TCONS_00015687 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015687
Unique NameTCONS_00015687
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1822

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015687 ID=TCONS_00015687|Name=TCONS_00015687|organism=Clytia hemisphaerica|type=transcript|length=1822bp
ccattttagaaaaaaactaaaatcaaatAATGGAACGTGATGAACTATTG
AGAAcaaagaacaaaacaaaaattcggATGTCAGCAAAAAAGAAACGAGT
TGCTGTAATTGGTTGTGGAGCAAGTGGCATATCGGNaagaacaaaacaaa
aattcggATGTCAGCAAAAAAGAAACGAGTTGCTGTAATTGGTTGTGGAG
CAAGTGGCATATCGGCACTAGTCGCCTTTGCGAAAGCTCAAGAAAACGGT
GGTGAAATACCCGAAGTTGTATGTTTTGAGAAACAATCCAGTATGGGCGG
ATTATGGATTTATGACGGGCGTGTGGGCGTGAATGAATATGGCGAACCTA
TAAGAAGCCCAATGTATCGCGATTTAAGATTGAACAGTCCTAAGGAAGTT
GAGGAATATTATGATTATACTTATGATGAACATTTCGGTCAAAAACCAAT
TCCCTCTTATTGTGATAGAGCAACTAAATTGGACTATCTGATTGGACGAG
CTAAGAAATATGATGTTGAAaagtttgtgaaattttcaagtgTTGTTATC
AAAGTTGAGAAACTTGGTGATGAATTTTCGGTAATTTATAAACATTTACC
AAGTAAGGAGAGTTTCGAGGAAAGCTTCGATTATGTTATTGTTGCATCAG
GACTACATTCTATTCCGAAAACCCCTAATTATCCCGGTATCGATACTTTT
CCTAGTCGGATTATCCATTCAACCGATTTTAAATTACCAGATGAACTTAA
ACTGATTGATTGTCTTTTAATTATTGGGACTTCATTTAGTGCCATGGATA
TCGCAACTTTTCATTACAAAATTGGCGGCAGGAAGACGTTGCTTTCGTAC
CACGGTGAGAAACCGTCGTTCGATTTAAAATGGCCTGATTCGGTCAGCTA
TGTTTCCGATCTTGCCCATGTTTCTGGTTCAGTTTGTACTTTCAAAGATG
GAAGTCAATATAAAGTGGACATGATTGTCTTTGCTACAGGGTACGAGTTA
AAGTTTCCATTTTTAGAGCCAAAACTACGTCTGGAAGCGCAAGGTTATCG
CTTCGTTCACCACGATTTGTATAAAGGTGTTTTCTATCATGGGGAACCTT
CTATGTTCTATATTGGAATGCTGATACCGATTTACACCTTGACTTTATAC
GAGCGACAGGCTTGGTTGATTAAGGAGTTTCTTATGGATCGGTTTACACT
TCCTTCTAAAGAGGACAGGAAACTTGACATTGATGTTTGGATACAGAAAG
CTCAATCATTACCAAAGAGAGGAGGTCCCTTAACCAACGATCCGATATAC
TATAATTGGTTACTGGATTATATGAAAGATATTGTTGAGGATTTGAATTT
CCCAGACAAAGCAGATTTAAAGTTCATGGTTGACGTTCAATATCAAAACA
GCATCAACCGAAGTAACAACATTATCACTTTCCGTGATGTACAATTTCCG
TCGGGATATACAGGAACTATGGGTAACCTTTGTGCTGATCTTTAAAATGA
AGgtctccttaacttgaacaagttttctcTTCCGTTAGCTAACAATGCca
tataaaccttactccataccTCCAGAGTTTCATATCTAGAGCGAATTTGT
gctccccgtgcgtgttcgattTGTACAGAATCCACTGGATGATGGTATCC
AAGTCGTCTGTTTATCTAGCCCATCATCTTAACTGTCGGATTGGGTAAGA
TAAGGTAAATATATTCATATTATGGAACCCTGGTGGAACTCTCATGTTCA
TGAATTGAACTGGAATTACAATTAAATGGGTCTTGAAAAGCTGATGATAT
ACTTCTAACTAAATGAACTTTA
Run BLAST on NCBI

transcript from alignment at sc0000215:220783..226200-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015687 ID=TCONS_00015687|Name=TCONS_00015687|organism=Clytia hemisphaerica|type=transcript|length=5418bp|location=Sequence derived from alignment at sc0000215:220783..226200- (Clytia hemisphaerica)
CCATTTTAGAAAAAAACTAAAATCAAATAATGGAACGTGATGAACTATTG
AGAACAAAGAACAAAACAAAAATTCGGATGTCAGCAAAAAAGAAACGAGT
TGCTGTAATTGGTTGTGGAGCAAGTGGCATATCGGNAAGAACAAAACAAA
