TCONS_00015961 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015961
Unique NameTCONS_00015961
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length262

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015961 ID=TCONS_00015961|Name=TCONS_00015961|organism=Clytia hemisphaerica|type=transcript|length=262bp
ACCAAATCGCGAAGTTTAGTATACATTTGCGGTGTCAATACTTTACTCAA
GCAGTTATTGTGTTTAGATAAATCAGGATAATCCATGCACGGCATAAATT
GTCTGTAGGCTTTTTTCACCTTAGACTTGCAATCGTTAGCAGCTTCAGGG
AATCCCATAGCACCGGTGGCTAAACCCAATGCGGCGGCGCCAACACCAGC
AGCCATATTTAATGGTTTTGAAAGAGCTCGTAACATAGCAGCCATTATTG
ATTGGAAAGTGA
Run BLAST on NCBI

transcript from alignment at sc0000224:85277..85651+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015961 ID=TCONS_00015961|Name=TCONS_00015961|organism=Clytia hemisphaerica|type=transcript|length=375bp|location=Sequence derived from alignment at sc0000224:85277..85651+ (Clytia hemisphaerica)
ACCAAATCGCGAAGTTTAGTATACATTTGCGGTGTCAATACTTTACTCAA
GCAGTTATTGTGTTTAGATAAATCAGGATAATCCATGCACGGCATAAATT
GTCTGTAGGCTTTTTTCACCTTAGACTTGCAANATACATTTGCGGTGTCA
ATACTTTACTCAAGCAGTTATTGTGTTTGGATAAATCAGGATAATCCATA
CACGGCATGAATTGTCTGTAGGCTTTTTTCACCTTAGACTTGCAATCGTT
AGCAGCTTCAGGGAATCCCATAGCACCGGTGGCTAAACCCAATGCGGCGG
CGCCAACACCAGCAGCCATATTTAATGGTTTTGAAAGAGCTCGTAACATA
GCAGCCATTATTGATTGGAAAGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008921XLOC_008921Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015961-exon-sc0000224-1491911889:85277..85384TCONS_00015961-exon-sc0000224-1491911889:85277..85384Clytia hemisphaericaexon
TCONS_00015961-exon-sc0000224-1510915933:85277..85384TCONS_00015961-exon-sc0000224-1510915933:85277..85384Clytia hemisphaericaexon
TCONS_00015961-exon-sc0000224-1575043694:85277..85384TCONS_00015961-exon-sc0000224-1575043694:85277..85384Clytia hemisphaericaexon
TCONS_00015961-exon-sc0000224-1491911889:85498..85651TCONS_00015961-exon-sc0000224-1491911889:85498..85651Clytia hemisphaericaexon
TCONS_00015961-exon-sc0000224-1510915933:85498..85651TCONS_00015961-exon-sc0000224-1510915933:85498..85651Clytia hemisphaericaexon
TCONS_00015961-exon-sc0000224-1575043694:85498..85651TCONS_00015961-exon-sc0000224-1575043694:85498..85651Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000224supercontigsc0000224:85277..85651 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.182508	0	0	0	0	0	0	0	0	0.198428	0	0	0	0.478185	0	0	0	0	0	0	0	2.47168	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00015961 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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