TCONS_00015918 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015918
Unique NameTCONS_00015918
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2104

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015918 ID=TCONS_00015918|Name=TCONS_00015918|organism=Clytia hemisphaerica|type=transcript|length=2104bp
tCAGATtatatgtaattaaattttgGCATTGGACCAAAATAATGTCCTAA
AAATGTATACCAGATATGGACAGACAGTTCAAAAAGGGCGTGCGATGAAA
ATGCTATACGACATATGTTGAAATGGCTTTTGTGAACACTTCCCCGCAGa
gcattgaaaaattgttttcttcatCTGTATAAAAGGAAAGTTGGTTCAGT
AATATTATCAAACAGTTTCACCAAGCCTAAAACAAGAAGACTTGGGAAGC
AAGCAAGACACACACAGTACAAAGAAACTTACTCAAGGAAAAACGATGGA
AGCTATCTCTTTCAAATTGGTATGGGTCTCTATTTTGATTGGATGTATAG
GTGGGGTTTTCAAagatgctgaatcagcaaatcCACCAGCAGCAGCTTAC
AATTTAAGAATCCCTGATAAAGCTTGGAAAAATTGGGCTcaaaaatttga
gaagaaatataaagatgaaaaagaggaaaaagaaagatttcaaatttgga
aacAAAATGGAAAATATGTTGTGAATTTCAATCGAAAACAAGATAAAGAG
CCTGGGAacaataaaatgaaattgaagatGAACAAATTTGGTGATTTGAC
AAATGAAGAATACAGAAAATTCTACTTGAATTCCAAGCTGCAATCCTATG
TTAGACCACGTGACATCAAGCAACGTACATCTCAAAGAAAACGCAGGTCA
ACTACAACAGTAGAAAAAGACTGGAGAGACGAAGGAAAAGTTACCCCCGT
TAAAGATCAAGGCAGCTGTGGAAGCTGTTGGGCGTTTTCTACGACTGGGA
CGATTGTATCTCATTATGCTATCAAACACGGTCCATTAATTCCATTAAGT
GAACAGCAACTAGTTGACTGTTCAACAGAAAATAGTGGATGTAATGGCGG
TGTTGTTCAATGGGCATATAATTATGTCAAAGAAAAAACTGATGGACTTG
AATCGGGACATCAATATCCGTATGAAGCTATTgacaATAATTGCAGATAT
GATCATTCCAAAGCTAAAGTCACAATATCAGGTTATAAAGATATTCCCTT
TGCGGATGAAACGGAACAAGTCGCTGCTTTAAATAACCATGGCCCAATTT
CAGTTTGCATTGATGCCGGTCATCTTTCATTCCAACTTTATTCGAGCGGA
GTTTATTATGAACCGAACTGTAATCCCCATTCAATCAATCACGCAGTAAT
TGCTGTCGGCTTTGGTTGGGAAGGTGGTTCTGATTATTGGATTGTCAAAA
ATAGTTGGGGAACTGGCTGGGGTGACGGTGGATATATGAAAGTCTCACGA
AATCGAAACAACCATTGTGGCATTGCAACACAATCTTGCTATCCTATCAT
ATAATAAATAATTAAAGAAAGGATAGAAAAGACAAACAATATCCACATTT
CGATATCAATGGAAATGAATGGATATGAATGGAAAAAAACAGTAACGAAA
ATAATATTTGTTTCatatttaaatttcatttcgtTTTCAGTCGGAAAgta
taattttttaattgatcAAAAATTTAAGTGTCAaaattacgttttataat
aatTNTAAAAAAGCAgtaacaaaaataatatttgtttcatatttaaattt
catttcgtTTTCAGTAGGAAAgtataattttttaattgatcCTGATCAAG
TGTCAaaattacgttttataataattactttttattttcattgtatttCA
CAATTAGTATACAGGAATCAGGGTTTAACCCCGGTTTAACCTTTGAAAAT
AGTATACGGTTAAAATTTGCAGAGgttccttaaccctattcgtattaagg
gGGGGGGGGgctattttttgtactttttgtactttgtattttttgacttt
tcccAACTTTTATATAGCATCAATATGAAACACATTTCAACCCCTAatta
ttttcacaccttgagcatgatgacatttttgacaaGTAGGTGTCAATAAA
AGATGACACATTTTTTGCATAATTGcaattttaatgtcaaatacATTTAT
TTAGGTTTAGGACtataattttgtataaatagGACTCATTTTCTTGGGAT
TTTCAGTTAGATTTCGCCTTGTAAATCACAAGGATACTTTATTTAGCATG
GTGA
Run BLAST on NCBI

protein sequence of TCONS_00015918-protein

>TCONS_00015918-protein ID=TCONS_00015918-protein|Name=TCONS_00015918-protein|organism=Clytia hemisphaerica|type=polypeptide|length=352bp
MEAISFKLVWVSILIGCIGGVFKDAESANPPAAAYNLRIPDKAWKNWAQK
FEKKYKDEKEEKERFQIWKQNGKYVVNFNRKQDKEPGNNKMKLKMNKFGD
LTNEEYRKFYLNSKLQSYVRPRDIKQRTSQRKRRSTTTVEKDWRDEGKVT
PVKDQGSCGSCWAFSTTGTIVSHYAIKHGPLIPLSEQQLVDCSTENSGCN
GGVVQWAYNYVKEKTDGLESGHQYPYEAIDNNCRYDHSKAKVTISGYKDI
