TCONS_00015692 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015692
Unique NameTCONS_00015692
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1686

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015692 ID=TCONS_00015692|Name=TCONS_00015692|organism=Clytia hemisphaerica|type=transcript|length=1686bp
GTTTTATTTCAATCACATATCTTAAAACGATTTTATTCATGGAAAAAGAC
TTGTCTGAAGGCTAGTATATACTATCATGTAGAGAACATACTCGACTTGG
TTTTTGGAAGGCTCCCTCAACAGATGGAATGACTAAAAAGGAGAAGGCAA
TCGAAAATATCGATGCCTTCACACATTTTGTAGCTGGTTGGGTCTCAGGT
TGTGCGGGCGTGTTGGTGAGTCATCCTTTGGACACAGTGAAAGTTCGTTT
ACAAACGCAAGGCGTATCTGCAATACAACAACAGTATCGGGGTACATGGC
ATTGTCTATCTGAAAccatcaaaaatgaaaagGTTTATGGGTTGTTCAAA
GGTATGTCGTCACCGCTCCTGGGAACTGCTCTTTGGAATGCTGTTATCTT
CGGTACCTATGGCAACACCATACGCTGGTTGGCTGGTGATAGCCTAGAAG
AACAGCATCGGATGAGTAATGTTGTAATCGCTAGTCTAGCGTCAGGTTTC
ACTCAAACTTTTGTTATTACACCTCTGGAgctcaccaaaacgaggctaca
AATTCAAACATCGcagaaaaatcaagtttataAAGgtttgattgattgtt
gtCGACAGATCTATCGCCAACAAGGTTTTTTCGGACTCTTCAAAGGGTTC
AATGCAACGTTCATTCGAGATGCCATCGGTTTCACTGCGTTCTTTGGAAT
TTTCGAACAATTTTCACGATGGATATCTAAAGAAGGGCCACCGTATCGTG
ATATTACCATAGTTGGGCACGTTGTGGCCGGAGGGCTTACGGGGGCCATA
TCATGGGGATGCGCTTTTCccgctgacgtcatcaaatgtCGGATTCAAGT
AGATTACGAGGGGCGATATAACGGTTTTATTGACTGTGTTCGCAAATCTT
ATAAAGAGGAAGGTCCGGCGCTTTTCCGGCGTGGTTTTTGGCCCTGTGTT
TTGAGAGGGTTTCCAATGAACGCAGCAATCTTTAGTATTTATCATTATAT
GATCCGTGTTTATGAAGACCACGATATGGCAGATAGGATTGTAACAAAGT
TTTTGTACGTGGATTGATTGAATGCAATAGTGTGATGTTTTTGAATGTTA
ACTTCATGTTCATGCATACGCAATACATCTTCGAAAACTTTTAAGGCCTG
GATCCGCCATAACTACTGAAACACCCCTGTATCACAGACTGGAAAATGAA
CTTTGATTTCATATCCCAAAATTCATTTCAAAATTCAATTGGACGAAAAC
TTGCATTCCGAAACCATCCCCACTGGAACAATAGAATTTCTATCCTCATT
GGGATTTCGATATAAATTTTTATCCCCACTGAGGGAAAACTTCCACCGGG
TCTGTGAGACAGGGATGAAATGAGAGGCCCTCAGACTTATCATAACTTGA
AATATTAAATAAGCAAGTTAGACGTCGAAAAGTGAATCCATTTCTTAAAA
TTTGTTCATTTTAATTTGAATACATCTTTTGGACGTATATCAAGAAAATT
CCTTTCGTCCCGCTCGTATTAATTGGAGTCGTTTACGTACAAGAAACTAC
TGTTGAATTTTAACTAAATATTTTTAATATATACTTTAGATAGGAAAACA
CAAAAATTATATAATATTTTTTACAAATCATCCTTGTTCATTTATAAACG
TTTTTTATTGAAAATTCTTTCTCAGCTAGAACCACG
Run BLAST on NCBI

protein sequence of TCONS_00015692-protein

>TCONS_00015692-protein ID=TCONS_00015692-protein|Name=TCONS_00015692-protein|organism=Clytia hemisphaerica|type=polypeptide|length=312bp
MTKKEKAIENIDAFTHFVAGWVSGCAGVLVSHPLDTVKVRLQTQGVSAIQ
QQYRGTWHCLSETIKNEKVYGLFKGMSSPLLGTALWNAVIFGTYGNTIRW
