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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015799 ID=TCONS_00015799|Name=TCONS_00015799|organism=Clytia hemisphaerica|type=transcript|length=2965bp
cgctattcatgatattcattacgtaatgttttatagGGAATTAACCCGGT
TTTTACCAATTGAGGCAAATTTGAAAACCTTCCTAATTGGGCTATCTCTG
CAGAAAACATTGCGTTGTGAATATCGTGAATTGCGTGTTTTCAAATAGCC
TTTTCCCTTTTAATATTTCCAATATAAATTGCATGCCCTGACGAAGGATT
GAGAGCACCACCCAGTTTTAACACAGCCTAAAGCAGTAAGCAATCAAGTG
ATAAaattgactctcgctaattcgaactcaaacggGGCATGTAATTTGCT
CAAATCGTAGATAAATTGGAAAAAAGAGAACATTCTGCGAAAGTTTTTCC
CCACAACGGGGACTGAGAATTACTTAAAAGGATCCATTCAatgtagcgag
cacctcactaaaattTTTCACCTCGTTTCATAGAGAGTTctactttgacg
atttttgaaaaatagaagcctttcaagtgttttgatctacccctggacat
ttcgatttttcaacccctggacacgtgtttcacccctggacaagcatcaa
attGACCCCCTGGGCACAAATATTTACACCTGGACATCATattcacccca
tggacatggcagtttttcagggttttttcaatacccctggacaatatcct
ccaccccccatgaatggtttttttctggaagagcccaatagaCGTTACTG
CGCAAATACAAAGCCGTGatgtctagtataggctacatTCAATGGTGCAT
ATTCATtaatttatgatatgcaccattgcaatgtcttctgacattaccaT
CACGAACCCATTGcattggtgcatatcatgaatagaagttcgaattagcg
agagttcacTGTAGTTGTACAGAGCAGCGGTTTTAAGCGTTAATCACATG
GAAGGTTGTTATGTATTACAAAGGGCTTCGAAAATGGGATATTTTTCTAC
ATAGTccgggttttttttaagaataaataAAAGACCAGTTTaagttttgg
tgtttttcggTGATTTTTTCTGCTAACTGAAACATCGTTTTGAGGTTCAT
CTGGCGTCGATGATGCcatctttcaaatttcaaaatattcaattatGAGA
GTATTGGACTGTTCTGTTAAATAACCATACAGAGTGGTGGACGAACCTTT
GCAAGTCAAAATAAAACtcttggaaatgtgtggataccccttGGAATATG
GCAAAATTAGCAAAGATTTCCTGGAAAAATTATATCCTTAAAGTGAgaaa
tttagaatatttttttaccccttggaaaaatgaaaaaacactccCTGGAT
TACCCCCAGGTCTTAGCTTTCTACGTAGTAGCTTCCTCCGTTTCGGACGT
AAAACTCTCCGGATGAAACAGTAAATCCGTCAACTTCTTAAACAATGGGC
AAAAATGTGGGTTATGCGAATAGGGtaatttgttgatattttagCTTCAT
TGACCTTGAATTGATAACATTTCCAGAAAATAGAGGGGTTTGCCGGGGAG
CAAATTATGTTTAAATTTGAAGGGGAAGCAATCAACTGGGACATAAAGAC
GTGAAGGCATTAGGTAAAATTCGTGATTAAGCGCTTAAATGACCACGCAA
AGTGCTCTGTACAACCTATCAGGCCGTTAGGATAGAGGGAACGCCTTTTT
CGCGATAATGGGGAGAGCCAACTTTTAGGTAAAACTTTTTTAGCGATAAT
GAAGTTTGATGAAGGAAATAAACACCTGTGCATAAAGTAAATGGTCACAG
AAAAAGTTCAAACGTTGGTGAAAAATTCCATCCAATGGATTTGTATTCAA
TATGTACATCCTCGCCCCGGTCCCATCACAAAATCATCAGAAACAGACCC
TTTCTTAAAGTTTCTGAACCTTAAGATTTCGGAGGAAGATTCACGAAAGA
AAATTCCCAAAATACCGTCCGAGCTATTAGGCTAAGTAACGTTTGTTGCA
CTCCCTTAACAGACAGAACTTCCAccccaaaaactttttttgaccaGGAA
ATCCATATACAGAATTtcgaagaaaataatttttcgagttttgcCTGTCA
AgggtttttggtcaaaatagaaATTTGAGGTCTAAATGGCTACTAGAtga
aaagcaaaaacaaaagctaaaaaataatagTCTGCAAAAATATTCAAGTA