PFADETEQVAALNNHGPISVCIDAGHLSFQLYSSGVYYEPNCNPHSINHA
VIAVGFGWEGGSDYWIVKNSWGTGWGDGGYMKVSRNRNNHCGIATQSCYP
II
Run BLAST on NCBI

transcript from alignment at sc0000222:396419..407679+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015918 ID=TCONS_00015918|Name=TCONS_00015918|organism=Clytia hemisphaerica|type=transcript|length=11261bp|location=Sequence derived from alignment at sc0000222:396419..407679+ (Clytia hemisphaerica)
tCAGATtatatgtaattaaattttgGCATTGGACCAAAATAATGTCCTAA AAATGTATACCAGATATGGACAGACAGTTCAAAAAGGGCGTGCGATGAAA ATGCTATACGACATATGTTGAAATGGCTTTTGTGAACACTTCCCCGCAGa gcattgaaaaattgttttcttcatCTGTATAAAAGGAAAGTTGGTTCAGT AATATTATCAAACAGTTTCACCAAGCCTAAAACAAGAAGACTTGGGAAGC AAGCAAGACACACACAGTACAAAGAAACTTACTCAAGGAAAAACGATGGA AGCTATCTCTTTCAAATTGGTATGGGTCTCTATTTTGATTGGATGTATAG GTGGGGTTTTCAAagatgctgaatcagcaaatcCACCAGCAGCAGCTTAC AATTTAAGAATCCCTGATAAAGCTTGGAAAAATTGGGCTcaaaaatttga gaagaaatataaagatgaaaaagaggaaaaagaaagatttcaaatttgga aacAAAATGGAAAATATGTTGTGAATTTCAATCGAAAACAAGATAAAGAG CCTGGGAacaataaaatgaaattgaagatGAACAAATTTGGTGATTTGAC AAATGAAGAATACAGGTTTGACTTTGTTAAGattcaaatttatgaaaatt atgACTTATGAGAGATGCACAGGCCAAAGTTTTCAGTTCTGTTACATCTG CTGATACCTTTTCGGTAAAAGCTTAGTCAGAgaaaattttagtcacctcc cTGTAACCCCtgctaaaactggccttcctcAAGTCAGGATGACCACTCAG AACTTATTCAAATTCCAGGGCTTTTCCAGAAGCgtttcctattgataaaa aattcttaagattttgggataGAGTATGACCCAAAAATAATCTACTTATA CCCAATgcttttcataatttttgtgaaaaccaAGGATTGGAagacccacc atggttggatCTAACCAAAAGAATAATTCAATTTTACCCTCTTTTgattg gccaaaatttccatTAGTATACTGTAGACTGGGCTAAAAGAGGGGAGACG GCTAAGCGGAGAGATCAGTAAATTAAAACCGTTTATGGTTTCGTATCATC GATAAACTTATATTCTTAATTTCAACTATTCATGTCTCTTTCAATATCCG TCTTCATTGTTTAATTCTGCAGCTTTTATAGCTGTGAACGGAATGTCGTT AGTTCTAATTCTGGTAACAGATATTGGCCTTGGTCCGTATGTATGTCATT TGTACGTTTGTTGCCTTGTTAGTTTGCGGCGGTTTAATCGTCGATCGTTA TATAAGATATAATTTCAGCATGTTTCAGCATTTGCGTAGGTTTAATCGTC GATCGTTATGAGATATTGGTCTTGGTTGAACCACTTTCTGGGGCGGCCAG CTGGCTTTAAGCTCCAGCTGACAGTACAATACAAAGTTACAACCGATTAA AGCAAGAAACTTTCTTGTTAAAAGAGTGAGTGAATCTTTAATCTCCACCC TTTTTCACAGCCCATTAAGCTCTGCCCCCTGTTCAATATTGCTTCAAACT ATAACTCTAAGTCGTTATCAGAGGCCCCACCATGggaagaaagtttttga aaatgatctCTGTATTGCCTCATAGGGGGGGGTTGTAGgtgttcgaaata ccgttttcccgtcaaaatttttgctgaatcccggaatcccgaaaattgaa aaaataataacaccgtcacaccggcttgtacagggcaaaaatgggcctaa ataccgtcaccgtctgattttaaaataccgttttcccgtcaaaatttttg ctgaatcccggaatcccgaaaattgaaaaaataataacaccgtcacaccg gcttgtacagggcaaaaatgtgcctaaataccgtcaccgtctgattttaa aataccgttttcccgtctctttattcgtcaaatcccgtaataccgtacta aaaaaaggccaatcccgtcacaccgtaaaagtacaaaccccccgcTCATA GCAGCATGGAGCCCTGGAAAACTTGAGTTTGAAGAATAGAAATCTAGTAT TTTTagtatttaagtatttttacaCCATTTCCAAGTGTATACTGGAAAAA GACCcactttttccaaatttccagaATAATCAATAAGTACCAAACTTTTA TTACagtatattcaagtattttcaagtttttccaTTATCAGTGGTCACCC TGGATAAGGTAATCACTACGTTCTTTTTACCGTGTTTACCGTactttaat tttatttcttgGTTTTATATATAGAAAATTCTACTTGAATTCCAAGCTGC AATCCTATGTTAGACCACGTGACATCAAGCAACGTACATCTCAAAGAAAA CGCAGGTCAACTACAACAGTAGAAAAAGACTGGAGAGACGAAGGAAAAGT