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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015918 ID=TCONS_00015918|Name=TCONS_00015918|organism=Clytia hemisphaerica|type=transcript|length=2104bp tCAGATtatatgtaattaaattttgGCATTGGACCAAAATAATGTCCTAA AAATGTATACCAGATATGGACAGACAGTTCAAAAAGGGCGTGCGATGAAA ATGCTATACGACATATGTTGAAATGGCTTTTGTGAACACTTCCCCGCAGa gcattgaaaaattgttttcttcatCTGTATAAAAGGAAAGTTGGTTCAGT AATATTATCAAACAGTTTCACCAAGCCTAAAACAAGAAGACTTGGGAAGC AAGCAAGACACACACAGTACAAAGAAACTTACTCAAGGAAAAACGATGGA AGCTATCTCTTTCAAATTGGTATGGGTCTCTATTTTGATTGGATGTATAG GTGGGGTTTTCAAagatgctgaatcagcaaatcCACCAGCAGCAGCTTAC AATTTAAGAATCCCTGATAAAGCTTGGAAAAATTGGGCTcaaaaatttga gaagaaatataaagatgaaaaagaggaaaaagaaagatttcaaatttgga aacAAAATGGAAAATATGTTGTGAATTTCAATCGAAAACAAGATAAAGAG CCTGGGAacaataaaatgaaattgaagatGAACAAATTTGGTGATTTGAC AAATGAAGAATACAGAAAATTCTACTTGAATTCCAAGCTGCAATCCTATG TTAGACCACGTGACATCAAGCAACGTACATCTCAAAGAAAACGCAGGTCA ACTACAACAGTAGAAAAAGACTGGAGAGACGAAGGAAAAGTTACCCCCGT TAAAGATCAAGGCAGCTGTGGAAGCTGTTGGGCGTTTTCTACGACTGGGA CGATTGTATCTCATTATGCTATCAAACACGGTCCATTAATTCCATTAAGT GAACAGCAACTAGTTGACTGTTCAACAGAAAATAGTGGATGTAATGGCGG TGTTGTTCAATGGGCATATAATTATGTCAAAGAAAAAACTGATGGACTTG AATCGGGACATCAATATCCGTATGAAGCTATTgacaATAATTGCAGATAT GATCATTCCAAAGCTAAAGTCACAATATCAGGTTATAAAGATATTCCCTT TGCGGATGAAACGGAACAAGTCGCTGCTTTAAATAACCATGGCCCAATTT CAGTTTGCATTGATGCCGGTCATCTTTCATTCCAACTTTATTCGAGCGGA GTTTATTATGAACCGAACTGTAATCCCCATTCAATCAATCACGCAGTAAT TGCTGTCGGCTTTGGTTGGGAAGGTGGTTCTGATTATTGGATTGTCAAAA ATAGTTGGGGAACTGGCTGGGGTGACGGTGGATATATGAAAGTCTCACGA AATCGAAACAACCATTGTGGCATTGCAACACAATCTTGCTATCCTATCAT ATAATAAATAATTAAAGAAAGGATAGAAAAGACAAACAATATCCACATTT CGATATCAATGGAAATGAATGGATATGAATGGAAAAAAACAGTAACGAAA ATAATATTTGTTTCatatttaaatttcatttcgtTTTCAGTCGGAAAgta taattttttaattgatcAAAAATTTAAGTGTCAaaattacgttttataat aatTNTAAAAAAGCAgtaacaaaaataatatttgtttcatatttaaattt catttcgtTTTCAGTAGGAAAgtataattttttaattgatcCTGATCAAG TGTCAaaattacgttttataataattactttttattttcattgtatttCA CAATTAGTATACAGGAATCAGGGTTTAACCCCGGTTTAACCTTTGAAAAT AGTATACGGTTAAAATTTGCAGAGgttccttaaccctattcgtattaagg gGGGGGGGGgctattttttgtactttttgtactttgtattttttgacttt tcccAACTTTTATATAGCATCAATATGAAACACATTTCAACCCCTAatta ttttcacaccttgagcatgatgacatttttgacaaGTAGGTGTCAATAAA AGATGACACATTTTTTGCATAATTGcaattttaatgtcaaatacATTTAT TTAGGTTTAGGACtataattttgtataaatagGACTCATTTTCTTGGGAT TTTCAGTTAGATTTCGCCTTGTAAATCACAAGGATACTTTATTTAGCATG GTGA Run BLAST on NCBI protein sequence of TCONS_00015918-protein >TCONS_00015918-protein ID=TCONS_00015918-protein|Name=TCONS_00015918-protein|organism=Clytia hemisphaerica|type=polypeptide|length=352bp