TTAGCCATCGAGAAAATGGCAAGTGACACTTCTATCATTTCCCTTCCCTT
GTACCCAGTCCATCTAGAATGTCACTAGTATCAATATAGCTTCGTAATCA
GAGATGCTCTTTCACCTCTCCTTGGCAGATAGGATAGAGTGCCTTGTGAG
CAAAAAATAAAGATTGCTTGATGTCTTTACTCCTTATGGAAGGGCTTTTC
CAGACcgagaaaatgagaaaaatatcaaagaaaaaaacattgccctgttt
cattttatatccatacatgggGTGAGTTGATGGCCTTTTTCAAgccaaaa
aggtttttttcaagccaaaaagGTTTAtaagattgggctcttccaCAAAA
TGTTCGTAGGATATAGTGTCCGCCGGggttagtgaaaaatctacaaaaat
tgcCTTGTCCGgaggtaaacttgctctgtttgaggggtATTTAGAATGTT
gaaggggtcaactgatgcttgtccggagGGGCAAAAGAAAGTCACATTGT
CCGGAGGGTAGATGtccaaaaattgttataatcctccacccccaatttcc
aaattttttcttgaaaaacccATTGTGTTATCTACTGGAAAAACGACACA
ATTCGCAAATATCTGAAAGAAGGTTTTAGTGTCCTTGAAAAACTTTTATA
CCGCAAAGTAAGGATGGGCAAACTGAAGTCAATCTTTTTGCGCTTGGAAA
TTTCAGAATAATGTtcaaccccctggaaaaaaattaggTCCCTGGAAATT
CCAAAACTTTTCGTTGAAAACATGGAAAGAATATAAacatgtatggatat
aaaatggaatgggcC Run BLAST on NCBI transcript from alignment at sc0000216:359896..362860 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00015799 ID=TCONS_00015799|Name=TCONS_00015799|organism=Clytia hemisphaerica|type=transcript|length=2965bp|location=Sequence derived from alignment at sc0000216:359896..362860 (Clytia hemisphaerica)
GgcccattccattttatatccatacatgtTTATATTCTTTCCATGTTTTC
AACGAAAAGTTTTGGAATTTCCAGGGAcctaatttttttccagggggttg
aACATTATTCTGAAATTTCCAAGCGCAAAAAGATTGACTTCAGTTTGCCC
ATCCTTACTTTGCGGTATAAAAGTTTTTCAAGGACACTAAAACCTTCTTT
CAGATATTTGCGAATTGTGTCGTTTTTCCAGTAGATAACACAATgggttt
ttcaagaaaaaatttggaaattgggggtggaggattataacaatttttgg
aCATCTACCCTCCGGACAATGTGACTTTCTTTTGCCCctccggacaagca
tcagttgaccccttcAACATTCTAAATacccctcaaacagagcaagttta
cctcCGGACAAGgcaatttttgtagatttttcactaaccCCGGCGGACAC
TATATCCTACGAACATTTTGtggaagagcccaatcttaTAAACctttttg
gcttgaaaaaaacctttttggcTTGAAAAAGGCCATCAACTCACcccatg
tatggatataaaatgaaacagggcaatgtttttttctttgatatttttct
cattttctcgGTCTGGAAAAGCCCTTCCATAAGGAGTAAAGACATCAAGC
AATCTTTATTTTTTGCTCACAAGGCACTCTATCCTATCTGCCAAGGAGAG
GTGAAAGAGCATCTCTGATTACGAAGCTATATTGATACTAGTGACATTCT
AGATGGACTGGGTACAAGGGAAGGGAAATGATAGAAGTGTCACTTGCCAT
TTTCTCGATGGCTAATACTTGAATATTTTTGCAGActattattttttagc
ttttgtttttgcttttcaTCTAGTAGCCATTTAGACCTCAAATttctatt
ttgaccaaaaacccTTGACAGgcaaaactcgaaaaattattttcttcgaA
ATTCTGTATATGGATTTCCtggtcaaaaaaagtttttggggTGGAAGTTC
TGTCTGTTAAGGGAGTGCAACAAACGTTACTTAGCCTAATAGCTCGGACG
GTATTTTGGGAATTTTCTTTCGTGAATCTTCCTCCGAAATCTTAAGGTTC
AGAAACTTTAAGAAAGGGTCTGTTTCTGATGATTTTGTGATGGGACCGGG
GCGAGGATGTACATATTGAATACAAATCCATTGGATGGAATTTTTCACCA
ACGTTTGAACTTTTTCTGTGACCATTTACTTTATGCACAGGTGTTTATTT
