|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015945 ID=TCONS_00015945|Name=TCONS_00015945|organism=Clytia hemisphaerica|type=transcript|length=2179bp
gaaaaaataagatATCTAGGTTGCTTTacaaattcaagttaaaatagTTT
TGATTAATATAATTCTGAATGATCGATTTGGTCTTTAAATCATTCCCTTT
GACTCATAATAAATTCATGATTCTGATTATAATAACTTCGATTAAAACGA
CGATATCGATTTATCGAATCAAAGTCGAAAATATCCATGACAGTCATATT
ATCGAGGTCATATTTCCCCGATTGTCCGATAACATTAAATCCATCCCGAA
TCGGAATACAGGCAACGGCAGCTGATCGAGCCACTGTCGATATCGTATTC
GAATGTGTCGAACTTCTAGATTTCGATAGGTCTGTCAAAGCGCTTGCAAG
ACTCTTCCGTCTTTTAGCTTTAAGCCAATATCCACGCCAAAAGTATACAA
TTGGGTTGCAAATTgaattacagaccagaaaacataAACTGATCGTATGA
ATAGTGTTAGAAACATTATTTACAATCGGTAAACAGGCGGATGGTAAAGT
ACAGACCAGAAACGAAACGGTGACTATACAAGCGGTTAAGAGAGCGACAG
TCTCGACTTTACTTCGTCTATTGTTTCTGCTTTTATTCTGTTTATGTCGA
CTGGTGCTTCTACGGAAAGAGCGAAGAAAGCTGGCTTGCATAGCTAGCCG
ACGAGTGATAATTAGGTAGATCAAAGCAACAATAAAGCACGATATGAATA
TGGTATAACTGATCAACAATTCACTTTTATGGTGAAGGGAATCGTCATTC
ATCAGATAGGCAAGCCCTCTATGATATTTATATACCGATATAGATGCAAC
GAAAGCAAGAGTTAATAACCAGATTGAGAATACGGCACGTTTCATTTTGA
CAGCGTCCGTTCGTACGCGATGACGTAACGGGAACAGAACTGCAATTAAA
CGGTCTATAGAGATTCCTACAACGTGCAATATGGATGCAATGATTGAAAA
GCTTGTTAACATGTAGAGACATTCGTTCACCATCCGTCCCGTTGGCCCGT
CATTATGATACGTCAACGTTAGTGTTAACGTAAGTACAACTAAAAGACTG
AACAAAAAATCTGCCACCGCTAAACTAATCATCAGTAATTCTGACGGGAA
ATATTTCTTTCGTTTTTTCATTAAATGCATTTCAGCCATGTTGAGTAGCA
TCGCGATGACGGCTAAAATGATTTGAGGTAGAATGTGATGATAGTCTTGT
GACCCGTCATAATCGATATCTGATGGTTCAAGCAAATCCTCGTGACATAA
ATCTTTCTCATACAGATCGTAACACATTTCTCCTGTAGTATTGGTAAAAT
TCAGGAAATTGTTGATTGTAGAATTATTCAGTTTGTTGATGAAATCATTC
AAACCTTGCTCTAAAGAATGGTTCATATTTAAAGGCAAGTCGTGAAAATC
GCTGCCATTAAAATTTCCTGTAAGATAATCAGTCTCGTTAGAATCTGCCG
ATACACCAGTGTAATTTACAAAGTGTAGATCCTCAAGACCAGTCTCCAAT
TGTTCAAATTCGTATTCAAAATAGCGTTGGCATTTCAAACAATCATCCAC
CAACATCACAAGTGTAAGTTAATATCAGGTACTGGCAAGTCAACAATGAA
AAGACAATTATAATATGAAACTCCTAGATACTAATCACCTCGTGAACATT
TCCATGTGTCCATGTGAATTAAAATCCGTTTTCGAAAAGCACGTTGATCA
TTTAAAAGCCTTCAAATAATGGTTTCGGAAGTCCCTTCTCGATAATCTTG
TAGTCAAGCATGTATGCCAAATAAATTTAAGGTTATGAAAATGATTGTCT
GACAACAAAACAAACTGTGAACTCTTAACCGATCCttaattcgatttttt
tgtttcgaaatttcACTGCCAACCTCAACAAAGATGAATAATGAAATGGA
ATGTAGGTTTTTCGCAGCAACAAacagaaaaacaccaaaatatctCCCTT
ATTGATAACGGAAGCAAAAGCAGAAGAATGAGTTTGACAAATTACTTGAT
TTTCTTATAATTGTCACATTGTTTCATTAACGACCTCGTTAAAAATATGA
TAAGGACTTCATCAAACAACACGCGGCTGTGAAGgttgattgaaatattt
ctttcgttGAAACATGCTTTTTTATATCACCTCATCATCGTTCGTTTGAG
TTTCGCCGAAACAGAAAGTCAGTAAAAAG Run BLAST on NCBI protein sequence of TCONS_00015945-protein >TCONS_00015945-protein ID=TCONS_00015945-protein|Name=TCONS_00015945-protein|organism=Clytia hemisphaerica|type=polypeptide|length=488bp
MLVDDCLKCQRYFEYEFEQLETGLEDLHFVNYTGVSADSNETDYLTGNFN
GSDFHDLPLNMNHSLEQGLNDFINKLNNSTINNFLNFTNTTGEMCYDLYE