LAGDSLEEQHRMSNVVIASLASGFTQTFVITPLELTKTRLQIQTSQKNQV
YKGLIDCCRQIYRQQGFFGLFKGFNATFIRDAIGFTAFFGIFEQFSRWIS
KEGPPYRDITIVGHVVAGGLTGAISWGCAFPADVIKCRIQVDYEGRYNGF
IDCVRKSYKEEGPALFRRGFWPCVLRGFPMNAAIFSIYHYMIRVYEDHDM
ADRIVTKFLYVD
Run BLAST on NCBI

transcript from alignment at sc0000215:341838..348415-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015692 ID=TCONS_00015692|Name=TCONS_00015692|organism=Clytia hemisphaerica|type=transcript|length=6578bp|location=Sequence derived from alignment at sc0000215:341838..348415- (Clytia hemisphaerica)
GTTTTATTTCAATCACATATCTTAAAACGATTTTATTCATGGAAAAAGGT
TTTGAGAGCTAAAAACTATTTTAAGACACAAATTTTTAGCTATATGTAGT
TTTGCTGAAACATAATGTGATGTTTAATGTGCGTTTTTTTGTCTTAAATT
ATATTTTAAAGTTTTTACTGTTTATATACGTAAAAAGAGAAATGCTGAGA
TTATCAACCACAAAAGTATGATAGGTATTTTTAATTGGAATGCCTTCAAT
AATTTTTAAACTGTTTTTCCATTTAGACTTGTCTGAAGGCTAGTATATAC
TATCATGTAGAGAACATACTCGACTTGGTTTTTGGAAGGCTCCCTCAACA
GATGGAATGACTAAAAAGGAGAAGGCAATCGAAAATATCGATGCCTTCAC
ACATTTTGTAGCTGGTTGGGTCTCAGGTACTTATACTTATACACTTTTGG
AGATCAAGAAATTAATGATGAAAAAAAAATTATATTATTAGACTTTGTTT
ACACCTCTGTATCAAAGGCAGCTAATTTCGTGACTTGAAGTCGACCAATA
GAAATTTGTTTTCGTTTTAAAACAATTTGGAACGTGTGACTACTGTTTCA
GCAATTGNTTTTAACCAAATTGAAATTTGTTTTCGTTTTAATACAATTTG
GAGCGTGTGACTACTGTTTCAGCAATTGCTATTATTCATCATAAGTAGGT
CTATTAAGCCAAGTAGTCTGTCTGCCTGCCTATAATAGAGCTATTCTAGG
TTTGATACCCTATTTTTACTAATTTGAAAATTTGCAGGCAGGCAGACTAC
TTGGCTTAATAGACCTACTTATGATAGTTATAATTATCACTATTAATTAT
AGATACTTATGATAGGTCAAGACCTACAATTTGCTTAAAATTTTACACTA
AGATTTATTTTAAAGAGGACTTTGCACCTTTGGATGATAATCAGAGAGTA
AATCCAATATTTTGTTGTCACAGGTTGTGCGGGCGTGTTGGTGAGTCATC
CTTTGGACACAGTGAAAGTTCGTTTACAAACGCAAGGCGTATCTGCAATA
CAACAACAGTATCGGGGTACATGGCATTGTCTATCTGAAACCATCAAAAA
TGAAAAGGTAGTTCTCATCATTCTTCACTTCGATTATGTAAAAACTTTTT
TTCTGATTGCATTCAAAAATAGAACCCCAAAAAGTGAGGTTTTCAATCAC
AGCCACTTTTTAGCCCACAACGTTGATATTCTTGTGGCTGCTGTGTAGTA
CAAAATTCTATAAAATAAGGAAATTGACGAGCTTTCCAAAAATGTGGCTC
CCTTTGAAGTTGAGTGATTCAGTCTTGAAATATAAGATGGCAAAGTGAGG
GCAGGTTTTGTGGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTTGGTTCC
ATTTTTGATATTTTGTGGATAAACCCTTTTGCTACGAGTTTCATCTGACT
GAAAAATATGCATTCCTCTTGTTGTATTTTTCTTGGGCTAAATTAAAGCC
CCTTTTGTACTTTCTACTCATTCTGTTTAGGTTTATGGGTTGTTCAAAGG
TATGTCGTCACCGCTCCTGGGAACTGCTCTTTGGAATGCTGTTATCTTCG
GTACCTATGGCAACACCATACGCTGGTTGGCTGGTGATAGCCTAGAAGAA
CAGCATCGGATGAGTAATGTTGTAATCGCTAGTCTAGCGTCAGGTTTCAC
TCAAACTTTTGTTATTACACCTCTGGAGCTCACCAAAACGAGGCTACAAA