MEAISFKLVWVSILIGCIGGVFKDAESANPPAAAYNLRIPDKAWKNWAQK FEKKYKDEKEEKERFQIWKQNGKYVVNFNRKQDKEPGNNKMKLKMNKFGD LTNEEYRKFYLNSKLQSYVRPRDIKQRTSQRKRRSTTTVEKDWRDEGKVT PVKDQGSCGSCWAFSTTGTIVSHYAIKHGPLIPLSEQQLVDCSTENSGCN GGVVQWAYNYVKEKTDGLESGHQYPYEAIDNNCRYDHSKAKVTISGYKDI PFADETEQVAALNNHGPISVCIDAGHLSFQLYSSGVYYEPNCNPHSINHA VIAVGFGWEGGSDYWIVKNSWGTGWGDGGYMKVSRNRNNHCGIATQSCYP II Run BLAST on NCBI transcript from alignment at sc0000222:396419..407679+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00015918 ID=TCONS_00015918|Name=TCONS_00015918|organism=Clytia hemisphaerica|type=transcript|length=11261bp|location=Sequence derived from alignment at sc0000222:396419..407679+ (Clytia hemisphaerica) tCAGATtatatgtaattaaattttgGCATTGGACCAAAATAATGTCCTAA
AAATGTATACCAGATATGGACAGACAGTTCAAAAAGGGCGTGCGATGAAA
ATGCTATACGACATATGTTGAAATGGCTTTTGTGAACACTTCCCCGCAGa
gcattgaaaaattgttttcttcatCTGTATAAAAGGAAAGTTGGTTCAGT
AATATTATCAAACAGTTTCACCAAGCCTAAAACAAGAAGACTTGGGAAGC
AAGCAAGACACACACAGTACAAAGAAACTTACTCAAGGAAAAACGATGGA
AGCTATCTCTTTCAAATTGGTATGGGTCTCTATTTTGATTGGATGTATAG
GTGGGGTTTTCAAagatgctgaatcagcaaatcCACCAGCAGCAGCTTAC
AATTTAAGAATCCCTGATAAAGCTTGGAAAAATTGGGCTcaaaaatttga
gaagaaatataaagatgaaaaagaggaaaaagaaagatttcaaatttgga
aacAAAATGGAAAATATGTTGTGAATTTCAATCGAAAACAAGATAAAGAG
CCTGGGAacaataaaatgaaattgaagatGAACAAATTTGGTGATTTGAC
AAATGAAGAATACAGGTTTGACTTTGTTAAGattcaaatttatgaaaatt
atgACTTATGAGAGATGCACAGGCCAAAGTTTTCAGTTCTGTTACATCTG
CTGATACCTTTTCGGTAAAAGCTTAGTCAGAgaaaattttagtcacctcc
cTGTAACCCCtgctaaaactggccttcctcAAGTCAGGATGACCACTCAG
AACTTATTCAAATTCCAGGGCTTTTCCAGAAGCgtttcctattgataaaa
aattcttaagattttgggataGAGTATGACCCAAAAATAATCTACTTATA
CCCAATgcttttcataatttttgtgaaaaccaAGGATTGGAagacccacc
atggttggatCTAACCAAAAGAATAATTCAATTTTACCCTCTTTTgattg
gccaaaatttccatTAGTATACTGTAGACTGGGCTAAAAGAGGGGAGACG
GCTAAGCGGAGAGATCAGTAAATTAAAACCGTTTATGGTTTCGTATCATC
GATAAACTTATATTCTTAATTTCAACTATTCATGTCTCTTTCAATATCCG
TCTTCATTGTTTAATTCTGCAGCTTTTATAGCTGTGAACGGAATGTCGTT
AGTTCTAATTCTGGTAACAGATATTGGCCTTGGTCCGTATGTATGTCATT
TGTACGTTTGTTGCCTTGTTAGTTTGCGGCGGTTTAATCGTCGATCGTTA
TATAAGATATAATTTCAGCATGTTTCAGCATTTGCGTAGGTTTAATCGTC
GATCGTTATGAGATATTGGTCTTGGTTGAACCACTTTCTGGGGCGGCCAG
CTGGCTTTAAGCTCCAGCTGACAGTACAATACAAAGTTACAACCGATTAA
AGCAAGAAACTTTCTTGTTAAAAGAGTGAGTGAATCTTTAATCTCCACCC
TTTTTCACAGCCCATTAAGCTCTGCCCCCTGTTCAATATTGCTTCAAACT
ATAACTCTAAGTCGTTATCAGAGGCCCCACCATGggaagaaagtttttga
aaatgatctCTGTATTGCCTCATAGGGGGGGGTTGTAGgtgttcgaaata
ccgttttcccgtcaaaatttttgctgaatcccggaatcccgaaaattgaa
aaaataataacaccgtcacaccggcttgtacagggcaaaaatgggcctaa
ataccgtcaccgtctgattttaaaataccgttttcccgtcaaaatttttg
ctgaatcccggaatcccgaaaattgaaaaaataataacaccgtcacaccg
gcttgtacagggcaaaaatgtgcctaaataccgtcaccgtctgattttaa
aataccgttttcccgtctctttattcgtcaaatcccgtaataccgtacta
aaaaaaggccaatcccgtcacaccgtaaaagtacaaaccccccgcTCATA
GCAGCATGGAGCCCTGGAAAACTTGAGTTTGAAGAATAGAAATCTAGTAT
TTTTagtatttaagtatttttacaCCATTTCCAAGTGTATACTGGAAAAA
GACCcactttttccaaatttccagaATAATCAATAAGTACCAAACTTTTA
TTACagtatattcaagtattttcaagtttttccaTTATCAGTGGTCACCC
TGGATAAGGTAATCACTACGTTCTTTTTACCGTGTTTACCGTactttaat
tttatttcttgGTTTTATATATAGAAAATTCTACTTGAATTCCAAGCTGC
AATCCTATGTTAGACCACGTGACATCAAGCAACGTACATCTCAAAGAAAA
