGATTGAATCAATCTC
CCGATACTTTTTCTCAAGAGTTtggaatatttcttttttggcCATAACCT
CTTTCCTACCAAATTTCTCAACCACAGTTTTCTACGTCGAAAGCGCATAT
TTCATGCCAGGAtagtgtctacctattgttatattatgctgatataagca
aaaaaatatttttttgtctttttctttcattaGTATTTCCAGCATCAATT
AACCAGACATTGGCAtacaaataaggtaaaaatccTAATGAGCAGAATTG
TGTATACTACAATAGTCACACTTTAGGAATTATTCTAATTCTGATTATTT
CTAGTGATAATGCAGTGTAAAAAGGGTATAAAGtgtgtctcaatataatc
tgtaGTGGAGACAGAAATAGCTATATCTTTCGATATAATTCgaataaaaa
agcggttttgaatattttgactGAGATAATATTATTGAGTTCTTTCGGAA
GTTACAACCTCTTGTCTCTGCTGCATAAATTTTTGGGACAGACTTTGATA
AGTATACGTTTTAGTCGGAAGTTTGAATGCTTGAACCCTATAACTCGTCA
ATATAAGGAGATCACATCTGGTATAGCTGTATAGGTAATATTTGATCATT
TTCCGAAAAACTAAATcgttaaatttttctaatttatttAGTAAAGATCA
TTTCAATTTGTG

Coding sequence (CDS) from alignment at sc0000224:220547..229358+

>TCONS_00015980 ID=TCONS_00015980|Name=TCONS_00015980|organism=Clytia hemisphaerica|type=CDS|length=3945bp|location=Sequence derived from alignment at sc0000224:220547..229358+ (Clytia hemisphaerica)
ATGATTAATTCTACTCAGCTTTATAAGCGTATTATCAGGGGAAAAGATTC
GACTCCCGGAGAAATTCCATGGATGGTAGCCATTATGATTGATGGAGAGT
ATCGTTGTGGAGGAACTTTGATCAGTAAAAAATGGGTTATCTCAGCTGCA
CACTGTAACATCTACAGTGGTGACACTTTAATTCTTGGAGCATATGACAT
TGATGTGACCATTAAAGAAGAATTCAACTCAAGACAAGTTCGAAAAGCAA
AGAAAGTGATAAATAATGAACAACATGACATCCCATTTCTGAATTCAAAC
GATATTGCATTAATTGAACTAGATTTTGAAGTAAAATTTGATCGCTATGT
TAGACCTGCGTGTGTAGTTGGAAGTAATCAGCGCCCATTTGATGGCTCTG
AAGTTACGATATCTGGATGGGGATTAAGATTGCAAAGGTCCAAAAATGTT
CTCCAAAAAGTTGAGGTTAATGTTATGGGTGATGCTGAGTGTACTTCAAA
GTATTCTAGAGAATATCATATTGACAGTTCGATGATATGTGCAGCTGCTC
CTGGAAAAGACGCATGTCAACAAGATAGCGGTGGCCCACTTGTTGCAGAG
TTAAAGGAGCCGAGTGAGACTGGACAGTTTTATTTGGTTGGCGTTGTCAG
TTGGGCTAAAGGATGTGCAGATCCAAGATATCCTGGAGTTTATACAAATA
TAGCTCACTTGAGAATTTGGATAGAAGAAAACTTAGCTAAAAATCATGTA
TTTCCAGCATCAATTAACCAGACATTGGCAtacaaataaATGATTAATTC
TACTCAGCTTTATAAGCGTATTATCAGGGGAAAAGATTCGACTCCCGGAG
AAATTCCATGGATGGTAGCCATTATGATTGATGGAGAGTATCGTTGTGGA
GGAACTTTGATCAGTAAAAAATGGGTTATCTCAGCTGCACACTGTAACAT
CTACAGTGGTGACACTTTAATTCTTGGAGCATATGACATTGATGTGACCA
TTAAAGAAGAATTCAACTCAAGACAAGTTCGAAAAGCAAAGAAAGTGATA
AATAATGAACAACATGACATCCCATTTCTGAATTCAAACGATATTGCATT
AATTGAACTAGATTTTGAAGTAAAATTTGATCGCTATGTTAGACCTGCGT
GTGTAGTTGGAAGTAATCAGCGCCCATTTGATGGCTCTGAAGTTACGATA
TCTGGATGGGGATTAAGATTGCAAAGGTCCAAAAATGTTCTCCAAAAAGT
TGAGGTTAATGTTATGGGTGATGCTGAGTGTACTTCAAAGTATTCTAGAG
AATATCATATTGACAGTTCGATGATATGTGCAGCTGCTCCTGGAAAAGAC
GCATGTCAACAAGATAGCGGTGGCCCACTTGTTGCAGAGTTAAAGGAGCC
GAGTGAGACTGGACAGTTTTATTTGGTTGGCGTTGTCAGTTGGGCTAAAG
GATGTGCAGATCCAAGATATCCTGGAGTTTATACAAATATAGCTCACTTG
