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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015948 ID=TCONS_00015948|Name=TCONS_00015948|organism=Clytia hemisphaerica|type=transcript|length=2162bp
CTACAGTACACTAAAGTAAAAGTGAAAGAAGTTTATGTCAGTTACTGTAG
TTATTTCTCGTTTTGAGAGCAGCAGCATGGAGGACGCAAACTGGAGTAAT
GTCAAGagcaagaaaacaaagaaagaaaagtccAAACACAAGAAACAAAC
TAAGGATCAAGAAACGATCCAAAATTTAATTCAATTCTACAAGATTCAGC
TATGCAAGAAACCGTTACGAAGTCACAACATTCATACGTGTCTGAATGCA
CATGGGAAAGAAGAATTGCGGCGTTATCCGTTCCGTCAAGATAACGAGAC
GTTACGTTACTCTAAAAACATGTGTGTGAATGTCAAGACTCTTGGTGATT
GCAGTGCTGGTGATGAATGTACTGATTCTCACAATGAAGCTGAGCAGCAT
TTCCATCCAGCAATTTACAAAACCGTCCAATGTAATCGAAAACCGTGTCT
TATCTATTTCTGTTATTTCGCACATGGCCCAAGCCAGCTTCGAAAACCGC
TCGAAAAACACTTCGAAGTAAGAAAAGAGAGAACGGTTAATTTGAGCGAC
TTCATAGCAGCTCAAACTGCTCCGCCGGTGGAAATTTGTATTGCTAAGCa
agaaccaatcaaaatcatTCGTGACTGGACAGGTTGGCAACAAATTATAA
CAACCACAGAGCTTCTACCTTGCCCTATTGACGATGTCTTCTCTAGAATG
CTGTTCAAGTATGAAGAACTACAGCATACGGTTCGCGATCTTTGCTTCAA
AGATGGGTGCACGCCTTATATTGAGGTGGGACAACGCCCTTCGTATAGCC
CCGTCCTTCTTATGATTGGTGGAGCCTCTAGAGATGTCATTTGTCAAGCT
TCCATGTCAGTTCAGAAATTCTTGTCGACAGCTCATCCTAAAACGGAAGA
AAAATTCCCAGCTAGATTTCTTAGCTATTTAGAATCCGATCAAAAGGGAA
TCAAAACTCTTAAAACACTTTGTTTAAATAATAAAGGTATTGACATTTCT
GTTGAAAGAGGGTTGAACACGGTTACAGTGTGGGGTAACCATCTCAACAA
ACGCCAAATGGTCATTCTGGAGCTGAAGAAAATTTGTACTGGATTCGCTT
TGGAAGATGCCAGTAACATCGCAGATGCGCGTTTGAGGAGCCTCGAGATT
GAGCTACAGAATACTCAAAAGCAACTTCAAGATGCTTTAGAAGAAAACTA
CCAATTAAGAAATTCGCTGAAGTCAGCACATTTGATAGCTGAGAAACTGC
AAGACGAAGGGAAGCAGATTATGatcttacaaaaacaaaaagaattgcCA
AAGTATTGGGAATCTACCGAAGATTACCAAGAATTCAATGTCGAGAAAGG
TTCAGAGGAATGGGAAAATGTCTTGACAACATTTTTGGCAACTATCAGGA
TCGCGTTTCGCTTCAACGTTGTCAGCATCAAACGAATAGAGAATCATGAG
TTATGGGATCATTTTGTTTTACTACAAAAGAAAATCAGCAACATGAAAGA
ACTTTGGCATGGAACCTCACAGGAATCATTGGCAAAGATATGCGAAAAAG
GCTTTGATAGGTCTTACGCTGGCATGCATGCTGTTGCTTTTGGACAGGGA
ACCTATTTCGCGAGAGATTCCCATTACTCTGTTAAATATGCTAGCCGTGA
TCAAAACGAGAATCGCTATATGATTTTGGCGAAAGTATTGGTTGGAAGAT
ACATGCAAGGATATCATGAGTTAAAACATCTTGAGGAAGGTTTCGACACT
GCTGTTAATCGTTTATACGATCCATCAATTTATGTTACTTTCAAAGATTT
CCAAGCCTATCCAGCATATGTTGTCAAGTTTAGAAGGGACTAATCGCtgt
gtgtgttttttttttacaaaataggTATTAGACTATATCCGTAGGTGCGG
TGGATAGGGGCTTGAATTGATGAAGCTATAGGGGGGTTTTATCAAATATG
TAAACAAGCGGTGTCGtcagacaaagtgacactttctGTCACTCATATCT
GCTAATCTTTTTTATGcgtttttatattattttcacttgttattttttgt
gattttcactTGCTTTTTGTTTGTAAATGGGTATAGttaattgaatattt
ttaataaaagaATTTGTTGTGCCACAGTTTTTAACTTTCACTAATTTGAA
