TCONS_00015807 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015807
Unique NameTCONS_00015807
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1882

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015807 ID=TCONS_00015807|Name=TCONS_00015807|organism=Clytia hemisphaerica|type=transcript|length=1882bp
AAACAAAAGATCTTTAATTTGTTTCGTCTATTGTGCAACAAGATCTTTTT
ATCCGGTTTTTAAGCAGAACTAGACTTTTGCAAattatttgatttgtttt
ctggTGGTGCTGTTTTTACAACTTGGTATTTTATTCCAATTGATTCAATG
AATTTTATCCTAAATttcgaatatttcaaattccattATCAATCAAACTA
AAAGATGATGCTTCAGTAAAATTCAttccttaaaaaataattcaaaaggA
AAATCAAACATTGTTTCACAGATATGGGAAATACTATTACCAACTTTTTC
AAGAACCTTTTCGGTAAAATGGATTGTCGAATCCTAATGGTTGGTCTGGA
TGCAGCTGGAAAAACTACCATTTTGTATTATTTCAAGCTTGGAGGTGAAC
TCGTGCACACACTTCCAACGATCGGGTTTAACGTTGAAACTGTACATTAT
AAGAATTTGGAATTCACAGTATGGGATATTGGCGGACAAGATCGAATAAG
GGCGTTATGGCGTTTGTATTACCAAGAAACTGAGGgaattatttttgttg
ttgattCTCATGATAGAGAACGTATTCGAGAAGCACGTTTTGAGCTCTTT
AAGCTTCTCAAAGAAGACGATTTACAGGAAGCTGTACTTTTGGTTTATGC
TAATAAGCAAGATTTACCTGGGGCTATGTCGACAACTGAGATTACTGACA
AACTTGGACTCCTTAGCCTGCGAAATCGTAATTGGTATATCCAGGCTACA
TCTGCTGTGAAAGGGGATGGTCTGTATGCTGGTATGGAATGGATGAGTCG
TGAGGTTCGAAATCAGAAACGGAAGAAATCAagtagaaaatgaagaagat
cgACGTGTTCttcttttactttgaaaaaatatttttctaaatgaaggtta
ttttcattttcaaattttcaaatttatattttttgtcacGTATCGTACTG
CGCACCATAGTGTATCTCACATAGTGTTGTCCGATgaaattttagcaatt
tctgTAGATTTTGGGACTGTCTACAGgcatagtgtggtcgtgttacaaaa
atacaggctgtttgtaggaaaaaaataagatctcgctgaaactttctcaa
gaccttctctataggatacttattatacctcaggaaaaaatcccctaaaa
tcccactggtggtaCATCCCTTTTTTGagcaatttctattttccccaggc
aaaatcctaagggcgaaatttttagaaaatttcaaactcatttttagACT
TTATCAaatataccattcgaaagctctcgaaaaactatatagaagacttt
taaacggttatagccgatttccttacctaactcgagatgtttcatgcgca
agtttcacttttcgccacattttggtctaaaattgatcatatatagcatc
ttctgcgtgaattatcttgagttaggtaatgaaatcggttatacccgttt
aaaagtcttcttttcaaaaaattttgccttctatttttttctcaatctca
aaatattaaatcgagattatctttccaacgggaTAATTAGAGTAAAGTAA
AGTAaaggattttaatttttacaattCAAAGATTTTATATCTTTTGGATA
TTATGACTTGTACATAGGTTATagaactaaaaaaaacaaacacacaCAAA
AATtattatacaaaaaatcaataaattaaaaaatcattcaaaatcataaa
aaatattgtctttttaaatattctttaaaaaatctaatctGGAAAAATTA
CCTAAAGATGACATCAATACTGGTAAAATGAAGCATTGTTGCGTCCTTGC
TTTAGATTAGTCTTTCATATTTAACAAATTTGTGCATTTTCACACCAAAC
CACGCGTGCAAAGTGCAATGTTTTCATTGAAT
Run BLAST on NCBI

protein sequence of TCONS_00015807-protein

>TCONS_00015807-protein ID=TCONS_00015807-protein|Name=TCONS_00015807-protein|organism=Clytia hemisphaerica|type=polypeptide|length=189bp
MGNTITNFFKNLFGKMDCRILMVGLDAAGKTTILYYFKLGGELVHTLPTI
GFNVETVHYKNLEFTVWDIGGQDRIRALWRLYYQETEGIIFVVDSHDRER
IREARFELFKLLKEDDLQEAVLLVYANKQDLPGAMSTTEITDKLGLLSLR
NRNWYIQATSAVKGDGLYAGMEWMSREVRNQKRKKSSRK
Run BLAST on NCBI

