TCONS_00015804 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015804
Unique NameTCONS_00015804
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1116

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015804 ID=TCONS_00015804|Name=TCONS_00015804|organism=Clytia hemisphaerica|type=transcript|length=1116bp
CGACCATTTATTTTTCGCGCGAAAAAAGAGAGAGCATAGCAAACAAAGGG
TGCCGCCCATTTCAAAAATTACCGAAAAAAACGTGGGTTCTTTTGAAAAC
TTATATGCCTTTGttacttttgaacaaaaatcttatgaaattataaagat
tttcaaattaaattccaaaAAGTGTTGTTATTCTTGTCATGAAAATTTGC
CAAGAAGTCTGGGGTTAAGAATGGGCGGTTATCGGGTGTTGGctatcact
ttcgttttcattttcacGATGCTAATTCTTCGAATCGTTCCTTCCATCCA
GAGACTTTTGCCAACCGCTTTCAAGAATCTTTCAGTGTCAGCATTCACTG
GTACAAGAGCTATGTCAGCTAAATCTCAAGCAGACTTGGTAGCTGAGGCG
AAAGCAAAATATGGAGATTTGGTTGCTGAGaatattttcactaaaatctt
GAACAAAGAGATTCCTGCCAAGCTGATTTACGAAGATGACAAATGTGTTG
CATTCAATGATGTCAACCCGCAAGCACCAACGCATTTCCTTGTTATTCCA
CGTTTCCCAATACCAAGACTTCAAGATGTTAAAGAAGATGACAAAGCTTT
GTtaggtCACTTGATGTTCGTTGCTAACAAAGTAGCTGGGGAGCAAGGCT
TACACGAGAAAGGATATCGTATGGTAGTCAACAATGGAGAGCAAGGCTGC
CAGTCTGTGATCCACATCCATCTTCACGTTATCGGTGGACGCCAACTCAC
CTGGCCACCAGGCTAACAATAAGCACTTATTTATATGgtataaatatttc
attttttttgtaatacaaccttacatttttataaattcaGAAATATTGCA
GATTCTCTTCTAGCAATTATTGTTTGCTTTTGATTCATTCTGTCGAATAT
TTGgttctttaaatgttcttatgtcttgcttttaagattttaaattgTCT
AAAATTTGAATCCTTTTCAACTCAAGTACCTGATTAAAAACACTTCACCT
TGACCTAAAACCcttttttaaagggacataaaagtagtaaaatgtaaaca
ttgcgcgaaccacgtgtcattacagagaacaattaaaatcacgtgtccaa
aacaaacttgtaaaac
Run BLAST on NCBI

protein sequence of TCONS_00015804-protein

>TCONS_00015804-protein ID=TCONS_00015804-protein|Name=TCONS_00015804-protein|organism=Clytia hemisphaerica|type=polypeptide|length=254bp
DHLFFARKKREHSKQRVPPISKITEKNVGSFENLYAFVTFEQKSYEIIKI
FKLNSKKCCYSCHENLPRSLGLRMGGYRVLAITFVFIFTMLILRIVPSIQ
RLLPTAFKNLSVSAFTGTRAMSAKSQADLVAEAKAKYGDLVAENIFTKIL
NKEIPAKLIYEDDKCVAFNDVNPQAPTHFLVIPRFPIPRLQDVKEDDKAL
LGHLMFVANKVAGEQGLHEKGYRMVVNNGEQGCQSVIHIHLHVIGGRQLT
WPPG
Run BLAST on NCBI

transcript from alignment at sc0000217:132257..144790+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015804 ID=TCONS_00015804|Name=TCONS_00015804|organism=Clytia hemisphaerica|type=transcript|length=12534bp|location=Sequence derived from alignment at sc0000217:132257..144790+ (Clytia hemisphaerica)
CGACCATTTATTTTTCGCGCGAAAAAAGAGAGAGCATAGCAAACAAAGGG