AATTCGGATGTCAGCAAAAAAGAAACGAGTTGCTGTAATTGGTTGTGGAG
CAAGTGGCATATCGGCACTAGTCGCCTTTGCGAAAGCTCAAGAAAACGGT
GGTGAAATACCCGAAGTTGTATGTTTTGAGAAACAATCCAGTATGGGCGG
ATTATGGATTTATGACGGGCGTGTGGGCGTGAATGAATATGGCGAACCTA
TAAGAAGCCCAATGTATCGCGATTTAAGATTGAACAGTCCTAAGGAAGTT
GAGGAATATTATGATTATACTTATGATGAACATTTCGGTCAAAAACCAAT
TCCCTCTTATTGTGATAGAGCAACTAAATTGGACTATCTGATTGGACGAG
CTAAGAAATATGATGTTGAAAAGTTTGTGAAATTTTCAAGTGTTGTTATC
AAAGTTGAGAAACTTGGTGATGAATTTTCGGTAATTTATAAACATTTACC
AAGTAAGGAGAGTTTCGAGGAAAGCTTCGATTATGTTATTGTTGCATCAG
GACTACATTCTATTCCGAAAACCCCTAATTATCCCGGTATCGATACTTTT
CCTAGTCGGATTATCCATTCAACCGATTTTAAATTACCAGATGAACTTAA
ACTGATTGATTGTCTTTTAATTATTGGGACTTCATTTAGTGCCATGGATA
TCGCAACTTTTCATTACAAAATTGGCGGCAGGAAGACGTTGCTTTCGTAC
CACGGTGAGAAACCGTCGTTCGATTTAAAATGGCCTGATTCGGTCAGCTA
TGTTTCCGATCTTGCCCATGTTTCTGGTTCAGTTTGTACTTTCAAAGATG
GAAGTCAATATAAAGTGGACATGATTGTCTTTGCTACAGGGTACGAGTTA
AAGTTTCCATTTTTAGAGCCAAAACTACGTCTGGAAGCGCAAGGTTATCG
CTTCGTTCACCACGATTTGTATAAAGGTGTTTTCTATCATGGGGAACCTT
CTATGTTCTATATTGGAATGCTGATACCGATTTACACCTTGACTTTATAC
GAGCGACAGGCTTGGTTGATTAAGGAGTTTCTTATGGATCGGTTTACACT
TCCTTCTAAAGAGGACAGGAAACTTGACATTGATGTTTGGATACAGAAAG
CTCAATCATTACCAAAGAGAGGAGGTCCCTTAACCAACGATCCGATATAC
TATAATTGGTTACTGGATTATATGAAAGATATTGTTGAGGTAAGACTCGT
CTACCGGGTGTGCCACAAAAAAGTTTCTCTCTTTAAAAATTGTTTTCTCG
AAATCTGAAAATTTTAAGATAACCATACTTATTCTATTTGTGAGAAGAAA
GATGAACTTAAATTTTGATGGGTCATTGTTTAAATTTGTTTCATTAGATC
GAAAGTTATGTTCAATTGAATAAAAAATAACTTTCTGAAAGTGGTCAAAA
ACGTTAAAAATCGACCTATTAAATTAAACAGAAGCATAATTACATGANNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGATGATTTTCAA
TAAACTTTTGTTGTTATACACAGTCACTCTTACACATGATGACTCCAGCC
ATGATTGGTATCAGACAGTCAGAATGTTGGAAATAAAACTTTTACGAGAA
ATTATTGATAGAAATTATATTGACTTATTTTTACAATTTTGGTGGTGTGG
GTTTTGTTGGTTGATAATGTTTACACCGTGGGATCCTGTTACGGTATATT
GATTGTTGTTTGTTGGAATACACCGTTTAACAGTCTCGCCATCTCCACCG
TAGAGGCGGTAGGTAAAAATAAATGCTCGCTTTAGTGTTCATACGCGTGT
GCAACCGACACCTGTTAAACGGTGTATTGATTACCAAAAAAAGAGAACCT
TTTTTTGATAAATACTTTATTTTTTTCATGAACCGTGTTCTAGTCTTGTA
AACCAATGCAGTGTCTGTTTTCAAATCTTGAATTCTCTATTATACCTACT
GAATTTTTAAAATATGCATGATACAGTAATTATGCATGGCTGTATCATTG
TTATGCTGGAGTACATAATTATTCGACATGGCTGCCTCTTTAAAAAAAGG
TCTACTGTTTACAACCTATTTAAATGCTTTAAAACTTTGAGCCACATTTT
TTTCTTTATTGGCCCAGCTAGCTTTAGCGTACTGGGCCTTTCATTAGCAT
TCTGCCCGGTGTCAGTGTGTAACAATTTACTAGGCGATACGCGTNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCACCTGAGCGTCCC
ACCTTAGCGTCCCACTACCGTCCCACCTTAGCGTCCCACTACCGTCCCAC
CTGAGCGTCCCACTCGAGCGTCCCACCTGATCGTCCCACCGTCCCACGTC
CCACTTCTCCAGTATGCCTACAGAATGAAAAAAATTATTTAGAAACAAAG
AGATCTTTATGACCATGGTGGGCGACATATTTCTTTGGCCCCCTCAATTC
CATTCGCATGCCGGGGGCCATGAATAGGAATGGTTCTTTTAAAATTTTTA
GATTTCGAGCAAATTAGTTTCAAAGAGAGAAACTTTTTTACGGCGCACCC
GGTACAACAAACNATTGGAGTCTCGGATAGGACACTTAGAACGCGAAGAA
