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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015694 ID=TCONS_00015694|Name=TCONS_00015694|organism=Clytia hemisphaerica|type=transcript|length=1674bp ATTTGATGTTAATGCGAATTCACAGAGTGAAATAAAACTTGTCTGAAGGC TAGTATATACTATCATGTAGAGAACATACTCGACTTGGTTTTTGGAAGGC TCCCTCAACAGATGGAATGACTAAAAAGGAGAAGGCAATCGAAAATATCG ATGCCTTCACACATTTTGTAGCTGGTTGGGTCTCAGGTTGTGCGGGCGTG TTGGTGAGTCATCCTTTGGACACAGTGAAAGTTCGTTTACAAACGCAAGG CGTATCTGCAATACAACAACAGTATCGGGGTACATGGCATTGTCTATCTG AAAccatcaaaaatgaaaagGTTTATGGGTTGTTCAAAGGTATGTCGTCA CCGCTCCTGGGAACTGCTCTTTGGAATGCTGTTATCTTCGGTACCTATGG CAACACCATACGCTGGTTGGCTGGTGATAGCCTAGAAGAACAGCATCGGA TGAGTAATGTTGTAATCGCTAGTCTAGCGTCAGGTTTCACTCAAACTTTT GTTATTACACCTCTGGAgctcaccaaaacgaggctacaAATTCAAACATC GcagaaaaatcaagtttataAAGgtttgattgattgttgtCGACAGATCT ATCGCCAACAAGGTTTTTTCGGACTCTTCAAAGGGTTCAATGCAACGTTC ATTCGAGATGCCATCGGTTTCACTGCGTTCTTTGGAATTTTCGAACAATT TTCACGATGGATATCTAAAGAAGGGCCACCGTATCGTGATATTACCATAG TTGGGCACGTTGTGGCCGGAGGGCTTACGGGGGCCATATCATGGGGATGC GCTTTTCccgctgacgtcatcaaatgtCGGATTCAAGTAGATTACGAGGG GCGATATAACGGTTTTATTGACTGTGTTCGCAAATCTTATAAAGAGGAAG GTCCGGCGCTTTTCCGGCGTGGTTTTTGGCCCTGTGTTTTGAGAGGGTTT CCAATGAACGCAGCAATCTTTAGTATTTATCATTATATGATCCGTGTTTA TGAAGACCACGATATGGCAGATAGGATTGTAACAAAGTTTTTGTACGTGG ATTGATTGAATGCAATAGTGTGATGTTTTTGAATGTTAACTTCATGTTCA TGCATACGCAATACATCTTCGAAAACTTTTAAGGCCTGGATCCGCCATAA CTACTGAAACACCCCTGTATCACAGACTGGAAAATGAACTTTGATTTCAT ATCCCAAAATTCATTTCAAAATTCAATTGGACGAAAACTTGCATTCCGAA ACCATCCCCACTGGAACAATAGAATTTCTATCCTCATTGGGATTTCGATA TAAATTTTTATCCCCACTGAGGGAAAACTTCCACCGGGTCTGTGAGACAG GGATGAAATGAGAGGCCCTCAGACTTATCATAACTTGAAATATTAAATAA GCAAGTTAGACGTCGAAAAGTGAATCCATTTCTTAAAATTTGTTCATTTT AATTTGAATACATCTTTTGGACGTATATCAAGAAAATTCCTTTCGTCCCG CTCGTATTAATTGGAGTCGTTTACGTACAAGAAACTACTGTTGAATTTTA ACTAAATATTTTTAATATATACTTTAGATAGGAAAACACAAAAATTATAT AATATTTTTTACAAATCATCCTTGTTCATTTATAAACGTTTTTTATTGAA AATTCTTTCTCAGCTAGAACCACG Run BLAST on NCBI transcript from alignment at sc0000215:341838..348524- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00015694 ID=TCONS_00015694|Name=TCONS_00015694|organism=Clytia hemisphaerica|type=transcript|length=6687bp|location=Sequence derived from alignment at sc0000215:341838..348524- (Clytia hemisphaerica) ATTTGATGTTAATGCGAATTCACAGAGTGAAATAAAGTTGTAGAAAGTTA
TTTCACTTCTTTTCAAATTTGACCCCAGTTATTGACTTTTTATACTGTAA
ATATTGACCGTTTTATTTCAATCACATATCTTAAAACGATTTTATTCATG