TTCAAACATCGCAGAAAAATCAAGTTTATAAAGGTTACTTTTTATTGAAT
TATGGACACTTTAATTTGTTGACAATTTTTATGTAGTCTTTTTGCTATAT
TAAAAAGCTATATATCATATGCCATTGGAAAGATTTCCCAGAAGATAGAA
TGATATAAAAGATTAAAGAATTTTGCAAAGTTGACAAATGAAGAAGAAAA
GGGAAGATGAAAAAATGAAGTTTTTTCCTATTTTTCTACTGGTACCAAAA
TCATTACATCAGACCTTTCAGAATTATTGAACCGTGCTGATTTCAAATCC
GTATTTCTTGTATCTTCCTTAGATAAAAAGTTACAGCCCTATGAAGTAGG
CCTAAAACGGACAAAAATGACCAAAAATTAACACATTTTACAGTGCTGTT
TTTTATTTGTGTTTTTTATTATTTTCAGGTTTGATTGATTGTTGTCGACA
GATCTATCGCCAACAAGGTTTTTTCGGACTCTTCAAAGGGTTCAATGCAA
CGTTCATTCGAGATGCAATCGGTTTCACTGCGTTCTTTGGAATTTTCGAA
CAATTTTCACGATGGATATCTAAAGAAGGGCCACCGTATCGTGATATTAC
CATAGTTGGGCACGTTGTGGCCGGAGGGCTTACGGGTGCCATATCATGGG
GATGCGCTTTTCCCGCTGACGTCATCAAATGTCGGATTCAAGTAGATTAC
GAGGGGCGATATAACGGTTTTATTGACTGTGTTCGCAAATCTTATAAAGA
GGAAGGTCCGGCGCTTTTCCGGCGTGGTTTTTGGCCCTGTGTTTTGAGAG
GGTTTCCAATGAACGCAGCAATCTTTAGTATTTATCATTATATGATCCGT
GTTTATGAAGACCACGATATGGCAGATAGGATTGTAACAAAGTTTTTGTA
CGTGGATTGATTGAATGCAATAGTGTGACCTTTTTGAATGTTAACTTCAT
GTTCATGCATACGCAATACATCTTCGAAAACTTTTAAGGCCTGGATCCGC
CATAACTACTGAAACACCCCTGTATCACAGACTGGAAAATGAACTTTGAT
TTCATATCCCAAAATTCATTTCAAAATTCAATTGGACGAAAACTTGCATT
CCGAAACCATCCCCACTGGAACAATAGAATTTCTATCCTCATTGGGATTT
CGATATAAATTTTTATCCCCACTGAGGGAAAACTTCCACCGGGTCTGTGA
GACAGGGATGAAATGAGAGGCCCTCAGACTTATCATAACTTGAAATATTA
AATAAGCAAGTTAGACGTCGAAAAGTGAATCCATTTCTTAAAATTTGTTC
ATTTTAATTTGAATACATCTTTTGGACGTATATCAAGAAAATTCCTTTCG
TCCCGCTCGTATTAATTGGAGTCGTTTACGTACAAGAAACTACTGTTGAA
TTTTAACTAAATATTTTTAATATATACTTTAGATAGGAAAACACAAAAAT
TATATAATATTTTTTACAAATCATCCTTGTTCATTTATAAACGTTTTTTA
TTGAAAATTCTTTCTCAGCTAGAACCACGACAAATATTTTTCTTTATATA
CTTTTCCGTGTCTTCTTTGGTTCGAAAGACCAGGAAAGTATGAACCAATG
TTTATCCCACGGCTGCTAGACCTGTCAAAATTTTGAAAATCGCTCACTCA
CTATGGTAAGAAAGGTCCGAATTTTATAGGTGCCAATTTTTTTTTTTCGG
ACACCAGTTTATTTTACTTTGAAATTTCGTTCAGTGATAGGCTAATAGGA
AGCACAAACTCAATAGTTGATGCCAATAGTTTATTGTCGCCTTGAAAATA
TATTTTATCTGCGTGTTTGCGGCTTTTGTTTGATATTCAGAAAACTCCCA
CTCTCTTATCCTATCACCCGCAACAAATTACTTTCATCTTTTCGAAAATA
AACACATAATTCTCTTGCGGTATATACACCATCAACACTAACGGTCAATA
TTCTGTTTTGGTTTTTCTGGTTCGCTGAAAACCCACACTTGACTATAATT
GCGATTCGCCCATTAAAATATCATTAAAATATCATTAAATTGTTCAGAGT
CCTTAGGAAGGTTCTGTGGTAAGTGTTGTGGTTTCAATAGCGTCAACATC
AAAAAGACTTTAAGAAAGGTATATTAATGAAAACATAAACACACCTTCAC
ACAAACATATTTTTCAGTAACAGAGTTTTTACAAAAGTGACGAAGTTTTC
CACGACGAAAAATCTTACTGGTCAACTTCAAGGGGAGTTACGTCAAAAGA
AATTTTCACTACAGTATATGGCCCCCAAAACGGAGACGGGCCCAAAAACG