CGCAGGTCAACTACAACAGTAGAAAAAGACTGGAGAGACGAAGGAAAAGT
TACCCCCGTTAAAGATCAAGGCAGCTGTGGAAGCTGTTGGGCGTTTTCTA
CGGtataaaattaatattttagGTTCCAAAGGGTGAAAGAATGCAATTTC
AAAATCGATATCTGTTTTGTTCTCAGGTCATTTTTATGTTTACATGTGAG
AGCAGGTTCAAAGATTCGGGGCGCTAGGGCGAGACAAATTGCACAAGGGG
AACTAGAAAACCTTCATTTTTAGGAAGTTTTTGAAGTTAGTGCTTCTTGG
GCGAAAACCCTGGGGTATATAGGCAAGTGAAGAATATAGGGATGTGCAAT
CGTTTAGTTCGGAAAGTCAGTTCGCAAAACACCATAatattaagcagtta
ttggacaaagtcgaatccaatatgcaaaaatattgggcgtgcgagaaaag
atattggacgaggcttcgccgagttcaatatcttttctcgtagcccaata
tttttgcatattggatgagactgcgtccaaataaatggtttattatccgt
tcatcgctaaaatatttctcgtttccaagcataattccaatttataagaC
CGTTaatctggtttcttggtagctttttattcaaaagtcttatttttatt
ttgtgacgtaacgtcaaaaagaagatgctcaattgtcattgaactcgttg
tgtgaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNtcaatttttgaaatatgtagcctccatg
gaagctatatattcaaaaatattggacagcaaagaagccaatcaaacgtc
gctatttacgcgcgtcggataataatcTTAAATATATTCCATACCAATGT
CCCCATATTTTTACATGGAAAATATATGCCTTAAACTAAAGGAAAtcatt
ttcgcgggaactaattttcacgttttttcgcggtttttcttTTCCAAACC
CGCAAAAATGAGCCCGCTTAAAAATTTACGAGCTCGAAactgcaaaaatt
aattcccgcaaaataCAGTGGTGACCCCCAGAATGCAGGTCTATATCATT
CTCTCAGATAATTGATTACAAGTCGCAAGCAAGTTTTAgaagtcttttga
ttgattgaGTTTTTAAAAAGgctacatttttttgaaaattaaagcaGATT
CGGtcaaattttgtattcttttgCACCTTAATTTTGCAGTTTTGAGGACT
TTGAGAAACgatatttttaggaaatttgaCTATCAGGCGTGATTACAGTT
ACATTGTAGACAAGTCCTTAAAATAGGGTATAGGAAGTTGCGTATTTATA
GAAGGAATTCAGAGAAAATAATTGGAAACAAATTCGTATTGTGGTATTTT
GTCCAAAGCCGACGAATTGACACCAGCATTATGGGGgtcaaaagatttaa
aaaattgacgtAAAATAGTGTAGAGGCCCACCAATTCTTAGATTCCGTGA
CCacaaaatataatttcttttttattttaaagaataaTGTATTTAGTAAC
ATTTTGGGAGAGGAGGAATGTGAAAAAATAATGTACAACAGACTTTACGA
ATATTTAACTAGTAACGACATActatacaaaaaacaattcgGCTTTCAAC
GTAAACATTCTACAGAACATGCTTTACTAGGATTAATCGACGAAATTTCA
GACTCCTTCGAAAGAAATGAATTCACCATTGGTGTTTTCATTGACCTATC
AAAGGCTTTTGACACTGTTGACCATAACATACTGACAGCAAAACTTGAAC
GATACGGAGTGACTGACAAAAACTTAGACTGGNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaaaaaaaaa
aaaaaaaaaaaaaaaaaagttagatgGTGGAAAATGTTTATGTGCCAAAA
AGTGGCGTCATAGGCAAAACTGTAAAGGGCCATTATAAAAAGGTCGATTT
TGCAAAGTCAAAACAAACGGAAACAATTGATACCATCTGATAGAGCtaga
aattctgagcaaaaaaatgtattacaacaagTCCAATACTCAAGCGTATC
AAGAAATACAGCCCTTTTAAACCAAAAAAGGGTGATTtaaccaaatttga
caaaaaatgagaaaatagaAATTGACGGAATCTCAATTGAGACACAAACG
AAAAACTTCTAATATATCTTAATTTAGTGATGCATTAGGCTCAGAATACA
ACAATATTATNTTATTTTATGCAGCAAACGAAAAACTTCTGATATATCTT
AATTAAGTGATGTATTAGGCTCAGAATACAacaatattatcaaaatattt
cgaAGTGTCAagattttgatcaacaaaagGTAACCAAAATAGTCAACaat
tctattttaaaaacctttgaaatTTATCTTTTAGTGGaccttaaaatttt
aagaaaactatcTAAAGTAGATTTTTAGAAATCGACAAAAACATCAACCA
GCATTCTGAGGGGCggtaaaaatgaaattcactttgtgacgtcattttaa
ttCGCAAGAAATGATACTTAAAAGTGTTatttcgagaaaaaaacatttgg
gAAAGAATCTTAAGATGCTTGAATTCGTAGATACTAAACACCGAAACGGG
TGGGAAACTAGTGGAAACGAATGCAAACGGGTGGAAACAAATGGtgaaac
gagtggaaacgagtggtgaaacgggtggaaacgaatgaaaaacaactgga
aACACAGTGGAAACGAGTGCTAGGGGGTAAAGATAATTTGGCATTCGCGT