TACCCCCGTTAAAGATCAAGGCAGCTGTGGAAGCTGTTGGGCGTTTTCTA CGGtataaaattaatattttagGTTCCAAAGGGTGAAAGAATGCAATTTC AAAATCGATATCTGTTTTGTTCTCAGGTCATTTTTATGTTTACATGTGAG AGCAGGTTCAAAGATTCGGGGCGCTAGGGCGAGACAAATTGCACAAGGGG AACTAGAAAACCTTCATTTTTAGGAAGTTTTTGAAGTTAGTGCTTCTTGG GCGAAAACCCTGGGGTATATAGGCAAGTGAAGAATATAGGGATGTGCAAT CGTTTAGTTCGGAAAGTCAGTTCGCAAAACACCATAatattaagcagtta ttggacaaagtcgaatccaatatgcaaaaatattgggcgtgcgagaaaag atattggacgaggcttcgccgagttcaatatcttttctcgtagcccaata tttttgcatattggatgagactgcgtccaaataaatggtttattatccgt tcatcgctaaaatatttctcgtttccaagcataattccaatttataagaC CGTTaatctggtttcttggtagctttttattcaaaagtcttatttttatt ttgtgacgtaacgtcaaaaagaagatgctcaattgtcattgaactcgttg tgtgaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNtcaatttttgaaatatgtagcctccatg gaagctatatattcaaaaatattggacagcaaagaagccaatcaaacgtc gctatttacgcgcgtcggataataatcTTAAATATATTCCATACCAATGT CCCCATATTTTTACATGGAAAATATATGCCTTAAACTAAAGGAAAtcatt ttcgcgggaactaattttcacgttttttcgcggtttttcttTTCCAAACC CGCAAAAATGAGCCCGCTTAAAAATTTACGAGCTCGAAactgcaaaaatt aattcccgcaaaataCAGTGGTGACCCCCAGAATGCAGGTCTATATCATT CTCTCAGATAATTGATTACAAGTCGCAAGCAAGTTTTAgaagtcttttga ttgattgaGTTTTTAAAAAGgctacatttttttgaaaattaaagcaGATT CGGtcaaattttgtattcttttgCACCTTAATTTTGCAGTTTTGAGGACT TTGAGAAACgatatttttaggaaatttgaCTATCAGGCGTGATTACAGTT ACATTGTAGACAAGTCCTTAAAATAGGGTATAGGAAGTTGCGTATTTATA GAAGGAATTCAGAGAAAATAATTGGAAACAAATTCGTATTGTGGTATTTT GTCCAAAGCCGACGAATTGACACCAGCATTATGGGGgtcaaaagatttaa aaaattgacgtAAAATAGTGTAGAGGCCCACCAATTCTTAGATTCCGTGA CCacaaaatataatttcttttttattttaaagaataaTGTATTTAGTAAC ATTTTGGGAGAGGAGGAATGTGAAAAAATAATGTACAACAGACTTTACGA ATATTTAACTAGTAACGACATActatacaaaaaacaattcgGCTTTCAAC GTAAACATTCTACAGAACATGCTTTACTAGGATTAATCGACGAAATTTCA GACTCCTTCGAAAGAAATGAATTCACCATTGGTGTTTTCATTGACCTATC AAAGGCTTTTGACACTGTTGACCATAACATACTGACAGCAAAACTTGAAC GATACGGAGTGACTGACAAAAACTTAGACTGGNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaaaaaaaaa aaaaaaaaaaaaaaaaaagttagatgGTGGAAAATGTTTATGTGCCAAAA AGTGGCGTCATAGGCAAAACTGTAAAGGGCCATTATAAAAAGGTCGATTT TGCAAAGTCAAAACAAACGGAAACAATTGATACCATCTGATAGAGCtaga aattctgagcaaaaaaatgtattacaacaagTCCAATACTCAAGCGTATC AAGAAATACAGCCCTTTTAAACCAAAAAAGGGTGATTtaaccaaatttga caaaaaatgagaaaatagaAATTGACGGAATCTCAATTGAGACACAAACG AAAAACTTCTAATATATCTTAATTTAGTGATGCATTAGGCTCAGAATACA ACAATATTATNTTATTTTATGCAGCAAACGAAAAACTTCTGATATATCTT AATTAAGTGATGTATTAGGCTCAGAATACAacaatattatcaaaatattt cgaAGTGTCAagattttgatcaacaaaagGTAACCAAAATAGTCAACaat tctattttaaaaacctttgaaatTTATCTTTTAGTGGaccttaaaatttt aagaaaactatcTAAAGTAGATTTTTAGAAATCGACAAAAACATCAACCA GCATTCTGAGGGGCggtaaaaatgaaattcactttgtgacgtcattttaa ttCGCAAGAAATGATACTTAAAAGTGTTatttcgagaaaaaaacatttgg gAAAGAATCTTAAGATGCTTGAATTCGTAGATACTAAACACCGAAACGGG TGGGAAACTAGTGGAAACGAATGCAAACGGGTGGAAACAAATGGtgaaac gagtggaaacgagtggtgaaacgggtggaaacgaatgaaaaacaactgga aACACAGTGGAAACGAGTGCTAGGGGGTAAAGATAATTTGGCATTCGCGT TCTATTCAGGTTCTAATGGTGATTGGTGTCATATACTTGATGGACCTTTA CGTTTTGGCGAAAATATATTGTATTAAGAAGTATAAAAATGATGTTTGGA