GAAAAAGGTTTTGAGAGCTAAAAACTATTTTAAGACACAAATTTTTAGCT
ATATGTAGTTTTGCTGAAACATAATGTGATGTTTAATGTGCGTTTTTTTG
TCTTAAATTATATTTTAAAGTTTTTACTGTTTATATACGTAAAAAGAGAA
ATGCTGAGATTATCAACCACAAAAGTATGATAGGTATTTTTAATTGGAAT
GCCTTCAATAATTTTTAAACTGTTTTTCCATTTAGACTTGTCTGAAGGCT
AGTATATACTATCATGTAGAGAACATACTCGACTTGGTTTTTGGAAGGCT
CCCTCAACAGATGGAATGACTAAAAAGGAGAAGGCAATCGAAAATATCGA
TGCCTTCACACATTTTGTAGCTGGTTGGGTCTCAGGTACTTATACTTATA
CACTTTTGGAGATCAAGAAATTAATGATGAAAAAAAAATTATATTATTAG
ACTTTGTTTACACCTCTGTATCAAAGGCAGCTAATTTCGTGACTTGAAGT
CGACCAATAGAAATTTGTTTTCGTTTTAAAACAATTTGGAACGTGTGACT
ACTGTTTCAGCAATTGNTTTTAACCAAATTGAAATTTGTTTTCGTTTTAA
TACAATTTGGAGCGTGTGACTACTGTTTCAGCAATTGCTATTATTCATCA
TAAGTAGGTCTATTAAGCCAAGTAGTCTGTCTGCCTGCCTATAATAGAGC
TATTCTAGGTTTGATACCCTATTTTTACTAATTTGAAAATTTGCAGGCAG
GCAGACTACTTGGCTTAATAGACCTACTTATGATAGTTATAATTATCACT
ATTAATTATAGATACTTATGATAGGTCAAGACCTACAATTTGCTTAAAAT
TTTACACTAAGATTTATTTTAAAGAGGACTTTGCACCTTTGGATGATAAT
CAGAGAGTAAATCCAATATTTTGTTGTCACAGGTTGTGCGGGCGTGTTGG
TGAGTCATCCTTTGGACACAGTGAAAGTTCGTTTACAAACGCAAGGCGTA
TCTGCAATACAACAACAGTATCGGGGTACATGGCATTGTCTATCTGAAAC
CATCAAAAATGAAAAGGTAGTTCTCATCATTCTTCACTTCGATTATGTAA
AAACTTTTTTTCTGATTGCATTCAAAAATAGAACCCCAAAAAGTGAGGTT
TTCAATCACAGCCACTTTTTAGCCCACAACGTTGATATTCTTGTGGCTGC
TGTGTAGTACAAAATTCTATAAAATAAGGAAATTGACGAGCTTTCCAAAA
ATGTGGCTCCCTTTGAAGTTGAGTGATTCAGTCTTGAAATATAAGATGGC
AAAGTGAGGGCAGGTTTTGTGGCNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAT
TTTGGTTCCATTTTTGATATTTTGTGGATAAACCCTTTTGCTACGAGTTT
CATCTGACTGAAAAATATGCATTCCTCTTGTTGTATTTTTCTTGGGCTAA
ATTAAAGCCCCTTTTGTACTTTCTACTCATTCTGTTTAGGTTTATGGGTT
GTTCAAAGGTATGTCGTCACCGCTCCTGGGAACTGCTCTTTGGAATGCTG
TTATCTTCGGTACCTATGGCAACACCATACGCTGGTTGGCTGGTGATAGC
CTAGAAGAACAGCATCGGATGAGTAATGTTGTAATCGCTAGTCTAGCGTC
AGGTTTCACTCAAACTTTTGTTATTACACCTCTGGAGCTCACCAAAACGA
GGCTACAAATTCAAACATCGCAGAAAAATCAAGTTTATAAAGGTTACTTT
TTATTGAATTATGGACACTTTAATTTGTTGACAATTTTTATGTAGTCTTT
TTGCTATATTAAAAAGCTATATATCATATGCCATTGGAAAGATTTCCCAG
AAGATAGAATGATATAAAAGATTAAAGAATTTTGCAAAGTTGACAAATGA
AGAAGAAAAGGGAAGATGAAAAAATGAAGTTTTTTCCTATTTTTCTACTG
GTACCAAAATCATTACATCAGACCTTTCAGAATTATTGAACCGTGCTGAT
TTCAAATCCGTATTTCTTGTATCTTCCTTAGATAAAAAGTTACAGCCCTA
TGAAGTAGGCCTAAAACGGACAAAAATGACCAAAAATTAACACATTTTAC
AGTGCTGTTTTTTATTTGTGTTTTTTATTATTTTCAGGTTTGATTGATTG
TTGTCGACAGATCTATCGCCAACAAGGTTTTTTCGGACTCTTCAAAGGGT
TCAATGCAACGTTCATTCGAGATGCAATCGGTTTCACTGCGTTCTTTGGA
ATTTTCGAACAATTTTCACGATGGATATCTAAAGAAGGGCCACCGTATCG