TCTATTCAGGTTCTAATGGTGATTGGTGTCATATACTTGATGGACCTTTA
CGTTTTGGCGAAAATATATTGTATTAAGAAGTATAAAAATGATGTTTGGA
TAAACAAATTTTCGTTACTTTTTGCTCACNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNtgcaggcatatcataaaatcca
gctaaaaccctgtaaaatcccaaaatcttaaatttagcataacttttgat
ctaggcatccaattgacttcaaattttgacaggctttaggtatcaatgat
aagttttcaaaaattttttaaaaaatttcaaaaactgctgacgtcattat
aaatgacgtcattgttttttgaaataatttactcattttctgcatggatt
ttaagcctcgattttattagtatatttaaaaccggcaaatatgttaaagg
tattctttttggcttttagaaattcaaaacagaattgaaaaatctccatt
ctttcgtttttaattgctattttattgaatagtactttttcattggtcag
cgataattgtgaaactttgtgatgacgtcatcacctttatgatgacgtca
tcaacccaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNacatttctgc
caaatttcaagtccataccttttctagataaaaagttatgcaaggctggt
ggaaaacacccccccttgagaatacaaaatacgaaaaagcctgataataa
tagggttaaagatACAATTTTATATAAAGTGATAACAGCACACTCATggg
attttgaatttattaaaaAGAGTATTGTTGCattaaacagactgtacctt
tataaccataaaggttggcgagtccagtcaaaacacagatttgatctgca
gcgtcacgcttcaccttgccTCAATAGTTAactcaaattgaaacaaacca
ttgccaaacaaactctggtagtttttttattatttcagagaAGTAAATGC
TATGTTATGGCACACAAATTGTTGTGTGTTTTTTCCCAAACGAATTCCAA
TTAGAGAAAATCTTTATTTCGATTGGGATAAAAAATGTGatctaaaatat
attaaaaaacttACCGCTTACAAGACTTCATCTTTCCTGACAAACACCGT
AAACAAGCCAAGATTGGTCGCTCTCGCTGAAAGTAAACAAACACTGTAGT
TAGTGTTATAGTTTGGAATGCAAAAAGCTACTTGTCTTATTAGGAAAAAA
TCTTCCCTTATATTAAAAAGACTTTGCAGTGATCATTCACATCCtaagaa
aatatcaagaatatatGCTTTGCAGCAACAACCATGTTTCTTTGTCATAA
AAAATCCAACCATAAAAAACATACaacatcaaaacacaaaagtatctgaa
atactggatttggtttcaaatgaaaataagcTGCTTTACTTACTACCGAA
AAGAAAATCGCTTCCATTCTGTTATCAAAGCAGCGTTCTGTTTTTAACAA
TGTTTTAAGaggcatttgaaaaaaatttattagttTGATATGAACCCCTA
gcactcgtttccactcgttttcatgtgtttccagttgtttttcattcgtt
tccacccgtttcgccACTTGTTTCCACTCGTTTCACcactcgtttccacc
cgtttgcaTTCGTTTCCACTAGTTTCCCACCCGTTTCGGGGTTTAGTATC
TACGGCTTGAACTGTCTTCAGAACaaacattttaaatttatttgcaAAGC
ACAAAAAATGAGAGCAAATGTAAATTTGACCAGCATTCTGGTGGTCCACC
ACTCTAATTGAAAAAGTGCCATAAGAGAAAATCGATAACAGATTTCAAAG
CAAATAATTTcaggcttttttcttctgaaacaTGATTTTCAGAAGGTAAT
CAAagaataaaaaaggaaaatagaaaataatagGAAAATAGAACGCGGAA
TTTAATTCCCGCTAAAAATTCAGAATCAAGTGAATCACGAAAATTAGGtc
ctggttttttttttttgaaaattagttcccatgaaaattagttcttttaa
aaaGGTAAATTTCTTCTTATAAACAGACTGGGACGATTGTATCTCATTAT
GCTATCAAACACGGTCCATTAATTCCATTAAGTGAACAGCAACTAGTTGA
CTGTTCAACAGAAAATAGTGGATGTAATGGCGGTGTTGTTCAATGGGCAT
ATAATTATGTCAAAGAAAAAACTGATGGACTTGAATCGGGACATCAATAT
CCGTATGAAGCTATTGTAAGTAACTTtcaataccaacttttttttcatta
ctTCACTGCCTTGTTCTGGAAACGTTGCTATGATAATTAGGCAATTGGTT
CTCAAATGAGTTACAGTATAAGAAGTGTGTTCTATTTCCAATCTCTGTGA
ATGACTGACGGAATTACAACAAACTCACGGttttaatataacaatagcgt
tcagtttgaggtcgttgttgttattttctgcccgcgtagtttcattattc
gcccgatagtgtcatttgggcccgacgcgaagcggagggcgcaaatggca
ctagagggctaataatcaaattgCAAGGGTAGAATTAATGACATcaacga
acgaaaacttaacgctattactattattatccatatcagacattcaaaca
acgtttttttctagcgtcaaccAATTCTTTTCGCttaatgcaatgtcttc
aacaaatttttagcaccttgcgagcgggctgcaaatgaccaaaaagtgtt