AGAATTTGGATAGAAGAAAACTTAGCTAAAAATCATGTATTTCCAGCATC
AATTAACCAGACATTGGCAtacaaataaATGATTAATTCTACTCAGCTTT
ATAAGCGTATTATCAGGGGAAAAGATTCGACTCCCGGAGAAATTCCATGG
ATGGTAGCCATTATGATTGATGGAGAGTATCGTTGTGGAGGAACTTTGAT
CAGTAAAAAATGGGTTATCTCAGCTGCACACTGTAACATCTACAGTGGTG
ACACTTTAATTCTTGGAGCATATGACATTGATGTGACCATTAAAGAAGAA
TTCAACTCAAGACAAGTTCGAAAAGCAAAGAAAGTGATAAATAATGAACA
ACATGACATCCCATTTCTGAATTCAAACGATATTGCATTAATTGAACTAG
ATTTTGAAGTAAAATTTGATCGCTATGTTAGACCTGCGTGTGTAGTTGGA
AGTAATCAGCGCCCATTTGATGGCTCTGAAGTTACGATATCTGGATGGGG
ATTAAGATTGCAAAGGTCCAAAAATGTTCTCCAAAAAGTTGAGGTTAATG
TTATGGGTGATGCTGAGTGTACTTCAAAGTATTCTAGAGAATATCATATT
GACAGTTCGATGATATGTGCAGCTGCTCCTGGAAAAGACGCATGTCAACA
AGATAGCGGTGGCCCACTTGTTGCAGAGTTAAAGGAGCCGAGTGAGACTG
GACAGTTTTATTTGGTTGGCGTTGTCAGTTGGGCTAAAGGATGTGCAGAT
CCAAGATATCCTGGAGTTTATACAAATATAGCTCACTTGAGAATTTGGAT
AGAAGAAAACTTAGCTAAAAATCATGTATTTCCAGCATCAATTAACCAGA
CATTGGCAtacaaataaATGATTAATTCTACTCAGCTTTATAAGCGTATT
ATCAGGGGAAAAGATTCGACTCCCGGAGAAATTCCATGGATGGTAGCCAT
TATGATTGATGGAGAGTATCGTTGTGGAGGAACTTTGATCAGTAAAAAAT
GGGTTATCTCAGCTGCACACTGTAACATCTACAGTGGTGACACTTTAATT
CTTGGAGCATATGACATTGATGTGACCATTAAAGAAGAATTCAACTCAAG
ACAAGTTCGAAAAGCAAAGAAAGTGATAAATAATGAACAACATGACATCC
CATTTCTGAATTCAAACGATATTGCATTAATTGAACTAGATTTTGAAGTA
AAATTTGATCGCTATGTTAGACCTGCGTGTGTAGTTGGAAGTAATCAGCG
CCCATTTGATGGCTCTGAAGTTACGATATCTGGATGGGGATTAAGATTGC
AAAGGTCCAAAAATGTTCTCCAAAAAGTTGAGGTTAATGTTATGGGTGAT
GCTGAGTGTACTTCAAAGTATTCTAGAGAATATCATATTGACAGTTCGAT
GATATGTGCAGCTGCTCCTGGAAAAGACGCATGTCAACAAGATAGCGGTG
GCCCACTTGTTGCAGAGTTAAAGGAGCCGAGTGAGACTGGACAGTTTTAT
TTGGTTGGCGTTGTCAGTTGGGCTAAAGGATGTGCAGATCCAAGATATCC
TGGAGTTTATACAAATATAGCTCACTTGAGAATTTGGATAGAAGAAAACT
TAGCTAAAAATCATGTATTTCCAGCATCAATTAACCAGACATTGGCAtac
aaataaATGATTAATTCTACTCAGCTTTATAAGCGTATTATCAGGGGAAA
AGATTCGACTCCCGGAGAAATTCCATGGATGGTAGCCATTATGATTGATG
GAGAGTATCGTTGTGGAGGAACTTTGATCAGTAAAAAATGGGTTATCTCA
GCTGCACACTGTAACATCTACAGTGGTGACACTTTAATTCTTGGAGCATA
TGACATTGATGTGACCATTAAAGAAGAATTCAACTCAAGACAAGTTCGAA
AAGCAAAGAAAGTGATAAATAATGAACAACATGACATCCCATTTCTGAAT
TCAAACGATATTGCATTAATTGAACTAGATTTTGAAGTAAAATTTGATCG
CTATGTTAGACCTGCGTGTGTAGTTGGAAGTAATCAGCGCCCATTTGATG
GCTCTGAAGTTACGATATCTGGATGGGGATTAAGATTGCAAAGGTCCAAA
AATGTTCTCCAAAAAGTTGAGGTTAATGTTATGGGTGATGCTGAGTGTAC
TTCAAAGTATTCTAGAGAATATCATATTGACAGTTCGATGATATGTGCAG
CTGCTCCTGGAAAAGACGCATGTCAACAAGATAGCGGTGGCCCACTTGTT
GCAGAGTTAAAGGAGCCGAGTGAGACTGGACAGTTTTATTTGGTTGGCGT
TGTCAGTTGGGCTAAAGGATGTGCAGATCCAAGATATCCTGGAGTTTATA
CAAATATAGCTCACTTGAGAATTTGGATAGAAGAAAACTTAGCTAAAAAT