CTCCAATCGAat Run BLAST on NCBI protein sequence of TCONS_00015948-protein >TCONS_00015948-protein ID=TCONS_00015948-protein|Name=TCONS_00015948-protein|organism=Clytia hemisphaerica|type=polypeptide|length=602bp
MSVTVVISRFESSSMEDANWSNVKSKKTKKEKSKHKKQTKDQETIQNLIQ
FYKIQLCKKPLRSHNIHTCLNAHGKEELRRYPFRQDNETLRYSKNMCVNV
KTLGDCSAGDECTDSHNEAEQHFHPAIYKTVQCNRKPCLIYFCYFAHGPS
QLRKPLEKHFEVRKERTVNLSDFIAAQTAPPVEICIAKQEPIKIIRDWTG
WQQIITTTELLPCPIDDVFSRMLFKYEELQHTVRDLCFKDGCTPYIEVGQ
RPSYSPVLLMIGGASRDVICQASMSVQKFLSTAHPKTEEKFPARFLSYLE
SDQKGIKTLKTLCLNNKGIDISVERGLNTVTVWGNHLNKRQMVILELKKI
CTGFALEDASNIADARLRSLEIELQNTQKQLQDALEENYQLRNSLKSAHL
IAEKLQDEGKQIMILQKQKELPKYWESTEDYQEFNVEKGSEEWENVLTTF
LATIRIAFRFNVVSIKRIENHELWDHFVLLQKKISNMKELWHGTSQESLA
KICEKGFDRSYAGMHAVAFGQGTYFARDSHYSVKYASRDQNENRYMILAK
VLVGRYMQGYHELKHLEEGFDTAVNRLYDPSIYVTFKDFQAYPAYVVKFR
RD Run BLAST on NCBI transcript from alignment at sc0000222:176841..179002 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00015948 ID=TCONS_00015948|Name=TCONS_00015948|organism=Clytia hemisphaerica|type=transcript|length=2162bp|location=Sequence derived from alignment at sc0000222:176841..179002 (Clytia hemisphaerica)
atTCGATTGGAGTTCAAATTAGTGAAAGTTAAAAACTGTGGCACAACAAA
TtcttttattaaaaatattcaattaaCTATACCCATTTACAAACAAAAAG
CAagtgaaaatcacaaaaaataacaagtgaaaataatataaaaacgCATA
AAAAAGATTAGCAGATATGAGTGACagaaagtgtcactttgtctgaCGAC
ACCGCTTGTTTACATATTTGATAAAACCCCCCTATAGCTTCATCAATTCA
AGCCCCTATCCACCGCACCTACGGATATAGTCTAATAcctattttgtaaa
aaaaaaacacacacaGCGATTAGTCCCTTCTAAACTTGACAACATATGCT
GGATAGGCTTGGAAATCTTTGAAAGTAACATAAATTGATGGATCGTATAA
ACGATTAACAGCAGTGTCGAAACCTTCCTCAAGATGTTTTAACTCATGAT
ATCCTTGCATGTATCTTCCAACCAATACTTTCGCCAAAATCATATAGCGA
TTCTCGTTTTGATCACGGCTAGCATATTTAACAGAGTAATGGGAATCTCT
CGCGAAATAGGTTCCCTGTCCAAAAGCAACAGCATGCATGCCAGCGTAAG
ACCTATCAAAGCCTTTTTCGCATATCTTTGCCAATGATTCCTGTGAGGTT
CCATGCCAAAGTTCTTTCATGTTGCTGATTTTCTTTTGTAGTAAAACAAA
ATGATCCCATAACTCATGATTCTCTATTCGTTTGATGCTGACAACGTTGA
AGCGAAACGCGATCCTGATAGTTGCCAAAAATGTTGTCAAGACATTTTCC
CATTCCTCTGAACCTTTCTCGACATTGAATTCTTGGTAATCTTCGGTAGA
TTCCCAATACTTTGgcaattctttttgtttttgtaagatCATAATCTGCT
TCCCTTCGTCTTGCAGTTTCTCAGCTATCAAATGTGCTGACTTCAGCGAA
TTTCTTAATTGGTAGTTTTCTTCTAAAGCATCTTGAAGTTGCTTTTGAGT
ATTCTGTAGCTCAATCTCGAGGCTCCTCAAACGCGCATCTGCGATGTTAC
TGGCATCTTCCAAAGCGAATCCAGTACAAATTTTCTTCAGCTCCAGAATG
ACCATTTGGCGTTTGTTGAGATGGTTACCCCACACTGTAACCGTGTTCAA
CCCTCTTTCAACAGAAATGTCAATACCTTTATTATTTAAACAAAGTGTTT
TAAGAGTTTTGATTCCCTTTTGATCGGATTCTAAATAGCTAAGAAATCTA
GCTGGGAATTTTTCTTCCGTTTTAGGATGAGCTGTCGACAAGAATTTCTG