tttttctgacgttagtttagtctcttcgcttcaatgcaacgacttcaatc
ccattccgagcgggccgcaaatgacgttattgccCTATACCCGGGCCGTT
AATGATATTTTAGCCCTCTGATGCCTGGCGCTTTAGTTTCCTCAGCGTgg
gtatgacaatttgagtcacaaaacctttcaataccaCCCACCGATTGAAC
CTTTAACGgtttacttaatgaccgctatatggataataattatGATTATG
ATATTCTTTTCTAATAccctttttatttttcaggacaATAATTGCAGATA
TGATCATTCCAAAGCTAAAGTCACAATATCAGGTTATAAAGATATTCCCT
TTGCGGATGAAACGGAACAAGTCGCTGCTTTAAATAACCATGGCCCAATT
TCAGTTTGCATTGATGCCGGTCATCTTTCATTCCAACTTTATTCGAGCGG
AGTTTATTATGAACCGAACTGTAATCCCCATTCAATCAATCACGCAGTAA
TTGCTGTCGGCTTTGGTTGGGAAGGTGGTTCTGATTATTGGATTGTCAAA
AATAGGTTAGTTTCGACGATTATATTTGTAAGGCACAACATCAACATTTA
TCCAAtcaaaaagtgctgacgtcgTCCTAGTCTTAGAGACTTACCTTCTG
GattttttccctaaatttttaTGCTTGAAAGGCAAAAGGTTCTGAAATAT
AATGTGGTAGTCCGATTTTTCTTTTGCGCACTCagcatttaaaacaaaat
aatttgcaaCATTTCTCTGCATACCCAAATTCTTTTGTAATTTGTGATGA
GTCAGCtatcattttcagaattttgcaTCGGATACATTTAAGAGACATTG
ATTTTAAATTGAGTTtgcttatcaaaaaaaggtttaaaatttttcccatC
TTTTTTTACAGTTGGGGAACTGGCTGGGGTGACGGTGGATATATGAAAGT
CTCACGAAATCGAAACAACCATTGTGGCATTGCAACACAATCTTGCTATC
CTATCATATAATAAATAATTAAAGAAAGGATAGAAAAGACAAACAATATC
CACATTTCGATATCAATGGAAATGAATGGATATGAATGGAAAAAAACAGT
AACGAAAATAATATTTGTTTCatatttaaatttcatttcgtTTTCAGTCG
GAAAgtataattttttaattgatcAAAAATTTAAGTGTCAaaattacgtt
ttataataatTNTAAAAAAGCAgtaacaaaaataatatttgtttcatatt
taaatttcatttcgtTTTCAGTAGGAAAgtataattttttaattgatcCT
GATCAAGTGTCAaaattacgttttataataattactttttattttcattg
tatttCACAATTAGTATACAGGAATCAGGGTTTAACCCCGGTTTAACCTT
TGAAAATAGTATACGGTTAAAATTTGCAGAGgttccttaaccctattcgt
attaagggGGGGGGGGgctattttttgtactttttgtactttgtattttt
tgacttttcccAACTTTTATATAGCATCAATATGAAACACATTTCAACCC
CTAattattttcacaccttgagcatgatgacatttttgacaaGTAGGTGT
CAATAAAAGATGACACATTTTTTGCATAATTGcaattttaatgtcaaata
cATTTATTTAGGTTTAGGACtataattttgtataaatagGACTCATTTTC
TTGGGATTTTCAGTTAGATTTCGCCTTGTAAATCACAAGGATACTTTATT
TAGCATGGTGA Coding sequence (CDS) from alignment at sc0000222:396419..407679+ >TCONS_00015918 ID=TCONS_00015918|Name=TCONS_00015918|organism=Clytia hemisphaerica|type=CDS|length=5295bp|location=Sequence derived from alignment at sc0000222:396419..407679+ (Clytia hemisphaerica) ATGGAAGCTATCTCTTTCAAATTGGTATGGGTCTCTATTTTGATTGGATG TATAGGTGGGGTTTTCAAagatgctgaatcagcaaatcCACCAGCAGCAG CTTACAATTTAAGAATCCCTGATAAAGCTTGGAAAAATTGGGCTcaaaaa tttgagaagaaatataaagatgaaaaagaggaaaaagaaagatttcaaat ttggaaacAAAATGGAAAATATGTTGTGAATTTCAATCGAAAACAAGATA AAGAGCCTGGGAacaataaaatgaaattgaagatGAACAAATTTGGTGAT TTGACAAATGAAGAATACAGAAAATTCTACTTGAATTCCAAGCTGCAATC CTATGTTAGACCACGTGACATCAAGCAACGTACATCTCAAAGAAAACGCA GGTCAACTACAACAGTAGAAAAAGACTGGAGAGACGAAGGAAAAGTTACC CCCGTTAAAGATCAAGGCAGCTGTGGAAGCTGTTGGGCGTTTTCTACGAC TGGGACGATTGTATCTCATTATGCTATCAAACACGGTCCATTAATTCCAT TAAGTGAACAGCAACTAGTTGACTGTTCAACAGAAAATAGTGGATGTAAT GGCGGTGTTGTTCAATGGGCATATAATTATGTCAAAGAAAAAACTGATGG ACTTGAATCGGGACATCAATATCCGTATGAAGCTATTgacaATAATTGCA GATATGATCATTCCAAAGCTAAAGTCACAATATCAGGTTATAAAGATATT