TAAACAAATTTTCGTTACTTTTTGCTCACNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNtgcaggcatatcataaaatcca gctaaaaccctgtaaaatcccaaaatcttaaatttagcataacttttgat ctaggcatccaattgacttcaaattttgacaggctttaggtatcaatgat aagttttcaaaaattttttaaaaaatttcaaaaactgctgacgtcattat aaatgacgtcattgttttttgaaataatttactcattttctgcatggatt ttaagcctcgattttattagtatatttaaaaccggcaaatatgttaaagg tattctttttggcttttagaaattcaaaacagaattgaaaaatctccatt ctttcgtttttaattgctattttattgaatagtactttttcattggtcag cgataattgtgaaactttgtgatgacgtcatcacctttatgatgacgtca tcaacccaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNacatttctgc caaatttcaagtccataccttttctagataaaaagttatgcaaggctggt ggaaaacacccccccttgagaatacaaaatacgaaaaagcctgataataa tagggttaaagatACAATTTTATATAAAGTGATAACAGCACACTCATggg attttgaatttattaaaaAGAGTATTGTTGCattaaacagactgtacctt tataaccataaaggttggcgagtccagtcaaaacacagatttgatctgca gcgtcacgcttcaccttgccTCAATAGTTAactcaaattgaaacaaacca ttgccaaacaaactctggtagtttttttattatttcagagaAGTAAATGC TATGTTATGGCACACAAATTGTTGTGTGTTTTTTCCCAAACGAATTCCAA TTAGAGAAAATCTTTATTTCGATTGGGATAAAAAATGTGatctaaaatat attaaaaaacttACCGCTTACAAGACTTCATCTTTCCTGACAAACACCGT AAACAAGCCAAGATTGGTCGCTCTCGCTGAAAGTAAACAAACACTGTAGT TAGTGTTATAGTTTGGAATGCAAAAAGCTACTTGTCTTATTAGGAAAAAA TCTTCCCTTATATTAAAAAGACTTTGCAGTGATCATTCACATCCtaagaa aatatcaagaatatatGCTTTGCAGCAACAACCATGTTTCTTTGTCATAA AAAATCCAACCATAAAAAACATACaacatcaaaacacaaaagtatctgaa atactggatttggtttcaaatgaaaataagcTGCTTTACTTACTACCGAA AAGAAAATCGCTTCCATTCTGTTATCAAAGCAGCGTTCTGTTTTTAACAA TGTTTTAAGaggcatttgaaaaaaatttattagttTGATATGAACCCCTA gcactcgtttccactcgttttcatgtgtttccagttgtttttcattcgtt tccacccgtttcgccACTTGTTTCCACTCGTTTCACcactcgtttccacc cgtttgcaTTCGTTTCCACTAGTTTCCCACCCGTTTCGGGGTTTAGTATC TACGGCTTGAACTGTCTTCAGAACaaacattttaaatttatttgcaAAGC ACAAAAAATGAGAGCAAATGTAAATTTGACCAGCATTCTGGTGGTCCACC ACTCTAATTGAAAAAGTGCCATAAGAGAAAATCGATAACAGATTTCAAAG CAAATAATTTcaggcttttttcttctgaaacaTGATTTTCAGAAGGTAAT CAAagaataaaaaaggaaaatagaaaataatagGAAAATAGAACGCGGAA TTTAATTCCCGCTAAAAATTCAGAATCAAGTGAATCACGAAAATTAGGtc ctggttttttttttttgaaaattagttcccatgaaaattagttcttttaa aaaGGTAAATTTCTTCTTATAAACAGACTGGGACGATTGTATCTCATTAT GCTATCAAACACGGTCCATTAATTCCATTAAGTGAACAGCAACTAGTTGA CTGTTCAACAGAAAATAGTGGATGTAATGGCGGTGTTGTTCAATGGGCAT ATAATTATGTCAAAGAAAAAACTGATGGACTTGAATCGGGACATCAATAT CCGTATGAAGCTATTGTAAGTAACTTtcaataccaacttttttttcatta ctTCACTGCCTTGTTCTGGAAACGTTGCTATGATAATTAGGCAATTGGTT CTCAAATGAGTTACAGTATAAGAAGTGTGTTCTATTTCCAATCTCTGTGA ATGACTGACGGAATTACAACAAACTCACGGttttaatataacaatagcgt tcagtttgaggtcgttgttgttattttctgcccgcgtagtttcattattc gcccgatagtgtcatttgggcccgacgcgaagcggagggcgcaaatggca ctagagggctaataatcaaattgCAAGGGTAGAATTAATGACATcaacga acgaaaacttaacgctattactattattatccatatcagacattcaaaca acgtttttttctagcgtcaaccAATTCTTTTCGCttaatgcaatgtcttc aacaaatttttagcaccttgcgagcgggctgcaaatgaccaaaaagtgtt tttttctgacgttagtttagtctcttcgcttcaatgcaacgacttcaatc ccattccgagcgggccgcaaatgacgttattgccCTATACCCGGGCCGTT AATGATATTTTAGCCCTCTGATGCCTGGCGCTTTAGTTTCCTCAGCGTgg gtatgacaatttgagtcacaaaacctttcaataccaCCCACCGATTGAAC