TGATATTACCATAGTTGGGCACGTTGTGGCCGGAGGGCTTACGGGTGCCA
TATCATGGGGATGCGCTTTTCCCGCTGACGTCATCAAATGTCGGATTCAA
GTAGATTACGAGGGGCGATATAACGGTTTTATTGACTGTGTTCGCAAATC
TTATAAAGAGGAAGGTCCGGCGCTTTTCCGGCGTGGTTTTTGGCCCTGTG
TTTTGAGAGGGTTTCCAATGAACGCAGCAATCTTTAGTATTTATCATTAT
ATGATCCGTGTTTATGAAGACCACGATATGGCAGATAGGATTGTAACAAA
GTTTTTGTACGTGGATTGATTGAATGCAATAGTGTGACCTTTTTGAATGT
TAACTTCATGTTCATGCATACGCAATACATCTTCGAAAACTTTTAAGGCC
TGGATCCGCCATAACTACTGAAACACCCCTGTATCACAGACTGGAAAATG
AACTTTGATTTCATATCCCAAAATTCATTTCAAAATTCAATTGGACGAAA
ACTTGCATTCCGAAACCATCCCCACTGGAACAATAGAATTTCTATCCTCA
TTGGGATTTCGATATAAATTTTTATCCCCACTGAGGGAAAACTTCCACCG
GGTCTGTGAGACAGGGATGAAATGAGAGGCCCTCAGACTTATCATAACTT
GAAATATTAAATAAGCAAGTTAGACGTCGAAAAGTGAATCCATTTCTTAA
AATTTGTTCATTTTAATTTGAATACATCTTTTGGACGTATATCAAGAAAA
TTCCTTTCGTCCCGCTCGTATTAATTGGAGTCGTTTACGTACAAGAAACT
ACTGTTGAATTTTAACTAAATATTTTTAATATATACTTTAGATAGGAAAA
CACAAAAATTATATAATATTTTTTACAAATCATCCTTGTTCATTTATAAA
CGTTTTTTATTGAAAATTCTTTCTCAGCTAGAACCACGACAAATATTTTT
CTTTATATACTTTTCCGTGTCTTCTTTGGTTCGAAAGACCAGGAAAGTAT
GAACCAATGTTTATCCCACGGCTGCTAGACCTGTCAAAATTTTGAAAATC
GCTCACTCACTATGGTAAGAAAGGTCCGAATTTTATAGGTGCCAATTTTT
TTTTTTCGGACACCAGTTTATTTTACTTTGAAATTTCGTTCAGTGATAGG
CTAATAGGAAGCACAAACTCAATAGTTGATGCCAATAGTTTATTGTCGCC
TTGAAAATATATTTTATCTGCGTGTTTGCGGCTTTTGTTTGATATTCAGA
AAACTCCCACTCTCTTATCCTATCACCCGCAACAAATTACTTTCATCTTT
TCGAAAATAAACACATAATTCTCTTGCGGTATATACACCATCAACACTAA
CGGTCAATATTCTGTTTTGGTTTTTCTGGTTCGCTGAAAACCCACACTTG
ACTATAATTGCGATTCGCCCATTAAAATATCATTAAAATATCATTAAATT
GTTCAGAGTCCTTAGGAAGGTTCTGTGGTAAGTGTTGTGGTTTCAATAGC
GTCAACATCAAAAAGACTTTAAGAAAGGTATATTAATGAAAACATAAACA
CACCTTCACACAAACATATTTTTCAGTAACAGAGTTTTTACAAAAGTGAC
GAAGTTTTCCACGACGAAAAATCTTACTGGTCAACTTCAAGGGGAGTTAC
GTCAAAAGAAATTTTCACTACAGTATATGGCCCCCAAAACGGAGACGGGC
CCAAAAACGGAGGTCGTCGTTAAAATGAGGATTCTGACTTGTAGATTTAT
CAGATTTAAACGATTTTTGTTTCTTTTGAAAGAATGATGGTTATACTAAA
AAATTTTTGAGACAGATTCAAAATAACATATTTGCGTCTGAAGGAGATAT
TTTAACACCAAAATTAGATAAAAATTGCATATAACTCACTCTAGCTCCTT
GGATATTGAAAATAAGTTATGAAAATGGGGNAATCGCTAGTCTAGCGTCA
GGTTTCACTCAAACTTTTGTTATTACACCTCTGGAGCTCACCAAAACGAG
GCTACAAATTCAAACATCGCAGAAAAATCAAGTTTATAAAGGTTACTTTT
TATTGAATTATGGACACTTTAATTTGTTGACAATTTTTATGTAGTCTTTT
TGCTATATTAAAAAGCTATATATCATATGCCATTGGAAAGATTTCCCAGA
AGATAGAATGATATAAAAGATTAAAGAATTTTGCAAAGTTGACAAATGAA
GAAGAAAAGGGAAGATGAAAAAATGAAGTTTTTTCCTATTTTTCTACTGG
TACCAAAATCATTACATCAGACCTTTCAGAATTATTGAACCGTGCTGATT