CCTTCATCAAACTTCATTATCGCTAAAAAAGTTTTACCTAAAAGTTGGCT
CTCCCCATTATCGCGAAAAAGGCGTTCCCTCTATCCTAACGGCCTGATAG
GTTGTACAGAGCACTTTGCGTGGTCATTTAAGCGCTTAATCACGAATTTT
ACCTAATGCCTTCACGTCTTTATGTCCCAGTTGATTGCTTCCCCTTCAAA
TTTAAACATAATTTGCTCCCCGGCAAACCCCTCTATTTTCTGGAAATGTT
ATCAATTCAAGGTCAATGAAGctaaaatatcaacaaattaCCCTATTCGC
ATAACCCACATTTTTGCCCATTGTTTAAGAAGTTGACGGATTTACTGTTT
CATCCGGAGAGTTTTACGTCCGAAACGGAGGAAGCTACTACGTAGAAAGC
TAAGACCTGGGGGTAATCCAGggagtgttttttcatttttccaaggggta
aaaaaatattctaaatttcTCACTTTAAGGATATAATTTTTCCAGGAAAT
CTTTGCTAATTTTGCCATATTCCaaggggtatccacacatttccaagaGT
TTTATTTTGACTTGCAAAGGTTCGTCCACCACTCTGTATGGTTATTTAAC
AGAACAGTCCAATACTCTCataattgaatattttgaaatttgaaagatgG
CATCATCGACGCCAGATGAACCTCAAAACGATGTTTCAGTTAGCAGAAAA
AATCAccgaaaaacaccaaaacttAAACTGGTCTTTtatttattcttaaa
aaaaacccggACTATGTAGAAAAATATCCCATTTTCGAAGCCCTTTGTAA
TACATAACAACCTTCCATGTGATTAACGCTTAAAACCGCTGCTCTGTACA
ACTACAgtgaactctcgctaattcgaacttctattcatgatatgcaccaa
tgCAATGGGTTCGTGAtggtaatgtcagaagacattgcaatggtgcatat
cataaattaATGAATATGCACCATTGAatgtagcctatactagacatCAC
GGCTTTGTATTTGCGCAGTAACGtctattgggctcttccagaaaaaaacc
attcatggggggtggaggatattgtccaggggtattgaaaaaaccctgaa
aaactgccatgtccatggggtgaatATGATGTCCAGGTGTAAATATTTGT
GCCCAGGGGGTCaatttgatgcttgtccaggggtgaaacacgtgtccagg
ggttgaaaaatcgaaatgtccaggggtagatcaaaacacttgaaaggctt
ctatttttcaaaaatcgtcaaagtagAACTCTCTATGAAACGAGGTGAAA
aattttagtgaggtgctcgctacatTGAATGGATCCTTTTAAGTAATTCT
CAGTCCCCGTTGTGGGGAAAAACTTTCGCAGAATGTTCTCTTTTTTCCAA
TTTATCTACGATTTGAGCAAATTACATGCCccgtttgagttcgaattagc
gagagtcaattTTATCACTTGATTGCTTACTGCTTTAGGCTGTGTTAAAA
CTGGGTGGTGCTCTCAATCCTTCGTCAGGGCATGCAATTTATATTGGAAA
TATTAAAAGGGAAAAGGCTATTTGAAAACACGCAATTCACGATATTCACA
ACGCAATGTTTTCTGCAGAGATAGCCCAATTAGGAAGGTTTTCAAATTTG
CCTCAATTGGTAAAAACCGGGTTAATTCCctataaaacattacgtaatga
atatcatgaatagcg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00015799-exon-sc0000216-1491911889:359896..362860 | TCONS_00015799-exon-sc0000216-1491911889:359896..362860 | Clytia hemisphaerica | exon |
| TCONS_00015799-exon-sc0000216-1510915933:359896..362860 | TCONS_00015799-exon-sc0000216-1510915933:359896..362860 | Clytia hemisphaerica | exon |
| TCONS_00015799-exon-sc0000216-1575043694:359896..362860 | TCONS_00015799-exon-sc0000216-1575043694:359896..362860 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000216 | supercontig | sc0000216:359896..362860 . |
Blast
The following BLAST results are available for this feature:
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