KDLCHEDLLEPSDIDYDGSQDYHHILPQIILAVIAMLLNMAEMHLMKKRK
KYFPSELLMISLAVADFLFSLLVVLTLTLTLTYHNDGPTGRMVNECLYML
TSFSIIASILHVVGISIDRLIAVLFPLRHRVRTDAVKMKRAVFSIWLLTL
AFVASISVYKYHRGLAYLMNDDSLHHKSELLISYTIFISCFIVALIYLII
TRRLAMQASFLRSFRRSTSRHKQNKSRNNRRSKVETVALLTACIVTVSFL
VCTLPSACLPIVNNVSNTIHTISLCFLVCNSICNPIVYFWRGYWLKAKRR
KSLASALTDLSKSRSSTHSNTISTVARSAAVACIPIRDGFNVIGQSGKYD
LDNMTVMDIFDFDSINRYRRFNRSYYNQNHEFIMSQRE Run BLAST on NCBI transcript from alignment at sc0000222:36307..38485 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00015945 ID=TCONS_00015945|Name=TCONS_00015945|organism=Clytia hemisphaerica|type=transcript|length=2179bp|location=Sequence derived from alignment at sc0000222:36307..38485 (Clytia hemisphaerica)
CTTTTTACTGACTTTCTGTTTCGGCGAAACTCAAACGAACGATGATGAGG
TGATATAAAAAAGCATGTTTCaacgaaagaaatatttcaatcaacCTTCA
CAGCCGCGTGTTGTTTGATGAAGTCCTTATCATATTTTTAACGAGGTCGT
TAATGAAACAATGTGACAATTATAAGAAAATCAAGTAATTTGTCAAACTC
ATTCTTCTGCTTTTGCTTCCGTTATCAATAAGGGagatattttggtgttt
ttctgtTTGTTGCTGCGAAAAACCTACATTCCATTTCATTATTCATCTTT
GTTGAGGTTGGCAGTgaaatttcgaaacaaaaaaatcgaattaaGGATCG
GTTAAGAGTTCACAGTTTGTTTTGTTGTCAGACAATCATTTTCATAACCT
TAAATTTATTTGGCATACATGCTTGACTACAAGATTATCGAGAAGGGACT
TCCGAAACCATTATTTGAAGGCTTTTAAATGATCAACGTGCTTTTCGAAA
ACGGATTTTAATTCACATGGACACATGGAAATGTTCACGAGGTGATTAGT
ATCTAGGAGTTTCATATTATAATTGTCTTTTCATTGTTGACTTGCCAGTA
CCTGATATTAACTTACACTTGTGATGTTGGTGGATGATTGTTTGAAATGC
CAACGCTATTTTGAATACGAATTTGAACAATTGGAGACTGGTCTTGAGGA
TCTACACTTTGTAAATTACACTGGTGTATCGGCAGATTCTAACGAGACTG
ATTATCTTACAGGAAATTTTAATGGCAGCGATTTTCACGACTTGCCTTTA
AATATGAACCATTCTTTAGAGCAAGGTTTGAATGATTTCATCAACAAACT
GAATAATTCTACAATCAACAATTTCCTGAATTTTACCAATACTACAGGAG
AAATGTGTTACGATCTGTATGAGAAAGATTTATGTCACGAGGATTTGCTT
GAACCATCAGATATCGATTATGACGGGTCACAAGACTATCATCACATTCT
ACCTCAAATCATTTTAGCCGTCATCGCGATGCTACTCAACATGGCTGAAA
TGCATTTAATGAAAAAACGAAAGAAATATTTCCCGTCAGAATTACTGATG
ATTAGTTTAGCGGTGGCAGATTTTTTGTTCAGTCTTTTAGTTGTACTTAC
GTTAACACTAACGTTGACGTATCATAATGACGGGCCAACGGGACGGATGG
TGAACGAATGTCTCTACATGTTAACAAGCTTTTCAATCATTGCATCCATA
TTGCACGTTGTAGGAATCTCTATAGACCGTTTAATTGCAGTTCTGTTCCC
GTTACGTCATCGCGTACGAACGGACGCTGTCAAAATGAAACGTGCCGTAT
TCTCAATCTGGTTATTAACTCTTGCTTTCGTTGCATCTATATCGGTATAT
AAATATCATAGAGGGCTTGCCTATCTGATGAATGACGATTCCCTTCACCA
TAAAAGTGAATTGTTGATCAGTTATACCATATTCATATCGTGCTTTATTG
TTGCTTTGATCTACCTAATTATCACTCGTCGGCTAGCTATGCAAGCCAGC
TTTCTTCGCTCTTTCCGTAGAAGCACCAGTCGACATAAACAGAATAAAAG
CAGAAACAATAGACGAAGTAAAGTCGAGACTGTCGCTCTCTTAACCGCTT
GTATAGTCACCGTTTCGTTTCTGGTCTGTACTTTACCATCCGCCTGTTTA
CCGATTGTAAATAATGTTTCTAACACTATTCATACGATCAGTTtatgttt
tctggtctgtaattcAATTTGCAACCCAATTGTATACTTTTGGCGTGGAT
ATTGGCTTAAAGCTAAAAGACGGAAGAGTCTTGCAAGCGCTTTGACAGAC
CTATCGAAATCTAGAAGTTCGACACATTCGAATACGATATCGACAGTGGC