TCAAATCCGTATTTCTTGTATCTTCCTTAGATAAAAAGTTACAGCCCTAT
GAAGTAGGCCTAAAACGGACAAAAATGACCAAAAATTAACACATTTTACA
GTGCTGTTTTTTATTTGTGTTTTTTATTATTTTCAGGTTTGATTGATTGT
TGTCGACAGATCTATCGCCAACAAGGTTTTTTCGGACTCTTCAAAGGGTT
CAATGCAACGTTCATTCGAGATGCCATCGGTTTCACTGCGTTCTTTGGAA
TTTTCGAACAATTTTCACGATGGATATCTAAAGAAGGGCCACCGTATCGT
GATATTACCATAGTTGGGCACGTTGTGGCCGGAGGGCTTACGGGGGCCAT
ATCATGGGGATGCGCTTTTCCCGCTGACGTCATCAAATGTCGGATTCAAG
TAGATTACGAGGGGCGATATAACGGTTTTATTGACTGTGTTCGCAAATCT
TATAAAGAGGAAGGTCCGGCGCTTTTCCGGCGTGGTTTTTGGCCCTGTGT
TTTGAGAGGGTTTCCAATGAACGCAGCAATCTTTAGTATTTATCATTATA
TGATCCGTGTTTATGAAGACCACGATATGGCAGATAGGATTGTAACAAAG
TTTTTGTACGTGGATTGATTGAATGCAATAGTGTGATGTTTTTGAATGTT
AACTTCATGTTCATGCATACGCAATACATCTTCGAAAACTTTTAAGGCCT
GGATCCGCCATAACTACTGAAACACCCCTGTATCACAGACTGGAAAATGA
ACTTTGATTTCATATCCCAAAATTCATTTCAAAATTCAATTGGACGAAAA
CTTGCATTCCGAAACCATCCCCACTGGAACAATAGAATTTCTATCCTCAT
TGGGATTTCGATATAAATTTTTATCCCCACTGAGGGAAAACTTCCACCGG
GTCTGTGAGACAGGGATGAAATGAGAGGCCCTCAGACTTATCATAACTTG
AAATATTAAATAAGCAAGTTAGACGTCGAAAAGTGAATCCATTTCTTAAA
ATTTGTTCATTTTAATTTGAATACATCTTTTGGACGTATATCAAGAAAAT
TCCTTTCGTCCCGCTCGTATTAATTGGAGTCGTTTACGTACAAGAAACTA
CTGTTGAATTTTAACTAAATATTTTTAATATATACTTTAGATAGGAAAAC
ACAAAAATTATATAATATTTTTTACAAATCATCCTTGTTCATTTATAAAC
GTTTTTTATTGAAAATTCTTTCTCAGCTAGAACCACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00015694-exon-sc0000215-1575043694:348489..348524 | TCONS_00015694-exon-sc0000215-1575043694:348489..348524 | Clytia hemisphaerica | exon |
TCONS_00015694-exon-sc0000215-1575043694:347990..348139 | TCONS_00015694-exon-sc0000215-1575043694:347990..348139 | Clytia hemisphaerica | exon |
TCONS_00015694-exon-sc0000215-1575043694:347309..347442 | TCONS_00015694-exon-sc0000215-1575043694:347309..347442 | Clytia hemisphaerica | exon |
TCONS_00015694-exon-sc0000215-1575043694:345933..346185 | TCONS_00015694-exon-sc0000215-1575043694:345933..346185 | Clytia hemisphaerica | exon |
TCONS_00015694-exon-sc0000215-1575043694:341838..342938 | TCONS_00015694-exon-sc0000215-1575043694:341838..342938 | Clytia hemisphaerica | exon |
TCONS_00015694-exon-sc0000215-1510915933:348489..348524 | TCONS_00015694-exon-sc0000215-1510915933:348489..348524 | Clytia hemisphaerica | exon |
TCONS_00015694-exon-sc0000215-1510915933:347990..348139 | TCONS_00015694-exon-sc0000215-1510915933:347990..348139 | Clytia hemisphaerica | exon |