TGCCGCCCATTTCAAAAATTACCGAAAAAAACGTGGGTTCTTTTGAAAAC
TTATATGCCTTTGttacttttgaacaaaaatcttatgaaattataaagat
tttcaaattaaattccaaaAAGTGTTGTTATTCTTGTCATGAAAATTTGC
CAAGAAGTCTGGGGTTAAGAATGGGCGGTTATCGGGTGTTGGctatcact
ttcgttttcattttcacGATGCTAATTCTTCGAATCGTTCCTTCCATCCA
GAGACTTTTGCCAACCGCTTTCAAGAATCTTTCAGTGTCAGCATTCACTG
GTACAAGAGCTATGTCAGCTGTAAGTATATTTTCCATTCTCTTTCTACAT
CACAGGCAGACTTTTGATAGCTTCTTCTTTCCTCTCTGGGAATAAAATTG
GTGagaaaatcaacataaaaaggggttgcggaacgagcgttctgttttcg
caaagcgaagaaatttcaaaatgtataagAAATCGACGACTCCATTATCA
ATACAGAATNGTTCTCATTCggaaacaaaatggcggcgagaaaagcacgt
cttttgctttggacgaaaggttgtaaattctggttgattttaaggtttta
tcttatcttatctcatttactttaatttgtagaggcttcttcaatgttta
gggaaggtaagtctgtaaaagttatttgtttttcggcggaaaaaagtgtt
taaaaaagcattttttgtgctcaaggtttatttttcttcgcaaatttttg
tcttcaatcttaaatagatgaacgtNgtcgtggcttcttcgtaaagacga
aagacagatctggatttatttcgtactttccagtctcttgttcgtagttt
ttctgactttctggttctttgtgagttatttacttttactatgttttcta
acttactgagtaacttaccgacagatcgccacgggtgggattcgaaccca
ctaaatgcaaagttccgatgttttgaaacccaatgccttatccactgcgc
cacggattcatgccgatAGAGCGTTTCTGACGNTGTATTTGGCTGatgct
tatgattttttcatagaacatagtaaaactattcaggaacttagaccttt
ttacagaatttcaaaaaatctgttagttctggagatatattgaaaagttt
agacatgggtagtttgcgttcgtgtttcgcgttcccaaaccaaacgcacg
tgccctaactgataataaccaaattcctagccaatctgatacgtaaccac
acccaaaccacacccattcccaaccctaccaggtcgcctgcaggtcctga
cactNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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GACagataaaaaagtcatttgtactcgattttgtaatacttttgtagtag
tttcaaaaaatcttcctggaaaaagtataaagataTCTGCTCAAGACAAC
TGTTCACaaggtaaaataaaaaaactaaaaaaactaaaactgtAAAGAGT
AACATCGTATAGACTTAATAACATAGGGGGATTACAGTGGTATTTAAAAG
GGTAACACAGTATTTCATACAGagcttttaaactgaaaataatttgatga
gttttaaaagatccttctagaatttttcaacaaacgtatcctgtgaaaaa
agccatttcaatcatgaagtcattaaaacaataacacattgaTGTGTAGT
TTTAGTATTAATGTAGTCTTTTtcgtcattgttttgattctgtagtttta
aaatattacagtaaatgtaACATTGTATTATGGACTTTTTGATAGTTTAG
GATGTCATAACTAAAAGTGGTAaagaataaaatctatttttacaaaaata
tcactaatttataattcactactagttttcatacattcatgcaatcaaaa
aagcaaatcatACAATAACTTCAAACCCCTTGAAACATTCCAATATTATA
AGGCAGCGATCACGAACCTCTCCATGCATTTTATTTTGCCAGTAACATGT
TCaagaattttgagaaaatgctgtgaaagagcataattggaaattattta
aagtgtttgaattgaataatgaccaccagcagcagtgaattcgaaatttt
ctactactgacttaaaaagattaaaaataagaTGGAAGTGTATTTTCTGA
