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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015952 ID=TCONS_00015952|Name=TCONS_00015952|organism=Clytia hemisphaerica|type=transcript|length=3013bp tgagaacttaagcatatacgagcctgaccaaggggcttacacttgcttat aaaaaaacatttactgCGCTCCGAACACCACCGCCGCTATATTTACGTAT TACGTATTTGTcgaaaaaagacaaagaaaagcTATCAAAGTTTTAGAATT TCTATGGCACTCATTGCTCTGCAAACAGCACAAATTTTGTCTGGTCTTTT TATTTGCCCGACCCTGTATGGGTTCGGATTGTGATTTTCCAAGAGGCTAA ACCATTCTCGATCCAGAAAAGAAATAGTCTGCCTTTTAACATTTTCCATT TGCAGTGTCAGTTGCTTAGAAATTCTTAGAGCGCGCCATTGAAAATAATA CAGAAAattaaaacaccaaaattataaaaatcacaaaatatcttGATCAT CTCATAAAATCAGGTCGATTTCACCATTCTTTTGATTGTCTTTTTGTCAA AACGTTGTTGGATTTTCCTCTTGCGTTCCTCGTGGAAAACACTTTTCGAA TTTCGTTCCGGATGGAAAAGGATAATGTACACTTTATAAAGATAAATCAG TGCAAAATTGACGAAATTTAACGTTCCTGCTGCTATAATGATTGTGATTT CACGGACCAAGTGTTTTGTTTGTAAGAAGTATATGGAAGTTGTGGCAATG AGGAGAATGACTGAGAAAAATGATGAATAGATCACGTGTgtgttttcttt aaaatatgATGGCAAGCTACGTGCTCTGTATCCTTGTATACAGTTTAAGA AGACTAGGAAGAGGATGAAAAAGAGCTGAGTCAGCACCACGTCATTATTA TTGCATGTTTGTTCTTTAACCAATCGGTAATTGTCATATTTAAAGATGGC ATCGGGAGGATCATTTAGATTGGTGAATGAAACAGCGAGTAGAACGCCAT CAACCAATAGAACAACAAGAATAAGAAGCCATTCAAGAGAGTTTGTTAAT AACTTCTGGCTGGTTGAAACCCGAACTTTCATTGCAAATACAAGAAACAG TTTTTGTGTTTTGGATAAATTAACGGTTAATATGATAGATAATGAAATGC CGATGACTATAGGACGAGCGTAACACGTCGATTGGTGTAAAGTGCCAATA AACATCACTGGTAGGGTTATGGTTAGAATCAGGTGAAAAAGTAGTTGCAG GACTGTCATTTCCTTGTTTGACGATAACACGATAGGTGTGGTCCGGTAAT AAATGAAAATGACCGAAGTTGTAAAAACCATTATGAAAATAAGACCTGAA AATGCAAGCCATGAAATAGGTATTGGGTCAGCGCTATTCAAATAGCTTAA TGTGTAAGGATCAAAACATTTAGTCCTGTCTTTATTAACTCGATTTGGTT TATCACATTTTGCACATTGTTTATTTCCAATGGATGTTTTATAAAAACCT TTTCTGCATTTCTTGCAGTGCCGACCATATGAAGCACTCCAGTTAACACT TTTAAAATATCCATGTTGTAGCTCTTGACCAGGTTTACAGATCGGTATAG AAtcattacattttttacaatctcTCAAAGCTTCCATTgggttaaaataa aattgagttttcaaataatcCAATGTTAAAACGTCTGGATAAAATAAATC TTTGCCTTGCTCTAAAGCAGCTATGTACGTTTCTCTCTCTGACAGAATAG AATTTATAACGAGTTGTCGTCTTGGTTCAGGTACTTTACTCCATGTTTCG AAAGTCATGATGGCGCCTCGTTGAAAAGTTGGGTCGTATTTTATAATTTC GTAATAAGCTAGAAAACCAAAGAATTGTAACTGGTCTCGAAAATGTTTAT GGCGTTTAAATCCATTCCAAACTAAGGCAGAATTCATTAATGTATGACTC GCTTCGTGCACATATTGCATGAACGTATTGATACCGAAAGCTCCGGGAAA