AACTGACATGGAAGCTTGACAAATGACATCTCTAGAGGCTCCACCAATCA
TAAGAAGGACGGGGCTATACGAAGGGCGTTGTCCCACCTCAATATAAGGC
GTGCACCCATCTTTGAAGCAAAGATCGCGAACCGTATGCTGTAGTTCTTC
ATACTTGAACAGCATTCTAGAGAAGACATCGTCAATAGGGCAAGGTAGAA
GCTCTGTGGTTGTTATAATTTGTTGCCAACCTGTCCAGTCACGAatgatt
ttgattggttcttGCTTAGCAATACAAATTTCCACCGGCGGAGCAGTTTG
AGCTGCTATGAAGTCGCTCAAATTAACCGTTCTCTCTTTTCTTACTTCGA
AGTGTTTTTCGAGCGGTTTTCGAAGCTGGCTTGGGCCATGTGCGAAATAA
CAGAAATAGATAAGACACGGTTTTCGATTACATTGGACGGTTTTGTAAAT
TGCTGGATGGAAATGCTGCTCAGCTTCATTGTGAGAATCAGTACATTCAT
CACCAGCACTGCAATCACCAAGAGTCTTGACATTCACACACATGTTTTTA
GAGTAACGTAACGTCTCGTTATCTTGACGGAACGGATAACGCCGCAATTC
TTCTTTCCCATGTGCATTCAGACACGTATGAATGTTGTGACTTCGTAACG
GTTTCTTGCATAGCTGAATCTTGTAGAATTGAATTAAATTTTGGATCGTT
TCTTGATCCTTAGTTTGTTTCTTGTGTTTggacttttctttctttgtttt
cttgctCTTGACATTACTCCAGTTTGCGTCCTCCATGCTGCTGCTCTCAA
AACGAGAAATAACTACAGTAACTGACATAAACTTCTTTCACTTTTACTTT
AGTGTACTGTAG Coding sequence (CDS) from alignment at sc0000222:176841..179002 >TCONS_00015948 ID=TCONS_00015948|Name=TCONS_00015948|organism=Clytia hemisphaerica|type=CDS|length=1809bp|location=Sequence derived from alignment at sc0000222:176841..179002 (Clytia hemisphaerica)
TTAGTCCCTTCTAAACTTGACAACATATGCTGGATAGGCTTGGAAATCTT
TGAAAGTAACATAAATTGATGGATCGTATAAACGATTAACAGCAGTGTCG
AAACCTTCCTCAAGATGTTTTAACTCATGATATCCTTGCATGTATCTTCC
AACCAATACTTTCGCCAAAATCATATAGCGATTCTCGTTTTGATCACGGC
TAGCATATTTAACAGAGTAATGGGAATCTCTCGCGAAATAGGTTCCCTGT
CCAAAAGCAACAGCATGCATGCCAGCGTAAGACCTATCAAAGCCTTTTTC
GCATATCTTTGCCAATGATTCCTGTGAGGTTCCATGCCAAAGTTCTTTCA
TGTTGCTGATTTTCTTTTGTAGTAAAACAAAATGATCCCATAACTCATGA
TTCTCTATTCGTTTGATGCTGACAACGTTGAAGCGAAACGCGATCCTGAT
AGTTGCCAAAAATGTTGTCAAGACATTTTCCCATTCCTCTGAACCTTTCT
CGACATTGAATTCTTGGTAATCTTCGGTAGATTCCCAATACTTTGgcaat
tctttttgtttttgtaagatCATAATCTGCTTCCCTTCGTCTTGCAGTTT
CTCAGCTATCAAATGTGCTGACTTCAGCGAATTTCTTAATTGGTAGTTTT
CTTCTAAAGCATCTTGAAGTTGCTTTTGAGTATTCTGTAGCTCAATCTCG
AGGCTCCTCAAACGCGCATCTGCGATGTTACTGGCATCTTCCAAAGCGAA
TCCAGTACAAATTTTCTTCAGCTCCAGAATGACCATTTGGCGTTTGTTGA
GATGGTTACCCCACACTGTAACCGTGTTCAACCCTCTTTCAACAGAAATG
TCAATACCTTTATTATTTAAACAAAGTGTTTTAAGAGTTTTGATTCCCTT
TTGATCGGATTCTAAATAGCTAAGAAATCTAGCTGGGAATTTTTCTTCCG
TTTTAGGATGAGCTGTCGACAAGAATTTCTGAACTGACATGGAAGCTTGA
CAAATGACATCTCTAGAGGCTCCACCAATCATAAGAAGGACGGGGCTATA
CGAAGGGCGTTGTCCCACCTCAATATAAGGCGTGCACCCATCTTTGAAGC
AAAGATCGCGAACCGTATGCTGTAGTTCTTCATACTTGAACAGCATTCTA
GAGAAGACATCGTCAATAGGGCAAGGTAGAAGCTCTGTGGTTGTTATAAT
TTGTTGCCAACCTGTCCAGTCACGAatgattttgattggttcttGCTTAG
CAATACAAATTTCCACCGGCGGAGCAGTTTGAGCTGCTATGAAGTCGCTC
