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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015925 ID=TCONS_00015925|Name=TCONS_00015925|organism=Clytia hemisphaerica|type=transcript|length=1333bpRun BLAST on NCBI protein sequence of TCONS_00015925-protein >TCONS_00015925-protein ID=TCONS_00015925-protein|Name=TCONS_00015925-protein|organism=Clytia hemisphaerica|type=polypeptide|length=314bp MSELTKKTNGKKRAAKRKEEKMVESPPSSENEMSVSENESESERDQQMEARun BLAST on NCBI transcript from alignment at sc0000222:91018..114572- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00015925 ID=TCONS_00015925|Name=TCONS_00015925|organism=Clytia hemisphaerica|type=transcript|length=23555bp|location=Sequence derived from alignment at sc0000222:91018..114572- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000222:91018..114572- >TCONS_00015925 ID=TCONS_00015925|Name=TCONS_00015925|organism=Clytia hemisphaerica|type=CDS|length=9450bp|location=Sequence derived from alignment at sc0000222:91018..114572- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00015925 vs. Swiss-Prot (Human)
Match: BCCIP (BRCA2 and CDKN1A-interacting protein OS=Homo sapiens GN=BCCIP PE=1 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 7.540e-26 Identity = 79/269 (29.37%), Postives = 140/269 (52.04%), Query Frame = 3
Query: 216 DVEFEAFPPEENDFHGLKQLLLRPFVTLHVDVSDMSDLIISQKDMGSTIKIVDDEEDN--------VYGIVTILHMDRYKERPCIXXXXXXXXXXXXXXXTTSKMELI--FNN---KRVGYFINERFINLPDQLAPPFHNSIKSEFDQAIKQDKTNDIDYL-LFVSKTMRPTKAVPMKEGTSXXXXXXXXXXXXXXHVNEMREENEVDYTNFEEEIYFKASELSFSYCVTQATGFAHAGGWDFVDQPMNTYRTVFLVPKHKWKDILKEI 980
++EFEA+ +ND+ G+K+LL + F+ V+ ++++DL+I Q +GS IK D ED+ V+G +++L++ K C++++++ +L C+ S +E + F N K VG ++ERFIN+P Q+A P + ++ E A + +K Y L +SKT ++ G + ++ KKK + N EEE +++ + L F+Y V + + G W F D PM RTV L+P K +I+ ++
Sbjct: 58 NIEFEAYSLSDNDYDGIKKLLQQLFLKAPVNTAELTDLLIQQNHIGSVIKQTDVSEDSNDDMDEDEVFGFISLLNLTERKGTQCVEQIQELVLRFCEKNCEKSMVEQLDKFLNDTTKPVGLLLSERFINVPPQIALPMYQQLQKELAGAHRTNKPCGKCYFYLLISKTF-------VEAGKNNSKKKPSNKKKAALM-----------FANAEEEFFYEKAILKFNYSVQEESDTCLGGKWSFDDVPMTPLRTVMLIPGDKMNEIMDKL 308 The following BLAST results are available for this feature:
BLAST of TCONS_00015925 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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