GTTAATCAATGCTCCATTAGAATATGACAATTCTTGATTTCGGCTATCAT CATATAAAAGTTCTTTAGATAGTTGGACAAATCCAAAATAAAAAGGGCTT CCTGCGTAAAGCTGGATACTGCCGGCGGTAACTTTGAACTCGCCAATCAA ATCTGCGGGTCCGTCAAGCATGATGAAGTTATAGCGTTCAGTTTTTAGTT CTTTTAGTATCTGAGTCACATTATCTTTGCGTAGGTTGACAGTGAGCTCA CTGAAACAATTTTGTGGATGGTGTGTGACGTAAAAACAAAAAGCTGAAGG TGACAAAAACTCCTTTTCACAACGTCTTCTCAACGATACAGAACCACGTG TTTTAGTTCGGTTACCGTGCAAAAATCCTTTACTTACAGCATCCCCGTCA CTATTGGCAACAGCTAAAGATAAAATGATAACGTTATCGATTTGTAATTG CTTcataaattttttgatgacagTTTCATGGGAACCTTGACCTAGACTTA ATTGATCACTGTAAAAAGATAATGGGTGTTCTAGATAATAGCTTGGATAC ATTTTCTCCTCGGTAACGCTGACAACAACCACATCTCTGACCAATAATAT GGAACTCACAATTCTGGTCAATTCAAAGGATAAATAAGTGAAAATGAACA TTTTACTTCTTTTAGCTAATTTTATTCCATTCTTGCCTTTACATATACCA GACATTTCGACTTTATCGTCATCAGGATCAATGATACCGAATAGCACATC ATACAAGAGTGAAACGTCTTCTTGAATATCCTTGATACATAATTTGAGTA CATCGTGCTGACTtggtttatataatttcaaCATTCGCTGCGCATTGATT TGAGCATTTTGACATTGATACTGTCCTGTACAATTAGTCAATGAAAACAA ACCGTATAAATAAGTACCGACATTTCCAGATACACTTCTGACTAAAACAG TAGAGCATATCAACAAAATGATTAAAACGAATTTCATTTCGCTCATTAAC ACAGCTAAACGTTGAATTTTAAGATGTATGAGTATAACGTTATACAAAAT TCAATAACATTTGTTAATTTTTGTTACGAGTTTCCTCTTGTGCGTTCATT CGCCAGCGATTCA Run BLAST on NCBI protein sequence of TCONS_00015952-protein >TCONS_00015952-protein ID=TCONS_00015952-protein|Name=TCONS_00015952-protein|organism=Clytia hemisphaerica|type=polypeptide|length=828bp
MSEMKFVLIILLICSTVLVRSVSGNVGTYLYGLFSLTNCTGQYQCQNAQI NAQRMLKLYKPSQHDVLKLCIKDIQEDVSLLYDVLFGIIDPDDDKVEMSG ICKGKNGIKLAKRSKMFIFTYLSFELTRIVSSILLVRDVVVVSVTEEKMY PSYYLEHPLSFYSDQLSLGQGSHETVIKKFMKQLQIDNVIILSLAVANSD GDAVSKGFLHGNRTKTRGSVSLRRRCEKEFLSPSAFCFYVTHHPQNCFSE LTVNLRKDNVTQILKELKTERYNFIMLDGPADLIGEFKVTAGSIQLYAGS PFYFGFVQLSKELLYDDSRNQELSYSNGALINFPGAFGINTFMQYVHEAS HTLMNSALVWNGFKRHKHFRDQLQFFGFLAYYEIIKYDPTFQRGAIMTFE TWSKVPEPRRQLVINSILSERETYIAALEQGKDLFYPDVLTLDYLKTQFY FNPMEALRDCKKCNDSIPICKPGQELQHGYFKSVNWSASYGRHCKKCRKG FYKTSIGNKQCAKCDKPNRVNKDRTKCFDPYTLSYLNSADPIPISWLAFS GLIFIMVFTTSVIFIYYRTTPIVLSSNKEMTVLQLLFHLILTITLPVMFI GTLHQSTCYARPIVIGISLSIILTVNLSKTQKLFLVFAMKVRVSTSQKLL TNSLEWLLILVVLLVDGVLLAVSFTNLNDPPDAIFKYDNYRLVKEQTCNN NDVVLTQLFFILFLVFLNCIQGYRARSLPSYFKENTHVIYSSFFSVILLI ATTSIYFLQTKHLVREITIIIAAGTLNFVNFALIYLYKVYIILFHPERNS