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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015965 ID=TCONS_00015965|Name=TCONS_00015965|organism=Clytia hemisphaerica|type=transcript|length=2738bpRun BLAST on NCBI transcript from alignment at sc0000224:109230..150297+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00015965 ID=TCONS_00015965|Name=TCONS_00015965|organism=Clytia hemisphaerica|type=transcript|length=41068bp|location=Sequence derived from alignment at sc0000224:109230..150297+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00015965 vs. Swiss-Prot (Human)
Match: CI072 (Guanine nucleotide exchange C9orf72 OS=Homo sapiens GN=C9orf72 PE=1 SV=2) HSP 1 Score: 200.29 bits (508), Expect = 2.063e-55 Identity = 133/437 (30.43%), Postives = 220/437 (50.34%), Query Frame = 2
Query: 272 LAYWDNVMGPMVSKIW-KGNDKVEASDETVNYISNHTLSGELCRQTEKQTVDPKLCILPDLGYLFNAFIFTGNSKMGPTITSLSFVIAHEDLNKFLMLQD-----------------HLERQ--VKVIVLRYRVFQQKDVGSAIKCVSPSLKKLIKTIDMLAENNIPPEICVATTIFGEGENAALLLDSRFLMRSLTSHLQTCGCTVVVGQSADKVNLMIHTLSLFLGKNECFCSTLASDETTHQFYQDLWLQGIIGKAEEN--MSSKDVLLNTYPVTLINVDEKLVYQTIYASVHAIKRRDNLKTEASLLLHGTELSN------IPTRELFTDD---FGDI---SLLVQKFITQLFSIPNNCSIRRNHIENFKQTLQRKASTFLSYVENKSNNGRSVLTQPQLQLLKQDLGLSCEADFRVVLATAEKHRPGLSLFL 1480
AYWDN++GP V IW ++V SD + +++NHTL+GE+ R E +D K +L + G + + IF GN + LS ++ +L+ +L L H ERQ V+ I+L + S I ++ + +++ + + +++P EI +A T+ + ++ FL+ +++SHLQTCGC+VVVG SA+KVN ++ TL LFL E CS L E++ ++ L++QG++ + + + + V+ YP T I+VD V Q H +R +++E + T + I T E FT D F D+ LV+ F+ Q+F + S+R + F L RKA T + Y+E+ + G+ L+ LK DL L+ E D +++A AEK +PGL F+
Sbjct: 30 FAYWDNILGPRVRHIWAPKTEQVLLSDGEITFLANHTLNGEILRNAESGAIDVKFFVLSEKGVIIVSLIFDGNWNGDRSTYGLSIILPQTELSFYLPLHRVCVDRLTHIIRKGRIWMHKERQENVQKIILEGTERMEDQGQSIIPMLTGEVIPVMELLSSMKSHSVPEEIDIADTVLND-DDIGDSCHEGFLLNAISSHLQTCGCSVVVGSSAEKVNKIVRTLCLFLTPAERKCSRLCEAESSFKYESGLFVQGLLKDSTGSFVLPFRQVMYAPYPTTHIDVDVNTVKQMPPCHEHIYNQRRYMRSELTAFWRATSEEDMAQDTIIYTDESFTPDLNIFQDVLHRDTLVKAFLDQVFQLKPGLSLRSTFLAQFLLVLHRKALTLIKYIEDDTQKGKKPFK--SLRNLKIDLDLTAEGDLNIIMALAEKIKPGLHSFI 463 The following BLAST results are available for this feature:
BLAST of TCONS_00015965 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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