CTTTAACGgtttacttaatgaccgctatatggataataattatGATTATG ATATTCTTTTCTAATAccctttttatttttcaggacaATAATTGCAGATA TGATCATTCCAAAGCTAAAGTCACAATATCAGGTTATAAAGATATTCCCT TTGCGGATGAAACGGAACAAGTCGCTGCTTTAAATAACCATGGCCCAATT TCAGTTTGCATTGATGCCGGTCATCTTTCATTCCAACTTTATTCGAGCGG AGTTTATTATGAACCGAACTGTAATCCCCATTCAATCAATCACGCAGTAA TTGCTGTCGGCTTTGGTTGGGAAGGTGGTTCTGATTATTGGATTGTCAAA AATAGGTTAGTTTCGACGATTATATTTGTAAGGCACAACATCAACATTTA TCCAAtcaaaaagtgctgacgtcgTCCTAGTCTTAGAGACTTACCTTCTG GattttttccctaaatttttaTGCTTGAAAGGCAAAAGGTTCTGAAATAT AATGTGGTAGTCCGATTTTTCTTTTGCGCACTCagcatttaaaacaaaat aatttgcaaCATTTCTCTGCATACCCAAATTCTTTTGTAATTTGTGATGA GTCAGCtatcattttcagaattttgcaTCGGATACATTTAAGAGACATTG ATTTTAAATTGAGTTtgcttatcaaaaaaaggtttaaaatttttcccatC TTTTTTTACAGTTGGGGAACTGGCTGGGGTGACGGTGGATATATGAAAGT CTCACGAAATCGAAACAACCATTGTGGCATTGCAACACAATCTTGCTATC CTATCATATAATAAATAATTAAAGAAAGGATAGAAAAGACAAACAATATC CACATTTCGATATCAATGGAAATGAATGGATATGAATGGAAAAAAACAGT AACGAAAATAATATTTGTTTCatatttaaatttcatttcgtTTTCAGTCG GAAAgtataattttttaattgatcAAAAATTTAAGTGTCAaaattacgtt ttataataatTNTAAAAAAGCAgtaacaaaaataatatttgtttcatatt taaatttcatttcgtTTTCAGTAGGAAAgtataattttttaattgatcCT GATCAAGTGTCAaaattacgttttataataattactttttattttcattg tatttCACAATTAGTATACAGGAATCAGGGTTTAACCCCGGTTTAACCTT TGAAAATAGTATACGGTTAAAATTTGCAGAGgttccttaaccctattcgt attaagggGGGGGGGGgctattttttgtactttttgtactttgtattttt tgacttttcccAACTTTTATATAGCATCAATATGAAACACATTTCAACCC CTAattattttcacaccttgagcatgatgacatttttgacaaGTAGGTGT CAATAAAAGATGACACATTTTTTGCATAATTGcaattttaatgtcaaata cATTTATTTAGGTTTAGGACtataattttgtataaatagGACTCATTTTC TTGGGATTTTCAGTTAGATTTCGCCTTGTAAATCACAAGGATACTTTATT TAGCATGGTGA

Coding sequence (CDS) from alignment at sc0000222:396419..407679+

>TCONS_00015918 ID=TCONS_00015918|Name=TCONS_00015918|organism=Clytia hemisphaerica|type=CDS|length=5295bp|location=Sequence derived from alignment at sc0000222:396419..407679+ (Clytia hemisphaerica)
ATGGAAGCTATCTCTTTCAAATTGGTATGGGTCTCTATTTTGATTGGATG
TATAGGTGGGGTTTTCAAagatgctgaatcagcaaatcCACCAGCAGCAG
CTTACAATTTAAGAATCCCTGATAAAGCTTGGAAAAATTGGGCTcaaaaa
tttgagaagaaatataaagatgaaaaagaggaaaaagaaagatttcaaat
ttggaaacAAAATGGAAAATATGTTGTGAATTTCAATCGAAAACAAGATA
AAGAGCCTGGGAacaataaaatgaaattgaagatGAACAAATTTGGTGAT
TTGACAAATGAAGAATACAGAAAATTCTACTTGAATTCCAAGCTGCAATC
CTATGTTAGACCACGTGACATCAAGCAACGTACATCTCAAAGAAAACGCA
GGTCAACTACAACAGTAGAAAAAGACTGGAGAGACGAAGGAAAAGTTACC
CCCGTTAAAGATCAAGGCAGCTGTGGAAGCTGTTGGGCGTTTTCTACGAC
TGGGACGATTGTATCTCATTATGCTATCAAACACGGTCCATTAATTCCAT
TAAGTGAACAGCAACTAGTTGACTGTTCAACAGAAAATAGTGGATGTAAT
GGCGGTGTTGTTCAATGGGCATATAATTATGTCAAAGAAAAAACTGATGG
ACTTGAATCGGGACATCAATATCCGTATGAAGCTATTgacaATAATTGCA
GATATGATCATTCCAAAGCTAAAGTCACAATATCAGGTTATAAAGATATT
CCCTTTGCGGATGAAACGGAACAAGTCGCTGCTTTAAATAACCATGGCCC
AATTTCAGTTTGCATTGATGCCGGTCATCTTTCATTCCAACTTTATTCGA
GCGGAGTTTATTATGAACCGAACTGTAATCCCCATTCAATCAATCACGCA
GTAATTGCTGTCGGCTTTGGTTGGGAAGGTGGTTCTGATTATTGGATTGT
CAAAAATAGTTGGGGAACTGGCTGGGGTGACGGTGGATATATGAAAGTCT
CACGAAATCGAAACAACCATTGTGGCATTGCAACACAATCTTGCTATCCT
