TCONS_00015790 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015790
Unique NameTCONS_00015790
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length544

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015790 ID=TCONS_00015790|Name=TCONS_00015790|organism=Clytia hemisphaerica|type=transcript|length=544bp
CATCCCAGCGAAGCTGCTGGACGAAGTTTGCATTAACGTGTGAAAAGAAT
CTATTTTGCTCCCAATCATTAATGAAGATCTCCCGAACCAAGCTAAAAAA
AAGCAGGGAAGCAAGACTTGATGTCAGTGCACTCAACTTTTGGACGAATG
TTATGGTCAACGAGCATTCTTTGACGTAAGGGTTTTAAAGATGGAAAATT
CAAACCAATCGTGGCTAACGGTGCAATGGGCGTGGAATGCATTCGTTTCT
ATTATTAACGGTTATCAGAGTTGTTGGCCGACAAGCGAGAAGTCCCTTAG
TCAATTATCTtacataggttaaaaatattatgcAGGTTAAAAATTTATAT
CAGGTTAAAAACAATATCAAAAAGACTTTCACGGTTTTCAAATCGTTTCG
AAATGAACTATGGGATTGAGAGTCGCACAAATTCGAGTCAAAATAATTAT
GACGTGTAACATGAGGTGCTATGAGAAAGTTTAGTCAACCTACGGTATAC
CAACATCATATTTAGAACCATTTAAACTACCTAAGTCAAAAAGC
Run BLAST on NCBI

transcript from alignment at sc0000216:306510..307053

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015790 ID=TCONS_00015790|Name=TCONS_00015790|organism=Clytia hemisphaerica|type=transcript|length=544bp|location=Sequence derived from alignment at sc0000216:306510..307053 (Clytia hemisphaerica)
GCTTTTTGACTTAGGTAGTTTAAATGGTTCTAAATATGATGTTGGTATAC
CGTAGGTTGACTAAACTTTCTCATAGCACCTCATGTTACACGTCATAATT
ATTTTGACTCGAATTTGTGCGACTCTCAATCCCATAGTTCATTTCGAAAC
GATTTGAAAACCGTGAAAGTCTTTTTGATATTGTTTTTAACCTGATATAA
ATTTTTAACCTgcataatatttttaacctatgtaAGATAATTGACTAAGG
GACTTCTCGCTTGTCGGCCAACAACTCTGATAACCGTTAATAATAGAAAC
GAATGCATTCCACGCCCATTGCACCGTTAGCCACGATTGGTTTGAATTTT
CCATCTTTAAAACCCTTACGTCAAAGAATGCTCGTTGACCATAACATTCG
TCCAAAAGTTGAGTGCACTGACATCAAGTCTTGCTTCCCTGCTTTTTTTT
AGCTTGGTTCGGGAGATCTTCATTAATGATTGGGAGCAAAATAGATTCTT
TTCACACGTTAATGCAAACTTCGTCCAGCAGCTTCGCTGGGATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008826XLOC_008826Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015790-exon-sc0000216-1491911889:306510..307053TCONS_00015790-exon-sc0000216-1491911889:306510..307053Clytia hemisphaericaexon
TCONS_00015790-exon-sc0000216-1510915933:306510..307053TCONS_00015790-exon-sc0000216-1510915933:306510..307053Clytia hemisphaericaexon
TCONS_00015790-exon-sc0000216-1575043694:306510..307053TCONS_00015790-exon-sc0000216-1575043694:306510..307053Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000216supercontigsc0000216:306510..307053 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.635422	1.23927	0.839367	0.938503	0	0	0	0	0	0	0	0	0.0704332	0.0731456	0	0	0	0.162973	0	0	0.102394	0	0.121427	0	0	0.101478	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00015790 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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