AAATTAACCGTTCTCTCTTTTCTTACTTCGAAGTGTTTTTCGAGCGGTTT
TCGAAGCTGGCTTGGGCCATGTGCGAAATAACAGAAATAGATAAGACACG
GTTTTCGATTACATTGGACGGTTTTGTAAATTGCTGGATGGAAATGCTGC
TCAGCTTCATTGTGAGAATCAGTACATTCATCACCAGCACTGCAATCACC
AAGAGTCTTGACATTCACACACATGTTTTTAGAGTAACGTAACGTCTCGT
TATCTTGACGGAACGGATAACGCCGCAATTCTTCTTTCCCATGTGCATTC
AGACACGTATGAATGTTGTGACTTCGTAACGGTTTCTTGCATAGCTGAAT
CTTGTAGAATTGAATTAAATTTTGGATCGTTTCTTGATCCTTAGTTTGTT
TCTTGTGTTTggacttttctttctttgttttcttgctCTTGACATTACTC
CAGTTTGCGTCCTCCATGCTGCTGCTCTCAAAACGAGAAATAACTACAGT
AACTGACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00015948-exon-sc0000222-1491911889:176841..179002 | TCONS_00015948-exon-sc0000222-1491911889:176841..179002 | Clytia hemisphaerica | exon |
| TCONS_00015948-exon-sc0000222-1510915933:176841..179002 | TCONS_00015948-exon-sc0000222-1510915933:176841..179002 | Clytia hemisphaerica | exon |
| TCONS_00015948-exon-sc0000222-1575043694:176841..179002 | TCONS_00015948-exon-sc0000222-1575043694:176841..179002 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000222 | supercontig | sc0000222:176841..179002 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR012317 | Poly(ADP-ribose)pol_cat_dom |
| IPR000571 | Znf_CCCH |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003950 | NAD+ ADP-ribosyltransferase activity |
| GO:0046872 | metal ion binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0046872 |
metal ion binding |
| molecular_function |
GO:0003950 |
NAD+ ADP-ribosyltransferase activity |
Blast
BLAST of TCONS_00015948 vs. Swiss-Prot (Human)
Match: PAR12 (Poly [ADP-ribose] polymerase 12 OS=Homo sapiens GN=PARP12 PE=1 SV=1) HSP 1 Score: 116.316 bits (290), Expect = 7.699e-27 Identity = 68/200 (34.00%), Postives = 111/200 (55.50%), Query Frame = 2
Query: 1289 KELPKYWEST----EDYQEFNVEKGSEEWENVLTTFLATIRIAFRFNVVSIKRIENHELWDHFVL----LQK----KISNMKELWHGTSQESLAKICEKGFDRSYAGMHAVAFGQGTYFARDSHYSVKYASRDQNENRYMILAKVLVGRYMQGYHEL--KHLEEG-----FDTAVNRLYDPSIYVTFKDFQAYPAYVVKF 1831
K +P YW+S+ +Q+ + SEE++ V F T+ F V I+R++N LW+ + +QK K + ++L+HGTS + IC++ FD G+H ++G+G+YFARD+ YS Y+ D + M LA+VLVG +++G +EG +D+ VN + DPSI+V F+ Q YP YV+++
Sbjct: 482 KSIPDYWDSSALPDPGFQKITLSSSSEEYQKVWNLFNRTLPFYF---VQKIERVQNLALWEVYQWQKGQMQKQNGGKAVDERQLFHGTSAIFVDAICQQNFDWRVCGVHGTSYGKGSYFARDAAYSHHYSKSD-TQTHTMFLARVLVGEFVRGNASFVRPPAKEGWSNAFYDSCVNSVSDPSIFVIFEKHQVYPEYVIQY 677
The following BLAST results are available for this feature:
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