KSVFHEERKRKIQQRFDKKTIKRMVKST Run BLAST on NCBI transcript from alignment at sc0000222:350601..353613 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00015952 ID=TCONS_00015952|Name=TCONS_00015952|organism=Clytia hemisphaerica|type=transcript|length=3013bp|location=Sequence derived from alignment at sc0000222:350601..353613 (Clytia hemisphaerica) TGAATCGCTGGCGAATGAACGCACAAGAGGAAACTCGTAACAAAAATTAA
CAAATGTTATTGAATTTTGTATAACGTTATACTCATACATCTTAAAATTC
AACGTTTAGCTGTGTTAATGAGCGAAATGAAATTCGTTTTAATCATTTTG
TTGATATGCTCTACTGTTTTAGTCAGAAGTGTATCTGGAAATGTCGGTAC
TTATTTATACGGTTTGTTTTCATTGACTAATTGTACAGGACAGTATCAAT
GTCAAAATGCTCAAATCAATGCGCAGCGAATGttgaaattatataaacca
AGTCAGCACGATGTACTCAAATTATGTATCAAGGATATTCAAGAAGACGT
TTCACTCTTGTATGATGTGCTATTCGGTATCATTGATCCTGATGACGATA
AAGTCGAAATGTCTGGTATATGTAAAGGCAAGAATGGAATAAAATTAGCT
AAAAGAAGTAAAATGTTCATTTTCACTTATTTATCCTTTGAATTGACCAG
AATTGTGAGTTCCATATTATTGGTCAGAGATGTGGTTGTTGTCAGCGTTA
CCGAGGAGAAAATGTATCCAAGCTATTATCTAGAACACCCATTATCTTTT
TACAGTGATCAATTAAGTCTAGGTCAAGGTTCCCATGAAActgtcatcaa
aaaatttatgAAGCAATTACAAATCGATAACGTTATCATTTTATCTTTAG
CTGTTGCCAATAGTGACGGGGATGCTGTAAGTAAAGGATTTTTGCACGGT
AACCGAACTAAAACACGTGGTTCTGTATCGTTGAGAAGACGTTGTGAAAA
GGAGTTTTTGTCACCTTCAGCTTTTTGTTTTTACGTCACACACCATCCAC
AAAATTGTTTCAGTGAGCTCACTGTCAACCTACGCAAAGATAATGTGACT
CAGATACTAAAAGAACTAAAAACTGAACGCTATAACTTCATCATGCTTGA
CGGACCCGCAGATTTGATTGGCGAGTTCAAAGTTACCGCCGGCAGTATCC
AGCTTTACGCAGGAAGCCCTTTTTATTTTGGATTTGTCCAACTATCTAAA
GAACTTTTATATGATGATAGCCGAAATCAAGAATTGTCATATTCTAATGG
AGCATTGATTAACTTTCCCGGAGCTTTCGGTATCAATACGTTCATGCAAT
ATGTGCACGAAGCGAGTCATACATTAATGAATTCTGCCTTAGTTTGGAAT
GGATTTAAACGCCATAAACATTTTCGAGACCAGTTACAATTCTTTGGTTT
TCTAGCTTATTACGAAATTATAAAATACGACCCAACTTTTCAACGAGGCG
CCATCATGACTTTCGAAACATGGAGTAAAGTACCTGAACCAAGACGACAA
CTCGTTATAAATTCTATTCTGTCAGAGAGAGAAACGTACATAGCTGCTTT
AGAGCAAGGCAAAGATTTATTTTATCCAGACGTTTTAACATTGgattatt
tgaaaactcaattttattttaacccAATGGAAGCTTTGAgagattgtaaa
aaatgtaatgaTTCTATACCGATCTGTAAACCTGGTCAAGAGCTACAACA
TGGATATTTTAAAAGTGTTAACTGGAGTGCTTCATATGGTCGGCACTGCA
AGAAATGCAGAAAAGGTTTTTATAAAACATCCATTGGAAATAAACAATGT
GCAAAATGTGATAAACCAAATCGAGTTAATAAAGACAGGACTAAATGTTT
TGATCCTTACACATTAAGCTATTTGAATAGCGCTGACCCAATACCTATTT
CATGGCTTGCATTTTCAGGTCTTATTTTCATAATGGTTTTTACAACTTCG