GAGGTCGTCGTTAAAATGAGGATTCTGACTTGTAGATTTATCAGATTTAA
ACGATTTTTGTTTCTTTTGAAAGAATGATGGTTATACTAAAAAATTTTTG
AGACAGATTCAAAATAACATATTTGCGTCTGAAGGAGATATTTTAACACC
AAAATTAGATAAAAATTGCATATAACTCACTCTAGCTCCTTGGATATTGA
AAATAAGTTATGAAAATGGGGNAATCGCTAGTCTAGCGTCAGGTTTCACT
CAAACTTTTGTTATTACACCTCTGGAGCTCACCAAAACGAGGCTACAAAT
TCAAACATCGCAGAAAAATCAAGTTTATAAAGGTTACTTTTTATTGAATT
ATGGACACTTTAATTTGTTGACAATTTTTATGTAGTCTTTTTGCTATATT
AAAAAGCTATATATCATATGCCATTGGAAAGATTTCCCAGAAGATAGAAT
GATATAAAAGATTAAAGAATTTTGCAAAGTTGACAAATGAAGAAGAAAAG
GGAAGATGAAAAAATGAAGTTTTTTCCTATTTTTCTACTGGTACCAAAAT
CATTACATCAGACCTTTCAGAATTATTGAACCGTGCTGATTTCAAATCCG
TATTTCTTGTATCTTCCTTAGATAAAAAGTTACAGCCCTATGAAGTAGGC
CTAAAACGGACAAAAATGACCAAAAATTAACACATTTTACAGTGCTGTTT
TTTATTTGTGTTTTTTATTATTTTCAGGTTTGATTGATTGTTGTCGACAG
ATCTATCGCCAACAAGGTTTTTTCGGACTCTTCAAAGGGTTCAATGCAAC
GTTCATTCGAGATGCCATCGGTTTCACTGCGTTCTTTGGAATTTTCGAAC
AATTTTCACGATGGATATCTAAAGAAGGGCCACCGTATCGTGATATTACC
ATAGTTGGGCACGTTGTGGCCGGAGGGCTTACGGGGGCCATATCATGGGG
ATGCGCTTTTCCCGCTGACGTCATCAAATGTCGGATTCAAGTAGATTACG
AGGGGCGATATAACGGTTTTATTGACTGTGTTCGCAAATCTTATAAAGAG
GAAGGTCCGGCGCTTTTCCGGCGTGGTTTTTGGCCCTGTGTTTTGAGAGG
GTTTCCAATGAACGCAGCAATCTTTAGTATTTATCATTATATGATCCGTG
TTTATGAAGACCACGATATGGCAGATAGGATTGTAACAAAGTTTTTGTAC
GTGGATTGATTGAATGCAATAGTGTGATGTTTTTGAATGTTAACTTCATG
TTCATGCATACGCAATACATCTTCGAAAACTTTTAAGGCCTGGATCCGCC
ATAACTACTGAAACACCCCTGTATCACAGACTGGAAAATGAACTTTGATT
TCATATCCCAAAATTCATTTCAAAATTCAATTGGACGAAAACTTGCATTC
CGAAACCATCCCCACTGGAACAATAGAATTTCTATCCTCATTGGGATTTC
GATATAAATTTTTATCCCCACTGAGGGAAAACTTCCACCGGGTCTGTGAG
ACAGGGATGAAATGAGAGGCCCTCAGACTTATCATAACTTGAAATATTAA
ATAAGCAAGTTAGACGTCGAAAAGTGAATCCATTTCTTAAAATTTGTTCA
TTTTAATTTGAATACATCTTTTGGACGTATATCAAGAAAATTCCTTTCGT
CCCGCTCGTATTAATTGGAGTCGTTTACGTACAAGAAACTACTGTTGAAT
TTTAACTAAATATTTTTAATATATACTTTAGATAGGAAAACACAAAAATT
ATATAATATTTTTTACAAATCATCCTTGTTCATTTATAAACGTTTTTTAT
TGAAAATTCTTTCTCAGCTAGAACCACG

Coding sequence (CDS) from alignment at sc0000215:341838..348415-

>TCONS_00015692 ID=TCONS_00015692|Name=TCONS_00015692|organism=Clytia hemisphaerica|type=CDS|length=4695bp|location=Sequence derived from alignment at sc0000215:341838..348415- (Clytia hemisphaerica)
GTTTGATTGATTGTTGTCGACAGATCTATCGCCAACAAGGTTTTTTCGGA
CTCTTCAAAGGGTTCAATGCAACGTTCATTCGAGATGCCATCGGTTTCAC
TGCGTTCTTTGGAATTTTCGAACAATTTTCACGATGGATATCTAAAGAAG
GGCCACCGTATCGTGATATTACCATAGTTGGGCACGTTGTGGCCGGAGGG