TTGCTGCCTTAACATGTAAAAGTTAATGTCATTAAGCATCACATGTCACA
CACAAAACATCCCATCAGCCCATNGAATTATAAAGtttaaatgttaaaat
atttcgaaatccaaatgttgcttttaagtctgacttgactgttgcagata
tttggtttgatctcaagccataaaaatagttttcgatgagatcaattgat
gtaataggaatggttactccaatcaattgTNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCGCGTTTGAGCGCGCTGCGC
GCTCAAACGCACGTTCCGCAAATAACTTGGAAAAACTTTTGTGAAAGTTT
GCTACCGTCGGCgttgtgaagtcgggtaacttgcatcagtgaagagaaac
ttgcatagccatcaaatgactgacaaattaaagcagcaaaatttcaaaat
aaatgaacTACACAGCTTTGCTTGCAGCTCTAgtttaccatttttgtttt
gatttaaattgatttaactttgtattttaatgaccctTTGCCTTTAATGA
CCAAACTGATTGATGCAATTTATTtattacccgatctcacggtacagTTT
ATAGTAGTGGTTGTATGTTTGAAAAGTGAACCCTGTCAGataccgtagga
tcgtctaatgtcgacatgcgtcttctaatttcgaaatagctgtaggctgg
tcttcaaaactaaaaatcaaacataaacaaatacataccaaagttatcaa
tccatcactaaattgtactcgcTCTATCACGtaacagattgttaatataa
tatgagaaatgtgaagtgttattatattacttatatttgaaaagaaaact
ttatcgatgtagtaatcactaaaaaactaattagcatgctttcaacgaag
atgcccaaatcacaacaacattttgcacgcacGGAagtttttagtagacc
tttttaccatgaaccgaaaataattaaaagaacccggtttccttatatga
atttgaaaagggaccgggtgtgcTAGCTGCGGCAcctagaagtttaacgc
ggcctcttagcgcctagagcgcgtgcttgcaataaacaataaggacaggg
aaaccaggtcgactaagcgcgcgaattatttctatcacgtgacttgaagc
gtaataaagttgtaaaattttaatgatgaagacaagagaaagttacgagg
aaatttgcatgcgtttcgtgtgttgtgtgaaactgcttataatttggctg
tttttttttattgaaaggattgcaatgtttactgaacttctagtttaatg
gatgaacttgttcgataagaatgataccaagaatttcattcaNNNNNNNN
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NNNNNCcccccccccatcttcctgggggggatgatcccatgGCCTTTGCA
GAAGACTTTTCGTATTTGCCATACCTTGAATTTAATTATGATTCCCAACA
CCTTTTTTAGAGCTACTGTCGTTTTGTACAAGTTTCCCATTTCCGCCATt
cgcactaagattcctttttaattttctaggggaaaaagaccaggactccg
ggtagttgaaaaataagcttgGTAAAGTTATGCAGTTTCATGAGTAAACA
CAAAATTTTCTGTACCTTTAGaaaaaaaccctttccaatctcatgcctGT
TATCCCTGAAAAATAGCAGAAAAATTCTGGGAAAAGTGatacaagaatct
tagtgccaAGAATCTTAGTGTCaaaatgggaaacttataaaaaacagCGT
TAGGTATAGGAAAGGTAGAATCACTGATACGCATATTTTGTTGTTCTCCA
CTGTTGGTCtctgggaggtaaacaaacttGTTTTTGCTTGCGTTTCCATA
GGGAAAGTCGGGGTTTtaagcttttcttaagttctgtctaGCAGAATCCT
CTCAAGTTTCTATGATATTACAGACTTTTCATCTACCGTTTTCCAGACCA
tttaaaaagaacaacaaataactattaaaaagcaacaaaaagaacaacag
accccaaccctaaccctaactatcaaagaacaaTATATTTTGCCGTCCCA
AACGTGACCTTGGTCAGTGACTACCACCCCTAGATACATGCATGTGTATA
AGTCtttatttgggtgagctggaaattAGATTAACCAACTTTTCaccacc
