TCONS_00015778 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015778
Unique NameTCONS_00015778
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length575

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015778 ID=TCONS_00015778|Name=TCONS_00015778|organism=Clytia hemisphaerica|type=transcript|length=575bp
tttttgaaacagtgagacaggggtataccCAAGGAAAAcagataaaattt
tttgaaacagtgagacaggggtgcagACAAAGAACAGCAAGACAAGTTTT
TTGAAACACTTAGACAGGGTACAAACCCAAGAACAGCAGATCTATGGGAC
AGGGTACAAAACTAGGGTCTCAGGAATCGAAGAAAAACAGATCTCAAGGA
TTTTTCCAGCATTAAGACCAACAGATCAAGATTCATAGGTTGAATATACG
TGAACAgcagatattcaaaaaaaaaggtCGCCGCTGGATGCTTGTGAGTA
GAATTGCTATCTTTGTTTTCCATGTCTTCTGGTCTTGGTGAGAAAAAGGA
TCTCGTGGTGTAAAGGATTCGCTCTTCTATGTTTCGGGTCTGGGTAcgat
tttagtttagtttagtacgattgttttgtttttttctctttgtatTCTGG
TGATTTTGTGATAATGGGATGTACGGGGTCTGGGTTCTACATTGGTGTCA
GCACATAAATACATACATACGAACAATGAATTATAGAGGATAATTTAAAA
CTACTACACCGACACTAACGCCGAT
Run BLAST on NCBI

transcript from alignment at sc0000216:78363..78937

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015778 ID=TCONS_00015778|Name=TCONS_00015778|organism=Clytia hemisphaerica|type=transcript|length=575bp|location=Sequence derived from alignment at sc0000216:78363..78937 (Clytia hemisphaerica)
ATCGGCGTTAGTGTCGGTGTAGTAGTTTTAAATTATCCTCTATAATTCAT
TGTTCGTATGTATGTATTTATGTGCTGACACCAATGTAGAACCCAGACCC
CGTACATCCCATTATCACAAAATCACCAGAatacaaagagaaaaaaacaa
aacaatcgtactaaactaaactaaaatcgTACCCAGACCCGAAACATAGA
AGAGCGAATCCTTTACACCACGAGATCCTTTTTCTCACCAAGACCAGAAG
ACATGGAAAACAAAGATAGCAATTCTACTCACAAGCATCCAGCGGCGacc
tttttttttgaatatctgcTGTTCACGTATATTCAACCTATGAATCTTGA
TCTGTTGGTCTTAATGCTGGAAAAATCCTTGAGATCTGTTTTTCTTCGAT
TCCTGAGACCCTAGTTTTGTACCCTGTCCCATAGATCTGCTGTTCTTGGG
TTTGTACCCTGTCTAAGTGTTTCAAAAAACTTGTCTTGCTGTTCTTTGTc
tgcacccctgtctcactgtttcaaaaaattttatctgTTTTCCTTGggta
tacccctgtctcactgtttcaaaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008814XLOC_008814Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015778-exon-sc0000216-1491911889:78363..78937TCONS_00015778-exon-sc0000216-1491911889:78363..78937Clytia hemisphaericaexon
TCONS_00015778-exon-sc0000216-1510915933:78363..78937TCONS_00015778-exon-sc0000216-1510915933:78363..78937Clytia hemisphaericaexon
TCONS_00015778-exon-sc0000216-1575043694:78363..78937TCONS_00015778-exon-sc0000216-1575043694:78363..78937Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000216supercontigsc0000216:78363..78937 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.193867	0.189051	0.32926	0.536882	0.261441	0.826377	0.498494	0.350013	0.653473	0.404716	0.589241	0.710131	0.322338	0.669502	0.49538	0.236275	0.0727678	0.223754	0.412171	0.754787	0.093721	0.137141	0	0.101044	3.1222	2.04343	0.132915	0.425553	0.753122	0.54808
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00015778 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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