CTTACGGGGGCCATATCATGGGGATGCGCTTTTCCCGCTGACGTCATCAA
ATGTCGGATTCAAGTAGATTACGAGGGGCGATATAACGGTTTTATTGACT
GTGTTCGCAAATCTTATAAAGAGGAAGGTCCGGCGCTTTTCCGGCGTGGT
TTTTGGCCCTGTGTTTTGAGAGGGTTTCCAATGAACGCAGCAATCTTTAG
TATTTATCATTATATGATCCGTGTTTATGAAGACCACGATATGGCAGATA
GGATTGTAACAAAGTTTTTGTACGTGGATTGAATCGCAGAAAAATCAAGT
TTATAAAGGTTTATGGGTTGTTCAAAGGTATGTCGTCACCGCTCCTGGGA
ACTGCTCTTTGGAATGCTGTTATCTTCGGTACCTATGGCAACACCATACG
CTGGTTGGCTGGTGATAGCCTAGAAGAACAGCATCGGATGAGTAATGTTG
TAATCGCTAGTCTAGCGTCAGGTTTCACTCAAACTTTTGTTATTACACCT
CTGGAGCTCACCAAAACGAGGCTACAAATTCAAACGTTGTGCGGGCGTGT
TGGTGAGTCATCCTTTGGACACAGTGAAAGTTCGTTTACAAACGCAAGGC
GTATCTGCAATACAACAACAGTATCGGGGTACATGGCATTGTCTATCTGA
AACCATCAAAAATGAAAAGATGACTAAAAAGGAGAAGGCAATCGAAAATA
TCGATGCCTTCACACATTTTGTAGCTGGTTGGGTCTCAGGTTTGATTGAT
TGTTGTCGACAGATCTATCGCCAACAAGGTTTTTTCGGACTCTTCAAAGG
GTTCAATGCAACGTTCATTCGAGATGCCATCGGTTTCACTGCGTTCTTTG
GAATTTTCGAACAATTTTCACGATGGATATCTAAAGAAGGGCCACCGTAT
CGTGATATTACCATAGTTGGGCACGTTGTGGCCGGAGGGCTTACGGGGGC
CATATCATGGGGATGCGCTTTTCCCGCTGACGTCATCAAATGTCGGATTC
AAGTAGATTACGAGGGGCGATATAACGGTTTTATTGACTGTGTTCGCAAA
TCTTATAAAGAGGAAGGTCCGGCGCTTTTCCGGCGTGGTTTTTGGCCCTG
TGTTTTGAGAGGGTTTCCAATGAACGCAGCAATCTTTAGTATTTATCATT
ATATGATCCGTGTTTATGAAGACCACGATATGGCAGATAGGATTGTAACA
AAGTTTTTGTACGTGGATTGAATCGCAGAAAAATCAAGTTTATAAAGGTT
TATGGGTTGTTCAAAGGTATGTCGTCACCGCTCCTGGGAACTGCTCTTTG
GAATGCTGTTATCTTCGGTACCTATGGCAACACCATACGCTGGTTGGCTG
GTGATAGCCTAGAAGAACAGCATCGGATGAGTAATGTTGTAATCGCTAGT
CTAGCGTCAGGTTTCACTCAAACTTTTGTTATTACACCTCTGGAGCTCAC
CAAAACGAGGCTACAAATTCAAACGTTGTGCGGGCGTGTTGGTGAGTCAT
CCTTTGGACACAGTGAAAGTTCGTTTACAAACGCAAGGCGTATCTGCAAT
ACAACAACAGTATCGGGGTACATGGCATTGTCTATCTGAAACCATCAAAA
ATGAAAAGATGACTAAAAAGGAGAAGGCAATCGAAAATATCGATGCCTTC
ACACATTTTGTAGCTGGTTGGGTCTCAGGTTTGATTGATTGTTGTCGACA
GATCTATCGCCAACAAGGTTTTTTCGGACTCTTCAAAGGGTTCAATGCAA
CGTTCATTCGAGATGCCATCGGTTTCACTGCGTTCTTTGGAATTTTCGAA
CAATTTTCACGATGGATATCTAAAGAAGGGCCACCGTATCGTGATATTAC
CATAGTTGGGCACGTTGTGGCCGGAGGGCTTACGGGGGCCATATCATGGG
GATGCGCTTTTCCCGCTGACGTCATCAAATGTCGGATTCAAGTAGATTAC
GAGGGGCGATATAACGGTTTTATTGACTGTGTTCGCAAATCTTATAAAGA
GGAAGGTCCGGCGCTTTTCCGGCGTGGTTTTTGGCCCTGTGTTTTGAGAG
GGTTTCCAATGAACGCAGCAATCTTTAGTATTTATCATTATATGATCCGT
GTTTATGAAGACCACGATATGGCAGATAGGATTGTAACAAAGTTTTTGTA
CGTGGATTGAATCGCAGAAAAATCAAGTTTATAAAGGTTTATGGGTTGTT
CAAAGGTATGTCGTCACCGCTCCTGGGAACTGCTCTTTGGAATGCTGTTA