CCCTTTGCGGATGAAACGGAACAAGTCGCTGCTTTAAATAACCATGGCCC AATTTCAGTTTGCATTGATGCCGGTCATCTTTCATTCCAACTTTATTCGA GCGGAGTTTATTATGAACCGAACTGTAATCCCCATTCAATCAATCACGCA GTAATTGCTGTCGGCTTTGGTTGGGAAGGTGGTTCTGATTATTGGATTGT CAAAAATAGTTGGGGAACTGGCTGGGGTGACGGTGGATATATGAAAGTCT CACGAAATCGAAACAACCATTGTGGCATTGCAACACAATCTTGCTATCCT ATCATATAAATGGAAGCTATCTCTTTCAAATTGGTATGGGTCTCTATTTT GATTGGATGTATAGGTGGGGTTTTCAAagatgctgaatcagcaaatcCAC CAGCAGCAGCTTACAATTTAAGAATCCCTGATAAAGCTTGGAAAAATTGG GCTcaaaaatttgagaagaaatataaagatgaaaaagaggaaaaagaaag atttcaaatttggaaacAAAATGGAAAATATGTTGTGAATTTCAATCGAA AACAAGATAAAGAGCCTGGGAacaataaaatgaaattgaagatGAACAAA TTTGGTGATTTGACAAATGAAGAATACAGAAAATTCTACTTGAATTCCAA GCTGCAATCCTATGTTAGACCACGTGACATCAAGCAACGTACATCTCAAA GAAAACGCAGGTCAACTACAACAGTAGAAAAAGACTGGAGAGACGAAGGA AAAGTTACCCCCGTTAAAGATCAAGGCAGCTGTGGAAGCTGTTGGGCGTT TTCTACGACTGGGACGATTGTATCTCATTATGCTATCAAACACGGTCCAT TAATTCCATTAAGTGAACAGCAACTAGTTGACTGTTCAACAGAAAATAGT GGATGTAATGGCGGTGTTGTTCAATGGGCATATAATTATGTCAAAGAAAA AACTGATGGACTTGAATCGGGACATCAATATCCGTATGAAGCTATTgaca ATAATTGCAGATATGATCATTCCAAAGCTAAAGTCACAATATCAGGTTAT AAAGATATTCCCTTTGCGGATGAAACGGAACAAGTCGCTGCTTTAAATAA CCATGGCCCAATTTCAGTTTGCATTGATGCCGGTCATCTTTCATTCCAAC TTTATTCGAGCGGAGTTTATTATGAACCGAACTGTAATCCCCATTCAATC AATCACGCAGTAATTGCTGTCGGCTTTGGTTGGGAAGGTGGTTCTGATTA TTGGATTGTCAAAAATAGTTGGGGAACTGGCTGGGGTGACGGTGGATATA TGAAAGTCTCACGAAATCGAAACAACCATTGTGGCATTGCAACACAATCT TGCTATCCTATCATATAAATGGAAGCTATCTCTTTCAAATTGGTATGGGT CTCTATTTTGATTGGATGTATAGGTGGGGTTTTCAAagatgctgaatcag caaatcCACCAGCAGCAGCTTACAATTTAAGAATCCCTGATAAAGCTTGG AAAAATTGGGCTcaaaaatttgagaagaaatataaagatgaaaaagagga aaaagaaagatttcaaatttggaaacAAAATGGAAAATATGTTGTGAATT TCAATCGAAAACAAGATAAAGAGCCTGGGAacaataaaatgaaattgaag atGAACAAATTTGGTGATTTGACAAATGAAGAATACAGAAAATTCTACTT GAATTCCAAGCTGCAATCCTATGTTAGACCACGTGACATCAAGCAACGTA CATCTCAAAGAAAACGCAGGTCAACTACAACAGTAGAAAAAGACTGGAGA GACGAAGGAAAAGTTACCCCCGTTAAAGATCAAGGCAGCTGTGGAAGCTG TTGGGCGTTTTCTACGACTGGGACGATTGTATCTCATTATGCTATCAAAC ACGGTCCATTAATTCCATTAAGTGAACAGCAACTAGTTGACTGTTCAACA GAAAATAGTGGATGTAATGGCGGTGTTGTTCAATGGGCATATAATTATGT CAAAGAAAAAACTGATGGACTTGAATCGGGACATCAATATCCGTATGAAG CTATTgacaATAATTGCAGATATGATCATTCCAAAGCTAAAGTCACAATA TCAGGTTATAAAGATATTCCCTTTGCGGATGAAACGGAACAAGTCGCTGC TTTAAATAACCATGGCCCAATTTCAGTTTGCATTGATGCCGGTCATCTTT CATTCCAACTTTATTCGAGCGGAGTTTATTATGAACCGAACTGTAATCCC CATTCAATCAATCACGCAGTAATTGCTGTCGGCTTTGGTTGGGAAGGTGG TTCTGATTATTGGATTGTCAAAAATAGTTGGGGAACTGGCTGGGGTGACG GTGGATATATGAAAGTCTCACGAAATCGAAACAACCATTGTGGCATTGCA ACACAATCTTGCTATCCTATCATATAAATGGAAGCTATCTCTTTCAAATT GGTATGGGTCTCTATTTTGATTGGATGTATAGGTGGGGTTTTCAAagatg ctgaatcagcaaatcCACCAGCAGCAGCTTACAATTTAAGAATCCCTGAT AAAGCTTGGAAAAATTGGGCTcaaaaatttgagaagaaatataaagatga aaaagaggaaaaagaaagatttcaaatttggaaacAAAATGGAAAATATG TTGTGAATTTCAATCGAAAACAAGATAAAGAGCCTGGGAacaataaaatg aaattgaagatGAACAAATTTGGTGATTTGACAAATGAAGAATACAGAAA