CATGTATTTCCAGCATCAATTAACCAGACATTGGCAtacaaataa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008927XLOC_008927Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015980-exon-sc0000224-1491911889:220547..221005TCONS_00015980-exon-sc0000224-1491911889:220547..221005Clytia hemisphaericaexon
TCONS_00015980-exon-sc0000224-1510915933:220547..221005TCONS_00015980-exon-sc0000224-1510915933:220547..221005Clytia hemisphaericaexon
TCONS_00015980-exon-sc0000224-1575043694:220547..221005TCONS_00015980-exon-sc0000224-1575043694:220547..221005Clytia hemisphaericaexon
TCONS_00015980-exon-sc0000224-1491911889:224684..224950TCONS_00015980-exon-sc0000224-1491911889:224684..224950Clytia hemisphaericaexon
TCONS_00015980-exon-sc0000224-1510915933:224684..224950TCONS_00015980-exon-sc0000224-1510915933:224684..224950Clytia hemisphaericaexon
TCONS_00015980-exon-sc0000224-1575043694:224684..224950TCONS_00015980-exon-sc0000224-1575043694:224684..224950Clytia hemisphaericaexon
TCONS_00015980-exon-sc0000224-1491911889:225579..225823TCONS_00015980-exon-sc0000224-1491911889:225579..225823Clytia hemisphaericaexon
TCONS_00015980-exon-sc0000224-1510915933:225579..225823TCONS_00015980-exon-sc0000224-1510915933:225579..225823Clytia hemisphaericaexon
TCONS_00015980-exon-sc0000224-1575043694:225579..225823TCONS_00015980-exon-sc0000224-1575043694:225579..225823Clytia hemisphaericaexon
TCONS_00015980-exon-sc0000224-1491911889:226100..226204TCONS_00015980-exon-sc0000224-1491911889:226100..226204Clytia hemisphaericaexon
TCONS_00015980-exon-sc0000224-1510915933:226100..226204TCONS_00015980-exon-sc0000224-1510915933:226100..226204Clytia hemisphaericaexon
TCONS_00015980-exon-sc0000224-1575043694:226100..226204TCONS_00015980-exon-sc0000224-1575043694:226100..226204Clytia hemisphaericaexon
TCONS_00015980-exon-sc0000224-1491911889:227669..227846TCONS_00015980-exon-sc0000224-1491911889:227669..227846Clytia hemisphaericaexon
TCONS_00015980-exon-sc0000224-1510915933:227669..227846TCONS_00015980-exon-sc0000224-1510915933:227669..227846Clytia hemisphaericaexon
TCONS_00015980-exon-sc0000224-1575043694:227669..227846TCONS_00015980-exon-sc0000224-1575043694:227669..227846Clytia hemisphaericaexon
TCONS_00015980-exon-sc0000224-1491911889:228880..228921TCONS_00015980-exon-sc0000224-1491911889:228880..228921Clytia hemisphaericaexon
TCONS_00015980-exon-sc0000224-1510915933:228880..228921TCONS_00015980-exon-sc0000224-1510915933:228880..228921Clytia hemisphaericaexon
TCONS_00015980-exon-sc0000224-1575043694:228880..228921TCONS_00015980-exon-sc0000224-1575043694:228880..228921Clytia hemisphaericaexon