transcript from alignment at sc0000217:216138..218073+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015807 ID=TCONS_00015807|Name=TCONS_00015807|organism=Clytia hemisphaerica|type=transcript|length=1936bp|location=Sequence derived from alignment at sc0000217:216138..218073+ (Clytia hemisphaerica)
AAACAAAAGATCTTTAATTTGTTTCGTCTATTGTGCAACAAGATCTTTTT
ATCCGGTTTTTAAGCAGAACTAGACTTTTGCAAattatttgatttgtttt
ctggTGGTGCTGTTTTTACAACTTGGTATTTTATTCCAATTGATTCAATG
AATTTTATCCTAAATttcgaatatttcaaattccattATCAATCAAACTA
AAAGATGATGCTTCAGTAAAATTCAttccttaaaaaataattcaaaaggA
AAATCAAACATTGTTTCACAGATATGGGAAATACTATTACCAACTTTTTC
AAGAACCTTTTCGGTAAAATGGATTGTCGAATCCTAATGGTTGGTCTGGA
TGCAGCTGGAAAAACTACCATTTTGTATTATTTCAAGCTTGGAGGTGAAC
TCGTGCACACACTTCCAACGATCGGGTTTAACGTTGAAACTGTACATTAT
AAGAATTTGGAATTCACAGTATGGGATATTGGCGGACAAGATCGAATAAG
GGCGTTATGGCGTTTGTATTACCAAGAAACTGAGGgaattatttttgttg
ttgattCTCATGATAGAGAACGTATTCGAGAAGCACGTTTTGAGCTCTTT
AAGCTTCTCAAAGAAGACGATTTACAGGAAGCTGTACTTTTGGTTTATGC
TAATAAGCAAGATTTACCTGGGGCTATGTCGACAACTGAGATTACTGACA
AACTTGGACTCCTTAGCCTGCGAAATCGTAATTGGTATATCCAGGCTACA
TCTGCTGTGAAAGGGGATGGTCTGTATGCTGGTATGGAATGGATGAGTCG
TGAGGTTCGAAATCAGAAACGGAAGAAATCAagtagaaaatgaagaagat
cgACGTGTTCttcttttactttgaaaaaatatttttctaaatgaaggtta
ttttcattttcaaattttcaaatttatattttttgtcacGTATCGTACTG
CGCACCATAGTGTATCTCACATAGTGTTGTCCGATgaaattttagcaatt
tctgTAGATTTTGGGACTGTCTACAGgcatagtgtggtcgtgttacaaaa
atacaggctgtttgtaggaaaaaaataagatctcgctgaaactttctcaa
gaccttctctataggatacttattatacctcaggaaaaaatcccctaaaa
tcccactggtggtaCATCCCTTTTTTGagcaatttctattttccccaggc
aaaatcctaagggcgaaatttttagaaaatttcaaactcatttttagACT
TTATCAaatataccattcgaaagctctcgaaaaactatatagaagacttt
taaacggttatagccgatttccttacctaactcgagatgtttcatgcgca
agtttcacttttcgccacattttggtctaaaattgatcatatatagcatc
ttctgcgtgaattatcttgagttaggtaatgaaatcggttatacccgttt
aaaagtcttcttttcaaaaaattttgccttctatttttttctcaatctca
aaatattaaatcgagattatctttccaacgggaTAATTAGAGTAAAGTAA
AGTAaaggattttaatttttacaattCAAAGATTTTATATCTTTTGGATA
TTATGACTTGTACATAGGTTATagaactaaaaaaaacaaacacacaCAAA
AATtattatacaaaaaatcaataaattaaaaaatcattcaaaatcataaa
aaatattgtctttttaaatattctttaaaaaatctaatctGGAAAAATTA
CCTAAAGATGACATCAATACTGGTNtctttaaaaaatcttatctcGAAAA
ATTACCTAAAGATGACATCAATACTGGTAAAATGAAGCATTGTTGCGTCC
TTGCTTTAGATTAGTCTTTCATATTTAACAAATTTGTGCATTTTCACACC
AAACCACGCGTGCAAAGTGCAATGTTTTCATTGAAT