ATTCTACTTGAATTCCAAGCTGCAATCCTATGTTAGACCACGTGACATCA AGCAACGTACATCTCAAAGAAAACGCAGGTCAACTACAACAGTAGAAAAA GACTGGAGAGACGAAGGAAAAGTTACCCCCGTTAAAGATCAAGGCAGCTG TGGAAGCTGTTGGGCGTTTTCTACGACTGGGACGATTGTATCTCATTATG CTATCAAACACGGTCCATTAATTCCATTAAGTGAACAGCAACTAGTTGAC TGTTCAACAGAAAATAGTGGATGTAATGGCGGTGTTGTTCAATGGGCATA TAATTATGTCAAAGAAAAAACTGATGGACTTGAATCGGGACATCAATATC CGTATGAAGCTATTgacaATAATTGCAGATATGATCATTCCAAAGCTAAA GTCACAATATCAGGTTATAAAGATATTCCCTTTGCGGATGAAACGGAACA AGTCGCTGCTTTAAATAACCATGGCCCAATTTCAGTTTGCATTGATGCCG GTCATCTTTCATTCCAACTTTATTCGAGCGGAGTTTATTATGAACCGAAC TGTAATCCCCATTCAATCAATCACGCAGTAATTGCTGTCGGCTTTGGTTG GGAAGGTGGTTCTGATTATTGGATTGTCAAAAATAGTTGGGGAACTGGCT GGGGTGACGGTGGATATATGAAAGTCTCACGAAATCGAAACAACCATTGT GGCATTGCAACACAATCTTGCTATCCTATCATATAAATGGAAGCTATCTC TTTCAAATTGGTATGGGTCTCTATTTTGATTGGATGTATAGGTGGGGTTT TCAAagatgctgaatcagcaaatcCACCAGCAGCAGCTTACAATTTAAGA ATCCCTGATAAAGCTTGGAAAAATTGGGCTcaaaaatttgagaagaaata taaagatgaaaaagaggaaaaagaaagatttcaaatttggaaacAAAATG GAAAATATGTTGTGAATTTCAATCGAAAACAAGATAAAGAGCCTGGGAac aataaaatgaaattgaagatGAACAAATTTGGTGATTTGACAAATGAAGA ATACAGAAAATTCTACTTGAATTCCAAGCTGCAATCCTATGTTAGACCAC GTGACATCAAGCAACGTACATCTCAAAGAAAACGCAGGTCAACTACAACA GTAGAAAAAGACTGGAGAGACGAAGGAAAAGTTACCCCCGTTAAAGATCA AGGCAGCTGTGGAAGCTGTTGGGCGTTTTCTACGACTGGGACGATTGTAT CTCATTATGCTATCAAACACGGTCCATTAATTCCATTAAGTGAACAGCAA CTAGTTGACTGTTCAACAGAAAATAGTGGATGTAATGGCGGTGTTGTTCA ATGGGCATATAATTATGTCAAAGAAAAAACTGATGGACTTGAATCGGGAC ATCAATATCCGTATGAAGCTATTgacaATAATTGCAGATATGATCATTCC AAAGCTAAAGTCACAATATCAGGTTATAAAGATATTCCCTTTGCGGATGA AACGGAACAAGTCGCTGCTTTAAATAACCATGGCCCAATTTCAGTTTGCA TTGATGCCGGTCATCTTTCATTCCAACTTTATTCGAGCGGAGTTTATTAT GAACCGAACTGTAATCCCCATTCAATCAATCACGCAGTAATTGCTGTCGG CTTTGGTTGGGAAGGTGGTTCTGATTATTGGATTGTCAAAAATAGTTGGG GAACTGGCTGGGGTGACGGTGGATATATGAAAGTCTCACGAAATCGAAAC AACCATTGTGGCATTGCAACACAATCTTGCTATCCTATCATATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00015918-exon-sc0000222-1491911889:396419..397033 | TCONS_00015918-exon-sc0000222-1491911889:396419..397033 | Clytia hemisphaerica | exon |
TCONS_00015918-exon-sc0000222-1510915933:396419..397033 | TCONS_00015918-exon-sc0000222-1510915933:396419..397033 | Clytia hemisphaerica | exon |
TCONS_00015918-exon-sc0000222-1575043694:396419..397033 | TCONS_00015918-exon-sc0000222-1575043694:396419..397033 | Clytia hemisphaerica | exon |
TCONS_00015918-exon-sc0000222-1491911889:398693..398870 | TCONS_00015918-exon-sc0000222-1491911889:398693..398870 | Clytia hemisphaerica | exon |
TCONS_00015918-exon-sc0000222-1510915933:398693..398870 | TCONS_00015918-exon-sc0000222-1510915933:398693..398870 | Clytia hemisphaerica | exon |
TCONS_00015918-exon-sc0000222-1575043694:398693..398870 | TCONS_00015918-exon-sc0000222-1575043694:398693..398870 | Clytia hemisphaerica | exon |