GTCATTTTCATTTATTACCGGACCACACCTATCGTGTTATCGTCAAACAA
GGAAATGACAGTCCTGCAACTACTTTTTCACCTGATTCTAACCATAACCC
TACCAGTGATGTTTATTGGCACTTTACACCAATCGACGTGTTACGCTCGT
CCTATAGTCATCGGCATTTCATTATCTATCATATTAACCGTTAATTTATC
CAAAACACAAAAACTGTTTCTTGTATTTGCAATGAAAGTTCGGGTTTCAA
CCAGCCAGAAGTTATTAACAAACTCTCTTGAATGGCTTCTTATTCTTGTT
GTTCTATTGGTTGATGGCGTTCTACTCGCTGTTTCATTCACCAATCTAAA
TGATCCTCCCGATGCCATCTTTAAATATGACAATTACCGATTGGTTAAAG
AACAAACATGCAATAATAATGACGTGGTGCTGACTCAGCTCTTTTTCATC
CTCTTCCTAGTCTTCTTAAACTGTATACAAGGATACAGAGCACGTAGCTT
GCCATcatattttaaagaaaacacACACGTGATCTATTCATCATTTTTCT
CAGTCATTCTCCTCATTGCCACAACTTCCATATACTTCTTACAAACAAAA
CACTTGGTCCGTGAAATCACAATCATTATAGCAGCAGGAACGTTAAATTT
CGTCAATTTTGCACTGATTTATCTTTATAAAGTGTACATTATCCTTTTCC
ATCCGGAACGAAATTCGAAAAGTGTTTTCCACGAGGAACGCAAGAGGAAA
ATCCAACAACGTTTTGACAAAAAGACAATCAAAAGAATGGTGAAATCGAC
CTGATTTTATGAGATGATCaagatattttgtgatttttataattttggtg
ttttaatTTTCTGTATTATTTTCAATGGCGCGCTCTAAGAATTTCTAAGC
AACTGACACTGCAAATGGAAAATGTTAAAAGGCAGACTATTTCTTTTCTG
GATCGAGAATGGTTTAGCCTCTTGGAAAATCACAATCCGAACCCATACAG
GGTCGGGCAAATAAAAAGACCAGACAAAATTTGTGCTGTTTGCAGAGCAA
TGAGTGCCATAGAAATTCTAAAACTTTGATAgcttttctttgtctttttt
cgACAAATACGTAATACGTAAATATAGCGGCGGTGGTGTTCGGAGCGcag
taaatgtttttttataagcaagtgtaagccccttggtcaggctcgtatat
gcttaagttctca Coding sequence (CDS) from alignment at sc0000222:350601..353613 >TCONS_00015952 ID=TCONS_00015952|Name=TCONS_00015952|organism=Clytia hemisphaerica|type=CDS|length=2487bp|location=Sequence derived from alignment at sc0000222:350601..353613 (Clytia hemisphaerica) ATGAGCGAAATGAAATTCGTTTTAATCATTTTGTTGATATGCTCTACTGT TTTAGTCAGAAGTGTATCTGGAAATGTCGGTACTTATTTATACGGTTTGT TTTCATTGACTAATTGTACAGGACAGTATCAATGTCAAAATGCTCAAATC AATGCGCAGCGAATGttgaaattatataaaccaAGTCAGCACGATGTACT CAAATTATGTATCAAGGATATTCAAGAAGACGTTTCACTCTTGTATGATG TGCTATTCGGTATCATTGATCCTGATGACGATAAAGTCGAAATGTCTGGT ATATGTAAAGGCAAGAATGGAATAAAATTAGCTAAAAGAAGTAAAATGTT CATTTTCACTTATTTATCCTTTGAATTGACCAGAATTGTGAGTTCCATAT TATTGGTCAGAGATGTGGTTGTTGTCAGCGTTACCGAGGAGAAAATGTAT CCAAGCTATTATCTAGAACACCCATTATCTTTTTACAGTGATCAATTAAG TCTAGGTCAAGGTTCCCATGAAActgtcatcaaaaaatttatgAAGCAAT TACAAATCGATAACGTTATCATTTTATCTTTAGCTGTTGCCAATAGTGAC