TCGATCAGCTGCCGTTGCCTGTATTCCGATTCGGGATGGATTTAATGTTA
TCGGACAATCGGGGAAATATGACCTCGATAATATGACTGTCATGGATATT
TTCGACTTTGATTCGATAAATCGATATCGTCGTTTTAATCGAAGTTATTA
TAATCAGAATCATGAATTTATTATGAGTCAAAGGGAATGATTTAAAGACC
AAATCGATCATTCAGAATTATATTAATCAAAActattttaacttgaattt
gtAAAGCAACCTAGATatcttattttttc Coding sequence (CDS) from alignment at sc0000222:36307..38485 >TCONS_00015945 ID=TCONS_00015945|Name=TCONS_00015945|organism=Clytia hemisphaerica|type=CDS|length=1467bp|location=Sequence derived from alignment at sc0000222:36307..38485 (Clytia hemisphaerica)
ATGTTGGTGGATGATTGTTTGAAATGCCAACGCTATTTTGAATACGAATT
TGAACAATTGGAGACTGGTCTTGAGGATCTACACTTTGTAAATTACACTG
GTGTATCGGCAGATTCTAACGAGACTGATTATCTTACAGGAAATTTTAAT
GGCAGCGATTTTCACGACTTGCCTTTAAATATGAACCATTCTTTAGAGCA
AGGTTTGAATGATTTCATCAACAAACTGAATAATTCTACAATCAACAATT
TCCTGAATTTTACCAATACTACAGGAGAAATGTGTTACGATCTGTATGAG
AAAGATTTATGTCACGAGGATTTGCTTGAACCATCAGATATCGATTATGA
CGGGTCACAAGACTATCATCACATTCTACCTCAAATCATTTTAGCCGTCA
TCGCGATGCTACTCAACATGGCTGAAATGCATTTAATGAAAAAACGAAAG
AAATATTTCCCGTCAGAATTACTGATGATTAGTTTAGCGGTGGCAGATTT
TTTGTTCAGTCTTTTAGTTGTACTTACGTTAACACTAACGTTGACGTATC
ATAATGACGGGCCAACGGGACGGATGGTGAACGAATGTCTCTACATGTTA
ACAAGCTTTTCAATCATTGCATCCATATTGCACGTTGTAGGAATCTCTAT
AGACCGTTTAATTGCAGTTCTGTTCCCGTTACGTCATCGCGTACGAACGG
ACGCTGTCAAAATGAAACGTGCCGTATTCTCAATCTGGTTATTAACTCTT
GCTTTCGTTGCATCTATATCGGTATATAAATATCATAGAGGGCTTGCCTA
TCTGATGAATGACGATTCCCTTCACCATAAAAGTGAATTGTTGATCAGTT
ATACCATATTCATATCGTGCTTTATTGTTGCTTTGATCTACCTAATTATC
ACTCGTCGGCTAGCTATGCAAGCCAGCTTTCTTCGCTCTTTCCGTAGAAG
CACCAGTCGACATAAACAGAATAAAAGCAGAAACAATAGACGAAGTAAAG
TCGAGACTGTCGCTCTCTTAACCGCTTGTATAGTCACCGTTTCGTTTCTG
GTCTGTACTTTACCATCCGCCTGTTTACCGATTGTAAATAATGTTTCTAA
CACTATTCATACGATCAGTTtatgttttctggtctgtaattcAATTTGCA
ACCCAATTGTATACTTTTGGCGTGGATATTGGCTTAAAGCTAAAAGACGG
AAGAGTCTTGCAAGCGCTTTGACAGACCTATCGAAATCTAGAAGTTCGAC
ACATTCGAATACGATATCGACAGTGGCTCGATCAGCTGCCGTTGCCTGTA
TTCCGATTCGGGATGGATTTAATGTTATCGGACAATCGGGGAAATATGAC
CTCGATAATATGACTGTCATGGATATTTTCGACTTTGATTCGATAAATCG
ATATCGTCGTTTTAATCGAAGTTATTATAATCAGAATCATGAATTTATTA
TGAGTCAAAGGGAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00015945-exon-sc0000222-1491911889:36307..38485 | TCONS_00015945-exon-sc0000222-1491911889:36307..38485 | Clytia hemisphaerica | exon |
| TCONS_00015945-exon-sc0000222-1510915933:36307..38485 | TCONS_00015945-exon-sc0000222-1510915933:36307..38485 | Clytia hemisphaerica | exon |
| TCONS_00015945-exon-sc0000222-1575043694:36307..38485 | TCONS_00015945-exon-sc0000222-1575043694:36307..38485 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000222 | supercontig | sc0000222:36307..38485 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
|