TCONS_00015918-exon-sc0000222-1491911889:405245..405433 | TCONS_00015918-exon-sc0000222-1491911889:405245..405433 | Clytia hemisphaerica | exon |
TCONS_00015918-exon-sc0000222-1510915933:405245..405433 | TCONS_00015918-exon-sc0000222-1510915933:405245..405433 | Clytia hemisphaerica | exon |
TCONS_00015918-exon-sc0000222-1575043694:405245..405433 | TCONS_00015918-exon-sc0000222-1575043694:405245..405433 | Clytia hemisphaerica | exon |
TCONS_00015918-exon-sc0000222-1491911889:406202..406473 | TCONS_00015918-exon-sc0000222-1491911889:406202..406473 | Clytia hemisphaerica | exon |
TCONS_00015918-exon-sc0000222-1510915933:406202..406473 | TCONS_00015918-exon-sc0000222-1510915933:406202..406473 | Clytia hemisphaerica | exon |
TCONS_00015918-exon-sc0000222-1575043694:406202..406473 | TCONS_00015918-exon-sc0000222-1575043694:406202..406473 | Clytia hemisphaerica | exon |
TCONS_00015918-exon-sc0000222-1491911889:406830..407679 | TCONS_00015918-exon-sc0000222-1491911889:406830..407679 | Clytia hemisphaerica | exon |
TCONS_00015918-exon-sc0000222-1510915933:406830..407679 | TCONS_00015918-exon-sc0000222-1510915933:406830..407679 | Clytia hemisphaerica | exon |
TCONS_00015918-exon-sc0000222-1575043694:406830..407679 | TCONS_00015918-exon-sc0000222-1575043694:406830..407679 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000222 | supercontig | sc0000222:396419..407679 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
Term | Definition |
GO:0006508 | proteolysis |
Vocabulary: Molecular Function
Term | Definition |
GO:0008234 | cysteine-type peptidase activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
biological_process |
GO:0006508 |
proteolysis |
molecular_function |
GO:0008234 |
cysteine-type peptidase activity |
Blast
BLAST of TCONS_00015918 vs. Swiss-Prot (Human)
Match: CATL1 (Cathepsin L1 OS=Homo sapiens GN=CTSL PE=1 SV=2) HSP 1 Score: 238.81 bits (608), Expect = 1.772e-71 Identity = 127/293 (43.34%), Postives = 182/293 (62.12%), Query Frame = 2
Query: 485 RFQIWKQNGKYVVNFNRKQDKEPGNNKMKLKMNKFGDLTNEEYRKFYLNSKLQSYVRPRDIXXXXXXXXXXXXXXVEKDWRDEGKVTPVKDQGSCGSCWAFSTTGTIVSHYAIKHGPLIPLSEQQLVDCSTE--NSGCNGGVVQWAYNYVKEKTDGLESGHQYPYEAIDNNCRYDHSKAKVTISGYKDIPFADETEQVAALNNHGPISVCIDAGHLSFQLYSSGVYYEPNCNPHSINHAVIAVGFGWEG----GSDYWIVKNSWGTGWGDGGYMKVSRNRNNHCGIATQSCYP 1345
R +W++N K + N Q+ G + + MN FGD+T+EE+R+ + + Q+ +PR K + +V DWR++G VTPVK+QG CGSCWAFS TG + K G LI LSEQ LVDCS N GCNGG++ +A+ YV++ GL+S YPYEA + +C+Y+ + +G+ DIP E + A+ GPISV IDAGH SF Y G+Y+EP+C+ ++H V+ VG+G+E + YW+VKNSWG WG GGY+K++++R NHCGIA+ + YP
Sbjct: 48 RRAVWEKNMKMIELHN--QEYREGKHSFTMAMNAFGDMTSEEFRQ--VMNGFQNR-KPRKGKVFQEPLFYEAPRSV--DWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQD-NGGLDSEESYPYEATEESCKYNPKYSVANDTGFVDIP-KQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYP 331
The following BLAST results are available for this feature:
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