TCTTCGGTACCTATGGCAACACCATACGCTGGTTGGCTGGTGATAGCCTA
GAAGAACAGCATCGGATGAGTAATGTTGTAATCGCTAGTCTAGCGTCAGG
TTTCACTCAAACTTTTGTTATTACACCTCTGGAGCTCACCAAAACGAGGC
TACAAATTCAAACGTTGTGCGGGCGTGTTGGTGAGTCATCCTTTGGACAC
AGTGAAAGTTCGTTTACAAACGCAAGGCGTATCTGCAATACAACAACAGT
ATCGGGGTACATGGCATTGTCTATCTGAAACCATCAAAAATGAAAAGATG
ACTAAAAAGGAGAAGGCAATCGAAAATATCGATGCCTTCACACATTTTGT
AGCTGGTTGGGTCTCAGGTTTGATTGATTGTTGTCGACAGATCTATCGCC
AACAAGGTTTTTTCGGACTCTTCAAAGGGTTCAATGCAACGTTCATTCGA
GATGCCATCGGTTTCACTGCGTTCTTTGGAATTTTCGAACAATTTTCACG
ATGGATATCTAAAGAAGGGCCACCGTATCGTGATATTACCATAGTTGGGC
ACGTTGTGGCCGGAGGGCTTACGGGGGCCATATCATGGGGATGCGCTTTT
CCCGCTGACGTCATCAAATGTCGGATTCAAGTAGATTACGAGGGGCGATA
TAACGGTTTTATTGACTGTGTTCGCAAATCTTATAAAGAGGAAGGTCCGG
CGCTTTTCCGGCGTGGTTTTTGGCCCTGTGTTTTGAGAGGGTTTCCAATG
AACGCAGCAATCTTTAGTATTTATCATTATATGATCCGTGTTTATGAAGA
CCACGATATGGCAGATAGGATTGTAACAAAGTTTTTGTACGTGGATTGAA
TCGCAGAAAAATCAAGTTTATAAAGGTTTATGGGTTGTTCAAAGGTATGT
CGTCACCGCTCCTGGGAACTGCTCTTTGGAATGCTGTTATCTTCGGTACC
TATGGCAACACCATACGCTGGTTGGCTGGTGATAGCCTAGAAGAACAGCA
TCGGATGAGTAATGTTGTAATCGCTAGTCTAGCGTCAGGTTTCACTCAAA
CTTTTGTTATTACACCTCTGGAGCTCACCAAAACGAGGCTACAAATTCAA
ACGTTGTGCGGGCGTGTTGGTGAGTCATCCTTTGGACACAGTGAAAGTTC
GTTTACAAACGCAAGGCGTATCTGCAATACAACAACAGTATCGGGGTACA
TGGCATTGTCTATCTGAAACCATCAAAAATGAAAAGATGACTAAAAAGGA
GAAGGCAATCGAAAATATCGATGCCTTCACACATTTTGTAGCTGGTTGGG
TCTCAGGTTTGATTGATTGTTGTCGACAGATCTATCGCCAACAAGGTTTT
TTCGGACTCTTCAAAGGGTTCAATGCAACGTTCATTCGAGATGCCATCGG
TTTCACTGCGTTCTTTGGAATTTTCGAACAATTTTCACGATGGATATCTA
AAGAAGGGCCACCGTATCGTGATATTACCATAGTTGGGCACGTTGTGGCC
GGAGGGCTTACGGGGGCCATATCATGGGGATGCGCTTTTCCCGCTGACGT
CATCAAATGTCGGATTCAAGTAGATTACGAGGGGCGATATAACGGTTTTA
TTGACTGTGTTCGCAAATCTTATAAAGAGGAAGGTCCGGCGCTTTTCCGG
CGTGGTTTTTGGCCCTGTGTTTTGAGAGGGTTTCCAATGAACGCAGCAAT
CTTTAGTATTTATCATTATATGATCCGTGTTTATGAAGACCACGATATGG
CAGATAGGATTGTAACAAAGTTTTTGTACGTGGATTGAATCGCAGAAAAA
TCAAGTTTATAAAGGTTTATGGGTTGTTCAAAGGTATGTCGTCACCGCTC
CTGGGAACTGCTCTTTGGAATGCTGTTATCTTCGGTACCTATGGCAACAC
CATACGCTGGTTGGCTGGTGATAGCCTAGAAGAACAGCATCGGATGAGTA
ATGTTGTAATCGCTAGTCTAGCGTCAGGTTTCACTCAAACTTTTGTTATT
ACACCTCTGGAGCTCACCAAAACGAGGCTACAAATTCAAACGTTGTGCGG
GCGTGTTGGTGAGTCATCCTTTGGACACAGTGAAAGTTCGTTTACAAACG
CAAGGCGTATCTGCAATACAACAACAGTATCGGGGTACATGGCATTGTCT
ATCTGAAACCATCAAAAATGAAAAGATGACTAAAAAGGAGAAGGCAATCG