ATCATATAAATGGAAGCTATCTCTTTCAAATTGGTATGGGTCTCTATTTT
GATTGGATGTATAGGTGGGGTTTTCAAagatgctgaatcagcaaatcCAC
CAGCAGCAGCTTACAATTTAAGAATCCCTGATAAAGCTTGGAAAAATTGG
GCTcaaaaatttgagaagaaatataaagatgaaaaagaggaaaaagaaag
atttcaaatttggaaacAAAATGGAAAATATGTTGTGAATTTCAATCGAA
AACAAGATAAAGAGCCTGGGAacaataaaatgaaattgaagatGAACAAA
TTTGGTGATTTGACAAATGAAGAATACAGAAAATTCTACTTGAATTCCAA
GCTGCAATCCTATGTTAGACCACGTGACATCAAGCAACGTACATCTCAAA
GAAAACGCAGGTCAACTACAACAGTAGAAAAAGACTGGAGAGACGAAGGA
AAAGTTACCCCCGTTAAAGATCAAGGCAGCTGTGGAAGCTGTTGGGCGTT
TTCTACGACTGGGACGATTGTATCTCATTATGCTATCAAACACGGTCCAT
TAATTCCATTAAGTGAACAGCAACTAGTTGACTGTTCAACAGAAAATAGT
GGATGTAATGGCGGTGTTGTTCAATGGGCATATAATTATGTCAAAGAAAA
AACTGATGGACTTGAATCGGGACATCAATATCCGTATGAAGCTATTgaca
ATAATTGCAGATATGATCATTCCAAAGCTAAAGTCACAATATCAGGTTAT
AAAGATATTCCCTTTGCGGATGAAACGGAACAAGTCGCTGCTTTAAATAA
CCATGGCCCAATTTCAGTTTGCATTGATGCCGGTCATCTTTCATTCCAAC
TTTATTCGAGCGGAGTTTATTATGAACCGAACTGTAATCCCCATTCAATC
AATCACGCAGTAATTGCTGTCGGCTTTGGTTGGGAAGGTGGTTCTGATTA
TTGGATTGTCAAAAATAGTTGGGGAACTGGCTGGGGTGACGGTGGATATA
TGAAAGTCTCACGAAATCGAAACAACCATTGTGGCATTGCAACACAATCT
TGCTATCCTATCATATAAATGGAAGCTATCTCTTTCAAATTGGTATGGGT
CTCTATTTTGATTGGATGTATAGGTGGGGTTTTCAAagatgctgaatcag
caaatcCACCAGCAGCAGCTTACAATTTAAGAATCCCTGATAAAGCTTGG
AAAAATTGGGCTcaaaaatttgagaagaaatataaagatgaaaaagagga
aaaagaaagatttcaaatttggaaacAAAATGGAAAATATGTTGTGAATT
TCAATCGAAAACAAGATAAAGAGCCTGGGAacaataaaatgaaattgaag
atGAACAAATTTGGTGATTTGACAAATGAAGAATACAGAAAATTCTACTT
GAATTCCAAGCTGCAATCCTATGTTAGACCACGTGACATCAAGCAACGTA
CATCTCAAAGAAAACGCAGGTCAACTACAACAGTAGAAAAAGACTGGAGA
GACGAAGGAAAAGTTACCCCCGTTAAAGATCAAGGCAGCTGTGGAAGCTG
TTGGGCGTTTTCTACGACTGGGACGATTGTATCTCATTATGCTATCAAAC
ACGGTCCATTAATTCCATTAAGTGAACAGCAACTAGTTGACTGTTCAACA
GAAAATAGTGGATGTAATGGCGGTGTTGTTCAATGGGCATATAATTATGT
CAAAGAAAAAACTGATGGACTTGAATCGGGACATCAATATCCGTATGAAG
CTATTgacaATAATTGCAGATATGATCATTCCAAAGCTAAAGTCACAATA
TCAGGTTATAAAGATATTCCCTTTGCGGATGAAACGGAACAAGTCGCTGC
TTTAAATAACCATGGCCCAATTTCAGTTTGCATTGATGCCGGTCATCTTT
CATTCCAACTTTATTCGAGCGGAGTTTATTATGAACCGAACTGTAATCCC
CATTCAATCAATCACGCAGTAATTGCTGTCGGCTTTGGTTGGGAAGGTGG
TTCTGATTATTGGATTGTCAAAAATAGTTGGGGAACTGGCTGGGGTGACG
GTGGATATATGAAAGTCTCACGAAATCGAAACAACCATTGTGGCATTGCA
ACACAATCTTGCTATCCTATCATATAAATGGAAGCTATCTCTTTCAAATT
GGTATGGGTCTCTATTTTGATTGGATGTATAGGTGGGGTTTTCAAagatg
ctgaatcagcaaatcCACCAGCAGCAGCTTACAATTTAAGAATCCCTGAT
AAAGCTTGGAAAAATTGGGCTcaaaaatttgagaagaaatataaagatga
aaaagaggaaaaagaaagatttcaaatttggaaacAAAATGGAAAATATG
TTGTGAATTTCAATCGAAAACAAGATAAAGAGCCTGGGAacaataaaatg
aaattgaagatGAACAAATTTGGTGATTTGACAAATGAAGAATACAGAAA
ATTCTACTTGAATTCCAAGCTGCAATCCTATGTTAGACCACGTGACATCA
AGCAACGTACATCTCAAAGAAAACGCAGGTCAACTACAACAGTAGAAAAA
GACTGGAGAGACGAAGGAAAAGTTACCCCCGTTAAAGATCAAGGCAGCTG
TGGAAGCTGTTGGGCGTTTTCTACGACTGGGACGATTGTATCTCATTATG
CTATCAAACACGGTCCATTAATTCCATTAAGTGAACAGCAACTAGTTGAC
TGTTCAACAGAAAATAGTGGATGTAATGGCGGTGTTGTTCAATGGGCATA
TAATTATGTCAAAGAAAAAACTGATGGACTTGAATCGGGACATCAATATC
CGTATGAAGCTATTgacaATAATTGCAGATATGATCATTCCAAAGCTAAA