ctgaaaatttgtTCCCAAAAATATGTCAGCATCAAcagttagaagctgaa
aaacCAATTTTCTCCAAACCTGTTGGAGGCAAAAACACATTtatttacct
cccaaacaatttgaTACATAATGATGGAGTGCGCATTTTCctgggccatt
tctgagaattTGAATTACAGTATGGGATGGTATATTGAAACTAGATTTCA
CCCTCAAAGAAAAAAGGTCATCAACCCAATTTTAGGAAAGAAGACTacgt
ttttcagccaaagtgTCAAATTGTgatgttcaatttttttaaatttagtc
cAGCGGCTGTTAAAGttaaaaggttttaaaaaatgcaaaaagtcattttt
caaaagttaaaaaaaaacatgcgtaaaattgatattgatttttaaaaaaa
gttatgatTGATTCGTAACTAATTTTTCAATAGAATTACAGATAGTGCTT
CGATTCATCAGGCCTTGATAAcacactaaataaaaataatcatGCACATG
GATAAATGGATCAGAGATTGAGGTCTTGAAAAattgacacccaaatccgc
gaaatccgagAAATTTAATCCCTACAAANNNNNNNNNNNNNNNNNNNNca
atgtttactgaacttctagtttaatggatgaacttgttcgataagaatga
taccaagaatttcattcaaggtttgttttgattattttacagatccggtg
tcaaAATcagaagacgcatgtcgatattagatgATCCTACGGTAtgaatt
ttaggcaaaattggaaCCTTGttagaacgaaaaattgaaagtttttcccA
TCATTTTGGCCTTTACAAGTTTTACAGAACATTCTCGGGTCATGGGCCAG
AATATTGAAACATTGTTTTGGCCTGAACAGTGATGTTTTTGGaggcaaaa
atccaaaattttctggTCCAAACCTGGCACGAACACGCCCCCTGTGATCT
GATGCCTGAACATGCATAGCCAAGTTCTAAGCTAATTAAAGATGTATACT
ATTAGCTTATTTACAAACAAACTTAATAAAAACATGCTCGCCTTTCAtgg
cgtcctccagctttttggtcccccctaatatgagctaaaatcccccatct
ggccttcccccccacctgtctttaaaattcgtgTTCCCCCCAATTGGGAA
ATCCNCGGGGTTTtaagcttttcttaagttctgtctaGCAGAATCCTCTC
AAGTTTCTATGATATTACAGACTTTTCATCTACCGTTTTCCAGACCAttt
aaaaagaacaacaaataactattaaaaagcaacaaaaagaacaacagacc
ccaaccctaaccctaactatcaaagaacaaTATATTTTGCCGTCCCAAAC
GTGACCTTGGTCAGTGACTACCACCCCTAGATACATGCATGTGTATAAGT
CtttatttgggtgagctggaaattAGATTAACCAACTTTTCaccaccctg
aaaatttgtTCCCAAAAATATGTCAGCATCAAcagttagaagctgaaaaa
cCAATTTTCTCCAAACCTGTTGGAGGCAAAAACACATTtatttacctccc
aaacaatttgaTACATAATGATGGAGTGCGCATTTTCctgggccatttct
gagaattTGAATTACAGTATGGGATGGTATATTGAAACTAGATTTCACCC
TCAAAGAAAAAAGGTCATCAACCCAATTTTAGGAAAGAAGACTacgtttt
tcagccaaagtgTCAAATTGTgatgttcaatttttttaaatttagtccAG
CGGCTGTTAAAGttaaaaggttttaaaaaatgcaaaaagtcatttttcaa
aagttaaaaaaaaacatgcgtaaaattgatattgatttttaaaaaaagtt
atgatTGATTCGTAACTAATTTTTCAATAGAATTACAGATAGTGCTTCGA
TTCATCAGGCCTTGATAAcacactaaataaaaataatcatGCACATGGAT
AAATGGATCAGAGATTGAGGTCTTGAAAAattgacacccaaatccgcgaa
atccgagAAATTTAATCCCTACAAAAGTTCATTAAGTACTAAATTTGTTA
TTTAAGTGTAATATACTTTTTGATAATTATGAAGGTGATTTATTTAGCCT
TTCAGTCACACTTGTGTTAGACGACAAAAAGCTAATAAAATAGTATGGTT
TAGATTGATGTAGTGGTAATTTTTTATGATTAGCACCCAAATGCTGTCAA
ATATGTTTTGTAATTGATAGTAAAACAATCTTTCTAATAGATTTCTACCT