TCONS_00015980-exon-sc0000224-1491911889:229338..229358TCONS_00015980-exon-sc0000224-1491911889:229338..229358Clytia hemisphaericaexon
TCONS_00015980-exon-sc0000224-1510915933:229338..229358TCONS_00015980-exon-sc0000224-1510915933:229338..229358Clytia hemisphaericaexon
TCONS_00015980-exon-sc0000224-1575043694:229338..229358TCONS_00015980-exon-sc0000224-1575043694:229338..229358Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015980-proteinTCONS_00015980-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000224supercontigsc0000224:220547..229358 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.487606	0.0445962	0	0	0	0	0	0	0.0448841	0	0	2.38414	8.47769e-09	0	0	0	1.47494e-07	0.0338189	0	0.111239	0	2.08406e-07	0	0	0	0.0836734	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001314Peptidase_S1A
IPR001254Trypsin_dom
IPR018114TRYPSIN_HIS
IPR009003Peptidase_S1_PA
Vocabulary: Molecular Function
TermDefinition
GO:0004252serine-type endopeptidase activity
Vocabulary: Biological Process
TermDefinition
GO:0006508proteolysis
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006508 proteolysis
molecular_function GO:0004252 serine-type endopeptidase activity
Blast
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BLAST of TCONS_00015980 vs. Swiss-Prot (Human)
Match: CTRB1 (Chymotrypsinogen B OS=Homo sapiens GN=CTRB1 PE=2 SV=2)

HSP 1 Score: 144.05 bits (362), Expect = 2.785e-39
Identity = 84/245 (34.29%), Postives = 129/245 (52.65%), Query Frame = 3 
Query:  528 YKRIIRGKDSTPGEIPWMVAIM-IDGEYRCGGTLISKKWVISAAHCNIYSGDTLILGAYDIDVTIKEEFNSRQVRKAKKVINNEQHDIPFLNSNDIALIELDFEVKFDRYVRPACVVGSNQRPFDGSEVTISGWG---LRLQRSKNVLQKVEVNVMGDAECTSKYSREYHIDSSMICAAAPGKDACQQDSGGPLVAELKEPSETGQFYLVGVVSWAKGCADPRYPGVYTNIAHLRIWIEENLAKN 1250
              RI+ G+D+ PG  PW V++    G + CGG+LIS+ WV++AAHC + + D ++ G +D      +E N  QV K  KV  N +  I  +N NDI L++L    +F + V   C+  ++     G+    +GWG       ++ + LQ+  + ++ +AEC   + R   I   MICA A G  +C  DSGGPLV +     + G + LVG+VSW         PGVY  +  L  W+++ LA N
Sbjct:   31 LSRIVNGEDAVPGSWPWQVSLQDKTGFHFCGGSLISEDWVVTAAHCGVRTSDVVVAGEFDQG---SDEEN-IQVLKIAKVFKNPKFSILTVN-NDITLLKLATPARFSQTVSAVCLPSADDDFPAGTLCATTGWGKTKYNANKTPDKLQQAALPLLSNAECKKSWGR--RITDVMICAGASGVSSCMGDSGGPLVCQ-----KDGAWTLVGIVSWGSDTCSTSSPGVYARVTKLIPWVQKILAAN 263
The following BLAST results are available for this feature:
BLAST of TCONS_00015980 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CTRB12.785e-3934.29Chymotrypsinogen B OS=Homo sapiens GN=CTRB1 PE=2 S... [more]
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