GTCACAATATCAGGTTATAAAGATATTCCCTTTGCGGATGAAACGGAACA
AGTCGCTGCTTTAAATAACCATGGCCCAATTTCAGTTTGCATTGATGCCG
GTCATCTTTCATTCCAACTTTATTCGAGCGGAGTTTATTATGAACCGAAC
TGTAATCCCCATTCAATCAATCACGCAGTAATTGCTGTCGGCTTTGGTTG
GGAAGGTGGTTCTGATTATTGGATTGTCAAAAATAGTTGGGGAACTGGCT
GGGGTGACGGTGGATATATGAAAGTCTCACGAAATCGAAACAACCATTGT
GGCATTGCAACACAATCTTGCTATCCTATCATATAAATGGAAGCTATCTC
TTTCAAATTGGTATGGGTCTCTATTTTGATTGGATGTATAGGTGGGGTTT
TCAAagatgctgaatcagcaaatcCACCAGCAGCAGCTTACAATTTAAGA
ATCCCTGATAAAGCTTGGAAAAATTGGGCTcaaaaatttgagaagaaata
taaagatgaaaaagaggaaaaagaaagatttcaaatttggaaacAAAATG
GAAAATATGTTGTGAATTTCAATCGAAAACAAGATAAAGAGCCTGGGAac
aataaaatgaaattgaagatGAACAAATTTGGTGATTTGACAAATGAAGA
ATACAGAAAATTCTACTTGAATTCCAAGCTGCAATCCTATGTTAGACCAC
GTGACATCAAGCAACGTACATCTCAAAGAAAACGCAGGTCAACTACAACA
GTAGAAAAAGACTGGAGAGACGAAGGAAAAGTTACCCCCGTTAAAGATCA
AGGCAGCTGTGGAAGCTGTTGGGCGTTTTCTACGACTGGGACGATTGTAT
CTCATTATGCTATCAAACACGGTCCATTAATTCCATTAAGTGAACAGCAA
CTAGTTGACTGTTCAACAGAAAATAGTGGATGTAATGGCGGTGTTGTTCA
ATGGGCATATAATTATGTCAAAGAAAAAACTGATGGACTTGAATCGGGAC
ATCAATATCCGTATGAAGCTATTgacaATAATTGCAGATATGATCATTCC
AAAGCTAAAGTCACAATATCAGGTTATAAAGATATTCCCTTTGCGGATGA
AACGGAACAAGTCGCTGCTTTAAATAACCATGGCCCAATTTCAGTTTGCA
TTGATGCCGGTCATCTTTCATTCCAACTTTATTCGAGCGGAGTTTATTAT
GAACCGAACTGTAATCCCCATTCAATCAATCACGCAGTAATTGCTGTCGG
CTTTGGTTGGGAAGGTGGTTCTGATTATTGGATTGTCAAAAATAGTTGGG
GAACTGGCTGGGGTGACGGTGGATATATGAAAGTCTCACGAAATCGAAAC
AACCATTGTGGCATTGCAACACAATCTTGCTATCCTATCATATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008890XLOC_008890Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015918-exon-sc0000222-1491911889:396419..397033TCONS_00015918-exon-sc0000222-1491911889:396419..397033Clytia hemisphaericaexon
TCONS_00015918-exon-sc0000222-1510915933:396419..397033TCONS_00015918-exon-sc0000222-1510915933:396419..397033Clytia hemisphaericaexon
TCONS_00015918-exon-sc0000222-1575043694:396419..397033TCONS_00015918-exon-sc0000222-1575043694:396419..397033Clytia hemisphaericaexon
TCONS_00015918-exon-sc0000222-1491911889:398693..398870TCONS_00015918-exon-sc0000222-1491911889:398693..398870Clytia hemisphaericaexon
TCONS_00015918-exon-sc0000222-1510915933:398693..398870TCONS_00015918-exon-sc0000222-1510915933:398693..398870Clytia hemisphaericaexon
TCONS_00015918-exon-sc0000222-1575043694:398693..398870TCONS_00015918-exon-sc0000222-1575043694:398693..398870Clytia hemisphaericaexon
TCONS_00015918-exon-sc0000222-1491911889:405245..405433TCONS_00015918-exon-sc0000222-1491911889:405245..405433Clytia hemisphaericaexon
TCONS_00015918-exon-sc0000222-1510915933:405245..405433TCONS_00015918-exon-sc0000222-1510915933:405245..405433Clytia hemisphaericaexon
TCONS_00015918-exon-sc0000222-1575043694:405245..405433TCONS_00015918-exon-sc0000222-1575043694:405245..405433Clytia hemisphaericaexon
TCONS_00015918-exon-sc0000222-1491911889:406202..406473TCONS_00015918-exon-sc0000222-1491911889:406202..406473Clytia hemisphaericaexon