ATATAGAAACTCATTTTCCCATAGAAATCTCAAGCAGACTTGGTAGCTGA
GGCGAAAGCAAAATATGGAGATTTGGTTGCTGAGaatattttcactaaaa
tcttGAACAAAGAGATTCCTGCCAAGCTGATTTACGAAGATGACAAATGT
GTTGCATTCAATGATGTCAACCCGCAAGCACCAACGCATTTCCTTGTTAT
TCCACGTTTCCCAATACCAAGACTTCAAGATGTTAAAGAAGATGACAAAG
CTTTGTtaggtacacattttttataagaacaaactatatactTTCTTTTg
ccctttttattttgatatttatttttagGGGGAGAACAATTTTGTATGAA
ATTGAGCCTAACAAATaataatataagaacaaactatataagagccaaaa
gttatgaacattcgaaggcttcaaaaactttgtgtaaaaaacgtgtattt
gatcATAGGCTAATGATCCTGATGATTAAGTCAACCTTTGAGCACTTTAA
TCGGAGGCTggttttgttttgagaagtcGTTTGAAAGAAAGTAGGactaa
atttgaatttgaatactCTTAGTAAGTAAATACTCTACAGTGCttccgaa
aaaaaaagttggaacACATTTTGTATGaagtaatttaaatttttaatctt
ttcttacattttaatgattttaggtCACTTGATGTTCGTTGCTAACAAAG
TAGCTGGGGAGCAAGGCTTACACGAGAAAGGATATCGTATGGTAGTCAAC
AATGGAGAGCAAGGCTGCCAGTCTGTGATCCACATCCATCTTCACGTTAT
CGGTGGACGCCAACTCACCTGGCCACCAGGCTAACAATAAGCACTTATTT
ATATGgtataaatatttcattttttttgtaatacaaccttacatttttat
aaattcaGAAATATTGCAGATTCTCTTCTAGCAATTATTGTTTGCTTTTG
ATTCATTCTGTCGAATATTTGgttctttaaatgttcttatgtcttgcttt
taagattttaaattgTCTAAAATTTGAATCCTTTTCAACTCAAGTACCTG
ATTAAAAACACTTCACCTTGACCTAAAACCcttttttaaagggacataaa
agtagtaaaatgtaaacattgcgcgaaccacgtgtcattacagagaacaa
ttaaaatcacgtgtccaaaacaaacttgtaaaac

Coding sequence (CDS) from alignment at sc0000217:132257..144790+

>TCONS_00015804 ID=TCONS_00015804|Name=TCONS_00015804|organism=Clytia hemisphaerica|type=CDS|length=2295bp|location=Sequence derived from alignment at sc0000217:132257..144790+ (Clytia hemisphaerica)
GACCATTTATTTTTCGCGCGAAAAAAGAGAGAGCATAGCAAACAAAGGGT
GCCGCCCATTTCAAAAATTACCGAAAAAAACGTGGGTTCTTTTGAAAACT
TATATGCCTTTGttacttttgaacaaaaatcttatgaaattataaagatt
ttcaaattaaattccaaaAAGTGTTGTTATTCTTGTCATGAAAATTTGCC
AAGAAGTCTGGGGTTAAGAATGGGCGGTTATCGGGTGTTGGctatcactt
tcgttttcattttcacGATGCTAATTCTTCGAATCGTTCCTTCCATCCAG
AGACTTTTGCCAACCGCTTTCAAGAATCTTTCAGTGTCAGCATTCACTGG
TACAAGAGCTATGTCAGCTAAATCTCAAGCAGACTTGGTAGCTGAGGCGA
AAGCAAAATATGGAGATTTGGTTGCTGAGaatattttcactaaaatcttG
AACAAAGAGATTCCTGCCAAGCTGATTTACGAAGATGACAAATGTGTTGC
ATTCAATGATGTCAACCCGCAAGCACCAACGCATTTCCTTGTTATTCCAC
GTTTCCCAATACCAAGACTTCAAGATGTTAAAGAAGATGACAAAGCTTTG
TtaggtCACTTGATGTTCGTTGCTAACAAAGTAGCTGGGGAGCAAGGCTT
ACACGAGAAAGGATATCGTATGGTAGTCAACAATGGAGAGCAAGGCTGCC
AGTCTGTGATCCACATCCATCTTCACGTTATCGGTGGACGCCAACTCACC