AGGAATTTACTCAAGAAATTTTAACATATGATGTAATTAACGACTATGAA
CTTGATGATGGTCCCGCCGTCCCACCATGCGCGGGTCATGCATGCAAACT
TTAAAATGAGCGAGGCAAGACGTGCCAACCTCGTTTCCAGACTGTTTTCG
AAAAGATAGTATGTTTTAAAAAAGATAGTATCGTTTTAAAATAGATAGTA
TTGTTTAAAAAAAGATAGTATCATTACAAAAGATAGTATGTTTTTAAACG
AAGATAGTATGTTTTAAACGAGAATAGTATTTTTTCAAACGGAAATAGTA
TTTTTTTAAAAAGATAGTATGTTTTAAACGAAGATAGTATTGTTTTAAAG
AGATAGTATTTATTTCCGCTTTGGCGCGCCATAAAACTCTTCTTTCTTTG
AACGAGTTTTTTTCTTTGGCCTTGTCATTATTTACATTATCAAATTATTT
CCGCCGCGCAACATATTACGTTTTATATCATACAACTATGTTATATCGTA
ATATCATAATAATATATTACACGGACGATAGCATCATTTAATATTATTTG
TACTTTTGCCGCTATACACATTTTTAACGTCACTTTTTTCGAGACTTGCC
GTAGAAGTCTGAGTCTCGTGTTCAAAATTCAAAGAACTCACTTCTGAATT
GACCATAACCTTGCTCTTCTCGTTTATTTCTTGAGGATTTGAATTTCCCA
GACAAAGCAGATTTAAAGTTCATGGTTGACGTTCAATATCAAAACAGCAT
CAACCGAAGTAACAACATTATCACTTTCCGTGATGTACAATTTCCGTCGG
GATATACAGGAACTATGGGTAACCTTTGTGCTGATCTTTAAAATGAAGGT
CTCCTTAACTTGAACAAGTTTTCTCTTCCGTTAGCTAACAATGCCATATA
AACCTTACTCCATACCTCCAGAGTTTCATATCTAGAGCGAATTTGTGCTC
CCCGTGCGTGTTCGATTTGTACAGAATCCACTGGATGATGGTATCCAAGT
CGTCTGTTTATCTAGCCCATCATCTTAACTGTCGGATTGGGTAAGATAAG
GTAAATATATTCATATTATGGAACCCTGGTGGAACTCTCATGTTCATGAA
TTGAACTGGAATTACAATTAAATGGGTCTTGAAAAGCTGATGATATACTT
CTAACTAAATGAACTTTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008753XLOC_008753Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015687-exon-sc0000215-1575043694:224862..226200TCONS_00015687-exon-sc0000215-1575043694:224862..226200Clytia hemisphaericaexon
TCONS_00015687-exon-sc0000215-1575043694:220783..221265TCONS_00015687-exon-sc0000215-1575043694:220783..221265Clytia hemisphaericaexon
TCONS_00015687-exon-sc0000215-1510915933:224862..226200TCONS_00015687-exon-sc0000215-1510915933:224862..226200Clytia hemisphaericaexon
TCONS_00015687-exon-sc0000215-1510915933:220783..221265TCONS_00015687-exon-sc0000215-1510915933:220783..221265Clytia hemisphaericaexon
TCONS_00015687-exon-sc0000215-1491911889:224862..226200TCONS_00015687-exon-sc0000215-1491911889:224862..226200Clytia hemisphaericaexon
TCONS_00015687-exon-sc0000215-1491911889:220783..221265TCONS_00015687-exon-sc0000215-1491911889:220783..221265Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000215supercontigsc0000215:220783..226200 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.43472	4.16438	3.16151	2.58263	3.73733	3.67989	3.48427	4.55343	2.28375	1.88587	3.32028	1.78711	1.09237	1.95969	1.86532	2.6023	2.21254	2.52759	1.1349	1.64436	2.44558	2.42723	4.38809	3.50989	2.6921	3.54073	2.59	2.02777	3.27129	3.0842
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00015687 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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