Coding sequence (CDS) from alignment at sc0000217:216138..218073+

>TCONS_00015807 ID=TCONS_00015807|Name=TCONS_00015807|organism=Clytia hemisphaerica|type=CDS|length=570bp|location=Sequence derived from alignment at sc0000217:216138..218073+ (Clytia hemisphaerica)
ATGGGAAATACTATTACCAACTTTTTCAAGAACCTTTTCGGTAAAATGGA
TTGTCGAATCCTAATGGTTGGTCTGGATGCAGCTGGAAAAACTACCATTT
TGTATTATTTCAAGCTTGGAGGTGAACTCGTGCACACACTTCCAACGATC
GGGTTTAACGTTGAAACTGTACATTATAAGAATTTGGAATTCACAGTATG
GGATATTGGCGGACAAGATCGAATAAGGGCGTTATGGCGTTTGTATTACC
AAGAAACTGAGGgaattatttttgttgttgattCTCATGATAGAGAACGT
ATTCGAGAAGCACGTTTTGAGCTCTTTAAGCTTCTCAAAGAAGACGATTT
ACAGGAAGCTGTACTTTTGGTTTATGCTAATAAGCAAGATTTACCTGGGG
CTATGTCGACAACTGAGATTACTGACAAACTTGGACTCCTTAGCCTGCGA
AATCGTAATTGGTATATCCAGGCTACATCTGCTGTGAAAGGGGATGGTCT
GTATGCTGGTATGGAATGGATGAGTCGTGAGGTTCGAAATCAGAAACGGA
AGAAATCAagtagaaaatga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008842XLOC_008842Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015807-proteinTCONS_00015807-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015807-exon-sc0000217-1491911889:216138..217899TCONS_00015807-exon-sc0000217-1491911889:216138..217899Clytia hemisphaericaexon
TCONS_00015807-exon-sc0000217-1510915933:216138..217899TCONS_00015807-exon-sc0000217-1510915933:216138..217899Clytia hemisphaericaexon
TCONS_00015807-exon-sc0000217-1575043694:216138..217899TCONS_00015807-exon-sc0000217-1575043694:216138..217899Clytia hemisphaericaexon
TCONS_00015807-exon-sc0000217-1491911889:217954..218073TCONS_00015807-exon-sc0000217-1491911889:217954..218073Clytia hemisphaericaexon
TCONS_00015807-exon-sc0000217-1510915933:217954..218073TCONS_00015807-exon-sc0000217-1510915933:217954..218073Clytia hemisphaericaexon
TCONS_00015807-exon-sc0000217-1575043694:217954..218073TCONS_00015807-exon-sc0000217-1575043694:217954..218073Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000217supercontigsc0000217:216138..218073 +
Expression
No biomaterial libraries express this feature.
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR006689Small_GTPase_ARF/SAR
IPR005225Small_GTP-bd_dom
IPR024156Small_GTPase_ARF
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
Vocabulary: Biological Process
TermDefinition
GO:0007264small GTPase mediated signal transduction
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007264 small GTPase mediated signal transduction
cellular_component GO:0005622 intracellular
molecular_function GO:0005525 GTP binding
Blast
[Close]
BLAST of TCONS_00015807 vs. Swiss-Prot (Human)
Match: ARF1 (ADP-ribosylation factor 1 OS=Homo sapiens GN=ARF1 PE=1 SV=2)

HSP 1 Score: 270.781 bits (691), Expect = 2.622e-86
Identity = 128/181 (70.72%), Postives = 152/181 (83.98%), Query Frame = 1 
Query:  274 MGNTITNFFKNLFGKMDCRILMVGLDAAGKTTILYYFKLGGELVHTLPTIGFNVETVHYKNLEFTVWDIGGQDRIRALWRLYYQETEGIIFVVDSHDRERIREARFELFKLLKEDDLQEAVLLVYANKQDLPGAMSTTEITDKLGLLSLRNRNWYIQATSAVKGDGLYAGMEWMSREVRNQ 816
            MGN   N FK LFGK + RILMVGLDAAGKTTILY  KLG E+V T+PTIGFNVETV YKN+ FTVWD+GGQD+IR LWR Y+Q T+G+IFVVDS+DRER+ EAR EL ++L ED+L++AVLLV+ANKQDLP AM+  EITDKLGL SLR+RNWYIQAT A  GDGLY G++W+S ++RNQ
Sbjct:    1 MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLG-EIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 180
The following BLAST results are available for this feature:
BLAST of TCONS_00015807 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ARF12.622e-8670.72ADP-ribosylation factor 1 OS=Homo sapiens GN=ARF1 ... [more]
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