TGGCCACCAGGCTAAGACCATTTATTTTTCGCGCGAAAAAAGAGAGAGCA
TAGCAAACAAAGGGTGCCGCCCATTTCAAAAATTACCGAAAAAAACGTGG
GTTCTTTTGAAAACTTATATGCCTTTGttacttttgaacaaaaatcttat
gaaattataaagattttcaaattaaattccaaaAAGTGTTGTTATTCTTG
TCATGAAAATTTGCCAAGAAGTCTGGGGTTAAGAATGGGCGGTTATCGGG
TGTTGGctatcactttcgttttcattttcacGATGCTAATTCTTCGAATC
GTTCCTTCCATCCAGAGACTTTTGCCAACCGCTTTCAAGAATCTTTCAGT
GTCAGCATTCACTGGTACAAGAGCTATGTCAGCTAAATCTCAAGCAGACT
TGGTAGCTGAGGCGAAAGCAAAATATGGAGATTTGGTTGCTGAGaatatt
ttcactaaaatcttGAACAAAGAGATTCCTGCCAAGCTGATTTACGAAGA
TGACAAATGTGTTGCATTCAATGATGTCAACCCGCAAGCACCAACGCATT
TCCTTGTTATTCCACGTTTCCCAATACCAAGACTTCAAGATGTTAAAGAA
GATGACAAAGCTTTGTtaggtCACTTGATGTTCGTTGCTAACAAAGTAGC
TGGGGAGCAAGGCTTACACGAGAAAGGATATCGTATGGTAGTCAACAATG
GAGAGCAAGGCTGCCAGTCTGTGATCCACATCCATCTTCACGTTATCGGT
GGACGCCAACTCACCTGGCCACCAGGCTAAGACCATTTATTTTTCGCGCG
AAAAAAGAGAGAGCATAGCAAACAAAGGGTGCCGCCCATTTCAAAAATTA
CCGAAAAAAACGTGGGTTCTTTTGAAAACTTATATGCCTTTGttactttt
gaacaaaaatcttatgaaattataaagattttcaaattaaattccaaaAA
GTGTTGTTATTCTTGTCATGAAAATTTGCCAAGAAGTCTGGGGTTAAGAA
TGGGCGGTTATCGGGTGTTGGctatcactttcgttttcattttcacGATG
CTAATTCTTCGAATCGTTCCTTCCATCCAGAGACTTTTGCCAACCGCTTT
CAAGAATCTTTCAGTGTCAGCATTCACTGGTACAAGAGCTATGTCAGCTA
AATCTCAAGCAGACTTGGTAGCTGAGGCGAAAGCAAAATATGGAGATTTG
GTTGCTGAGaatattttcactaaaatcttGAACAAAGAGATTCCTGCCAA
GCTGATTTACGAAGATGACAAATGTGTTGCATTCAATGATGTCAACCCGC
AAGCACCAACGCATTTCCTTGTTATTCCACGTTTCCCAATACCAAGACTT
CAAGATGTTAAAGAAGATGACAAAGCTTTGTtaggtCACTTGATGTTCGT
TGCTAACAAAGTAGCTGGGGAGCAAGGCTTACACGAGAAAGGATATCGTA
TGGTAGTCAACAATGGAGAGCAAGGCTGCCAGTCTGTGATCCACATCCAT
CTTCACGTTATCGGTGGACGCCAACTCACCTGGCCACCAGGCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008839XLOC_008839Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015804-proteinTCONS_00015804-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015804-exon-sc0000217-1491911889:132257..132626TCONS_00015804-exon-sc0000217-1491911889:132257..132626Clytia hemisphaericaexon
TCONS_00015804-exon-sc0000217-1510915933:132257..132626TCONS_00015804-exon-sc0000217-1510915933:132257..132626Clytia hemisphaericaexon
TCONS_00015804-exon-sc0000217-1575043694:132257..132626TCONS_00015804-exon-sc0000217-1575043694:132257..132626Clytia hemisphaericaexon
TCONS_00015804-exon-sc0000217-1491911889:143631..143865TCONS_00015804-exon-sc0000217-1491911889:143631..143865Clytia hemisphaericaexon