TCONS_00015918-exon-sc0000222-1510915933:406202..406473TCONS_00015918-exon-sc0000222-1510915933:406202..406473Clytia hemisphaericaexon
TCONS_00015918-exon-sc0000222-1575043694:406202..406473TCONS_00015918-exon-sc0000222-1575043694:406202..406473Clytia hemisphaericaexon
TCONS_00015918-exon-sc0000222-1491911889:406830..407679TCONS_00015918-exon-sc0000222-1491911889:406830..407679Clytia hemisphaericaexon
TCONS_00015918-exon-sc0000222-1510915933:406830..407679TCONS_00015918-exon-sc0000222-1510915933:406830..407679Clytia hemisphaericaexon
TCONS_00015918-exon-sc0000222-1575043694:406830..407679TCONS_00015918-exon-sc0000222-1575043694:406830..407679Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015918-proteinTCONS_00015918-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000222supercontigsc0000222:396419..407679 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0469186 0.0934722 0 0.0414774 1.62402 0.694815 0.142905 0.408653 0.288632 0.686115 0 0.380592 16.44 13.1162 0.246072 0.217125 1.19663 1.37993 0.150264 0.340584 0.138462 0 0.0666876 0.12042 0 0.241267 0 0.0761194 0.0415594 0.0770047
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000668Peptidase_C1A_C
IPR013201Prot_inhib_I29
IPR025661Pept_asp_AS
IPR000169Pept_cys_AS
Vocabulary: Biological Process
TermDefinition
GO:0006508proteolysis
Vocabulary: Molecular Function
TermDefinition
GO:0008234cysteine-type peptidase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006508 proteolysis
molecular_function GO:0008234 cysteine-type peptidase activity
Blast
BLAST of TCONS_00015918 vs. Swiss-Prot (Human)
Match: CATL1 (Cathepsin L1 OS=Homo sapiens GN=CTSL PE=1 SV=2)

HSP 1 Score: 238.81 bits (608), Expect = 1.772e-71
Identity = 127/293 (43.34%), Postives = 182/293 (62.12%), Query Frame = 2
Query:  485 RFQIWKQNGKYVVNFNRKQDKEPGNNKMKLKMNKFGDLTNEEYRKFYLNSKLQSYVRPRDIXXXXXXXXXXXXXXVEKDWRDEGKVTPVKDQGSCGSCWAFSTTGTIVSHYAIKHGPLIPLSEQQLVDCSTE--NSGCNGGVVQWAYNYVKEKTDGLESGHQYPYEAIDNNCRYDHSKAKVTISGYKDIPFADETEQVAALNNHGPISVCIDAGHLSFQLYSSGVYYEPNCNPHSINHAVIAVGFGWEG----GSDYWIVKNSWGTGWGDGGYMKVSRNRNNHCGIATQSCYP 1345
            R  +W++N K +   N  Q+   G +   + MN FGD+T+EE+R+  + +  Q+  +PR  K         +  +V  DWR++G VTPVK+QG CGSCWAFS TG +      K G LI LSEQ LVDCS    N GCNGG++ +A+ YV++   GL+S   YPYEA + +C+Y+   +    +G+ DIP   E   + A+   GPISV IDAGH SF  Y  G+Y+EP+C+   ++H V+ VG+G+E      + YW+VKNSWG  WG GGY+K++++R NHCGIA+ + YP
Sbjct:   48 RRAVWEKNMKMIELHN--QEYREGKHSFTMAMNAFGDMTSEEFRQ--VMNGFQNR-KPRKGKVFQEPLFYEAPRSV--DWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQD-NGGLDSEESYPYEATEESCKYNPKYSVANDTGFVDIP-KQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYP 331          
The following BLAST results are available for this feature:
BLAST of TCONS_00015918 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CATL11.772e-7143.34Cathepsin L1 OS=Homo sapiens GN=CTSL PE=1 SV=2[more]
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