TCONS_00015694-exon-sc0000215-1510915933:347309..347442 | TCONS_00015694-exon-sc0000215-1510915933:347309..347442 | Clytia hemisphaerica | exon |
TCONS_00015694-exon-sc0000215-1510915933:345933..346185 | TCONS_00015694-exon-sc0000215-1510915933:345933..346185 | Clytia hemisphaerica | exon |
TCONS_00015694-exon-sc0000215-1510915933:341838..342938 | TCONS_00015694-exon-sc0000215-1510915933:341838..342938 | Clytia hemisphaerica | exon |
TCONS_00015694-exon-sc0000215-1491911889:348489..348524 | TCONS_00015694-exon-sc0000215-1491911889:348489..348524 | Clytia hemisphaerica | exon |
TCONS_00015694-exon-sc0000215-1491911889:347990..348139 | TCONS_00015694-exon-sc0000215-1491911889:347990..348139 | Clytia hemisphaerica | exon |
TCONS_00015694-exon-sc0000215-1491911889:347309..347442 | TCONS_00015694-exon-sc0000215-1491911889:347309..347442 | Clytia hemisphaerica | exon |
TCONS_00015694-exon-sc0000215-1491911889:345933..346185 | TCONS_00015694-exon-sc0000215-1491911889:345933..346185 | Clytia hemisphaerica | exon |
TCONS_00015694-exon-sc0000215-1491911889:341838..342938 | TCONS_00015694-exon-sc0000215-1491911889:341838..342938 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000215 | supercontig | sc0000215:341838..348524 - |
Blast
BLAST of TCONS_00015694 vs. Swiss-Prot (Human)
Match: MCATL (Mitochondrial basic amino acids transporter OS=Homo sapiens GN=SLC25A29 PE=1 SV=2) HSP 1 Score: 223.016 bits (567), Expect = 3.292e-67 Identity = 117/273 (42.86%), Postives = 160/273 (58.61%), Query Frame = 3
Query: 165 FVAGWVSGCAGVLVSHPLDTVKVRLQTQGVSAIQQQYRGTWHCLSETIKNEKVYGLFKGMSSPLLGTALWNAVIFGTYGNTIRWLAGDSLEEQHRMSNVVIASLASGFTQTFVITPLELTKTRLQIQTSQKNQVYKGLIDCCRQIYRQQGFFGLFKGFNATFIRDAIGFTAFFGIFEQFSRWISKEGPPYRDITIVGHVVAGGLTGAISWGCAFPADVIKCRIQVD---YEGRYNGFIDCVRKSYKEEGPALFRRGFWPCVLRGFPMNAAIFS 974
F+AG G AGVLV HP DTVKVRLQ Q V + QYRGT HC IK E V GL+KG+ SPL+G NA++FG GNT+R L DS Q +A A+G Q + P+EL KTRLQ+Q + + YKG +DC QIY +G G+ +G +T +R+ F +F ++ +R + E P + + ++AGG +G +SW +P DV+K R+Q D RY G +DCV +SY+ EG +F RG +LR FP+NAA F+
Sbjct: 5 FLAGCAGGVAGVLVGHPFDTVKVRLQVQSVE--KPQYRGTLHCFKSIIKQESVLGLYKGLGSPLMGLTFINALVFGVQGNTLRALGHDSPLNQF------LAGAAAGAIQCVICCPMELAKTRLQLQDAGPARTYKGSLDCLAQIYGHEGLRGVNRGMVSTLLRETPSFGVYFLTYDALTRALGCE--PGDRLLVPKLLLAGGTSGIVSWLSTYPVDVVKSRLQADGLRGAPRYRGILDCVHQSYRAEGWRVFTRGLASTLLRAFPVNAATFA 267
The following BLAST results are available for this feature:
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