AAAATATCGATGCCTTCACACATTTTGTAGCTGGTTGGGTCTCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008756XLOC_008756Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015692-exon-sc0000215-1575043694:348368..348415TCONS_00015692-exon-sc0000215-1575043694:348368..348415Clytia hemisphaericaexon
TCONS_00015692-exon-sc0000215-1575043694:347990..348139TCONS_00015692-exon-sc0000215-1575043694:347990..348139Clytia hemisphaericaexon
TCONS_00015692-exon-sc0000215-1575043694:347309..347442TCONS_00015692-exon-sc0000215-1575043694:347309..347442Clytia hemisphaericaexon
TCONS_00015692-exon-sc0000215-1575043694:345959..346185TCONS_00015692-exon-sc0000215-1575043694:345959..346185Clytia hemisphaericaexon
TCONS_00015692-exon-sc0000215-1575043694:343334..343359TCONS_00015692-exon-sc0000215-1575043694:343334..343359Clytia hemisphaericaexon
TCONS_00015692-exon-sc0000215-1575043694:341838..342938TCONS_00015692-exon-sc0000215-1575043694:341838..342938Clytia hemisphaericaexon
TCONS_00015692-exon-sc0000215-1510915933:348368..348415TCONS_00015692-exon-sc0000215-1510915933:348368..348415Clytia hemisphaericaexon
TCONS_00015692-exon-sc0000215-1510915933:347990..348139TCONS_00015692-exon-sc0000215-1510915933:347990..348139Clytia hemisphaericaexon
TCONS_00015692-exon-sc0000215-1510915933:347309..347442TCONS_00015692-exon-sc0000215-1510915933:347309..347442Clytia hemisphaericaexon
TCONS_00015692-exon-sc0000215-1510915933:345959..346185TCONS_00015692-exon-sc0000215-1510915933:345959..346185Clytia hemisphaericaexon
TCONS_00015692-exon-sc0000215-1510915933:343334..343359TCONS_00015692-exon-sc0000215-1510915933:343334..343359Clytia hemisphaericaexon
TCONS_00015692-exon-sc0000215-1510915933:341838..342938TCONS_00015692-exon-sc0000215-1510915933:341838..342938Clytia hemisphaericaexon
TCONS_00015692-exon-sc0000215-1491911889:348368..348415TCONS_00015692-exon-sc0000215-1491911889:348368..348415Clytia hemisphaericaexon
TCONS_00015692-exon-sc0000215-1491911889:347990..348139TCONS_00015692-exon-sc0000215-1491911889:347990..348139Clytia hemisphaericaexon
TCONS_00015692-exon-sc0000215-1491911889:347309..347442TCONS_00015692-exon-sc0000215-1491911889:347309..347442Clytia hemisphaericaexon
TCONS_00015692-exon-sc0000215-1491911889:345959..346185TCONS_00015692-exon-sc0000215-1491911889:345959..346185Clytia hemisphaericaexon
TCONS_00015692-exon-sc0000215-1491911889:343334..343359TCONS_00015692-exon-sc0000215-1491911889:343334..343359Clytia hemisphaericaexon