TCONS_00015804-exon-sc0000217-1510915933:143631..143865TCONS_00015804-exon-sc0000217-1510915933:143631..143865Clytia hemisphaericaexon
TCONS_00015804-exon-sc0000217-1575043694:143631..143865TCONS_00015804-exon-sc0000217-1575043694:143631..143865Clytia hemisphaericaexon
TCONS_00015804-exon-sc0000217-1491911889:144280..144790TCONS_00015804-exon-sc0000217-1491911889:144280..144790Clytia hemisphaericaexon
TCONS_00015804-exon-sc0000217-1510915933:144280..144790TCONS_00015804-exon-sc0000217-1510915933:144280..144790Clytia hemisphaericaexon
TCONS_00015804-exon-sc0000217-1575043694:144280..144790TCONS_00015804-exon-sc0000217-1575043694:144280..144790Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000217supercontigsc0000217:132257..144790 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
273.226	276.404	331.304	361.941	107.477	88.6295	80.3953	87.4578	108.877	105.315	88.6771	101.246	81.1637	86.4681	123.911	132.168	135.827	121.396	56.2333	53.5142	66.2105	63.1695	136.677	121.878	47.1525	50.3701	87.9267	78.082	76.1981	71.6238
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001310Histidine_triad_HIT
IPR011146HIT-like
IPR019808Histidine_triad_CS
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003824 catalytic activity
Blast
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BLAST of TCONS_00015804 vs. Swiss-Prot (Human)
Match: HINT1 (Histidine triad nucleotide-binding protein 1 OS=Homo sapiens GN=HINT1 PE=1 SV=2)

HSP 1 Score: 155.992 bits (393), Expect = 7.699e-46
Identity = 72/122 (59.02%), Postives = 94/122 (77.05%), Query Frame = 2 
Query:  398 AKAKYGDLVAENIFTKILNKEIPAKLIYEDDKCVAFNDVNPQAPTHFLVIPRFPIPRLQDVKEDDKALLGHLMFVANKVAGEQGLHEKGYRMVVNNGEQGCQSVIHIHLHVIGGRQLTWPPG 763
            AKA+      + IF KI+ KEIPAK+I+EDD+C+AF+D++PQAPTHFLVIP+  I ++   ++DD++LLGHLM V  K A + GL+ KGYRMVVN G  G QSV H+HLHV+GGRQ+ WPPG
Sbjct:    6 AKAQVARPGGDTIFGKIIRKEIPAKIIFEDDRCLAFHDISPQAPTHFLVIPKKHISQISVAEDDDESLLGHLMIVGKKCAADLGLN-KGYRMVVNEGSDGGQSVYHVHLHVLGGRQMHWPPG 126
The following BLAST results are available for this feature:
BLAST of TCONS_00015804 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HINT17.699e-4659.02Histidine triad nucleotide-binding protein 1 OS=Ho... [more]
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