GGGGATGCTGTAAGTAAAGGATTTTTGCACGGTAACCGAACTAAAACACG TGGTTCTGTATCGTTGAGAAGACGTTGTGAAAAGGAGTTTTTGTCACCTT CAGCTTTTTGTTTTTACGTCACACACCATCCACAAAATTGTTTCAGTGAG CTCACTGTCAACCTACGCAAAGATAATGTGACTCAGATACTAAAAGAACT AAAAACTGAACGCTATAACTTCATCATGCTTGACGGACCCGCAGATTTGA TTGGCGAGTTCAAAGTTACCGCCGGCAGTATCCAGCTTTACGCAGGAAGC CCTTTTTATTTTGGATTTGTCCAACTATCTAAAGAACTTTTATATGATGA TAGCCGAAATCAAGAATTGTCATATTCTAATGGAGCATTGATTAACTTTC CCGGAGCTTTCGGTATCAATACGTTCATGCAATATGTGCACGAAGCGAGT CATACATTAATGAATTCTGCCTTAGTTTGGAATGGATTTAAACGCCATAA ACATTTTCGAGACCAGTTACAATTCTTTGGTTTTCTAGCTTATTACGAAA TTATAAAATACGACCCAACTTTTCAACGAGGCGCCATCATGACTTTCGAA ACATGGAGTAAAGTACCTGAACCAAGACGACAACTCGTTATAAATTCTAT TCTGTCAGAGAGAGAAACGTACATAGCTGCTTTAGAGCAAGGCAAAGATT TATTTTATCCAGACGTTTTAACATTGgattatttgaaaactcaattttat tttaacccAATGGAAGCTTTGAgagattgtaaaaaatgtaatgaTTCTAT ACCGATCTGTAAACCTGGTCAAGAGCTACAACATGGATATTTTAAAAGTG TTAACTGGAGTGCTTCATATGGTCGGCACTGCAAGAAATGCAGAAAAGGT TTTTATAAAACATCCATTGGAAATAAACAATGTGCAAAATGTGATAAACC AAATCGAGTTAATAAAGACAGGACTAAATGTTTTGATCCTTACACATTAA GCTATTTGAATAGCGCTGACCCAATACCTATTTCATGGCTTGCATTTTCA GGTCTTATTTTCATAATGGTTTTTACAACTTCGGTCATTTTCATTTATTA CCGGACCACACCTATCGTGTTATCGTCAAACAAGGAAATGACAGTCCTGC AACTACTTTTTCACCTGATTCTAACCATAACCCTACCAGTGATGTTTATT GGCACTTTACACCAATCGACGTGTTACGCTCGTCCTATAGTCATCGGCAT TTCATTATCTATCATATTAACCGTTAATTTATCCAAAACACAAAAACTGT TTCTTGTATTTGCAATGAAAGTTCGGGTTTCAACCAGCCAGAAGTTATTA ACAAACTCTCTTGAATGGCTTCTTATTCTTGTTGTTCTATTGGTTGATGG CGTTCTACTCGCTGTTTCATTCACCAATCTAAATGATCCTCCCGATGCCA TCTTTAAATATGACAATTACCGATTGGTTAAAGAACAAACATGCAATAAT AATGACGTGGTGCTGACTCAGCTCTTTTTCATCCTCTTCCTAGTCTTCTT AAACTGTATACAAGGATACAGAGCACGTAGCTTGCCATcatattttaaag aaaacacACACGTGATCTATTCATCATTTTTCTCAGTCATTCTCCTCATT GCCACAACTTCCATATACTTCTTACAAACAAAACACTTGGTCCGTGAAAT CACAATCATTATAGCAGCAGGAACGTTAAATTTCGTCAATTTTGCACTGA TTTATCTTTATAAAGTGTACATTATCCTTTTCCATCCGGAACGAAATTCG AAAAGTGTTTTCCACGAGGAACGCAAGAGGAAAATCCAACAACGTTTTGA CAAAAAGACAATCAAAAGAATGGTGAAATCGACCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00015952-exon-sc0000222-1491911889:350601..353613 | TCONS_00015952-exon-sc0000222-1491911889:350601..353613 | Clytia hemisphaerica | exon |