TCONS_00015692-exon-sc0000215-1491911889:341838..342938TCONS_00015692-exon-sc0000215-1491911889:341838..342938Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015692-proteinTCONS_00015692-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000215supercontigsc0000215:341838..348415 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	5.43815e-06	0	0.236208	0.0765458	3.99601	4.0154	2.19966	2.41055	0.676606	2.14064	1.40772	1.59142	1.05929	0.790605	0.957957	0.336936	0.493575	0.450233	0.506782	1.43184	0.652782	0.65164	4.63464	3.01134	0.137698	0.443341	2.49123	2.4742
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002067Mit_carrier
IPR023395Mt_carrier_dom
IPR018108Mitochondrial_sb/sol_carrier
Vocabulary: Biological Process
TermDefinition
GO:0055085transmembrane transport
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055085 transmembrane transport
Blast
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BLAST of TCONS_00015692 vs. Swiss-Prot (Human)
Match: MCATL (Mitochondrial basic amino acids transporter OS=Homo sapiens GN=SLC25A29 PE=1 SV=2)

HSP 1 Score: 223.016 bits (567), Expect = 3.582e-67
Identity = 117/273 (42.86%), Postives = 160/273 (58.61%), Query Frame = 3 
Query:  177 FVAGWVSGCAGVLVSHPLDTVKVRLQTQGVSAIQQQYRGTWHCLSETIKNEKVYGLFKGMSSPLLGTALWNAVIFGTYGNTIRWLAGDSLEEQHRMSNVVIASLASGFTQTFVITPLELTKTRLQIQTSQKNQVYKGLIDCCRQIYRQQGFFGLFKGFNATFIRDAIGFTAFFGIFEQFSRWISKEGPPYRDITIVGHVVAGGLTGAISWGCAFPADVIKCRIQVD---YEGRYNGFIDCVRKSYKEEGPALFRRGFWPCVLRGFPMNAAIFS 986
            F+AG   G AGVLV HP DTVKVRLQ Q V   + QYRGT HC    IK E V GL+KG+ SPL+G    NA++FG  GNT+R L  DS   Q       +A  A+G  Q  +  P+EL KTRLQ+Q +   + YKG +DC  QIY  +G  G+ +G  +T +R+   F  +F  ++  +R +  E  P   + +   ++AGG +G +SW   +P DV+K R+Q D      RY G +DCV +SY+ EG  +F RG    +LR FP+NAA F+
Sbjct:    5 FLAGCAGGVAGVLVGHPFDTVKVRLQVQSVE--KPQYRGTLHCFKSIIKQESVLGLYKGLGSPLMGLTFINALVFGVQGNTLRALGHDSPLNQF------LAGAAAGAIQCVICCPMELAKTRLQLQDAGPARTYKGSLDCLAQIYGHEGLRGVNRGMVSTLLRETPSFGVYFLTYDALTRALGCE--PGDRLLVPKLLLAGGTSGIVSWLSTYPVDVVKSRLQADGLRGAPRYRGILDCVHQSYRAEGWRVFTRGLASTLLRAFPVNAATFA 267
The following BLAST results are available for this feature:
BLAST of TCONS_00015692 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MCATL3.582e-6742.86Mitochondrial basic amino acids transporter OS=Hom... [more]
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