TCONS_00015952-exon-sc0000222-1510915933:350601..353613 | TCONS_00015952-exon-sc0000222-1510915933:350601..353613 | Clytia hemisphaerica | exon |
TCONS_00015952-exon-sc0000222-1575043694:350601..353613 | TCONS_00015952-exon-sc0000222-1575043694:350601..353613 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000222 | supercontig | sc0000222:350601..353613 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Cellular Component
Term | Definition |
GO:0016021 | integral component of membrane |
Vocabulary: Biological Process
Term | Definition |
GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
Term | Definition |
GO:0004930 | G-protein coupled receptor activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
cellular_component |
GO:0016021 |
integral component of membrane |
molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
BLAST of TCONS_00015952 vs. Swiss-Prot (Human)
Match: GRM7 (Metabotropic glutamate receptor 7 OS=Homo sapiens GN=GRM7 PE=1 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 1.572e-20 Identity = 89/355 (25.07%), Postives = 164/355 (46.20%), Query Frame = -1
Query: 467 CKPGQELQHGYFKSVNWSASYGRHCKKCRKGFYKTSIGNKQCAKCDKPNRVNKDRTKCFD-PY-TLSYLNSADPIPISWLAFSGLIF-IMVFTTSVIFIYYRTTPIVLSSNKEMTVLQLLFHLILTITLPVMFIGTLHQSTCYARPIVIGISLSIILTVNLSKTQKLFLVFAMKVRVSTSQKLLTNSXXXXXXXXXXXXXXXXXXVSFTNLNDPPDAIFKYDNYRLVKEQT------CNNNDV-VLTQLFFILFLVFLNCIQGYRARSLPSYFKENTHVIYSSFFSVILLIATTSIYFLQT----KHLVREITIIIAAGTLNFVNFALIYLYKVYIILFHPERNSKSVFHEERKR 1489
CKPGQ + W+ C+ C Y+ C C R N++RT C D P L + + IP+ +LA G+I I V T FI Y TPIV +S +E++ + LL + L + + I + C R + +G+ + I L+KT +++ +F + T+ +L++ + + + ++ V + + + F DPP+ I YD ++ + + C+ D+ ++ L + + L+ + + R +P F E + ++ + + I+ +A I+F K ++ T+ I+ V ++Y+ KVYII+FHPE N ++RKR
Sbjct: 527 CKPGQRKKTQKGTPCCWT------CEPCDG--YQYQFDEMTCQHCPYDQRPNENRTGCQDIPIIKLEWHSPWAVIPV-FLAMLGIIATIFVMAT---FIRYNDTPIVRASGRELSYV-LLTGIFLCYIITFLMIAKPDVAVCSFRRVFLGLGMCISYAALLTKTNRIYRIFEQGKKSVTAPRLISPTSQLAITSSLISVQLLGVFIWFGV--DPPNIIIDYDEHKTMNPEQARGVLKCDITDLQIICSLGYSILLMVTCTVYAIKTRGVPENFNEAKPIGFTMYTTCIVWLAFIPIFFGTAQSAEKLYIQTTTLTISMNLSASVALGMLYMPKVYIIIFHPELNV-----QKRKR 861
The following BLAST results are available for this feature:
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