TCONS_00015626 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015626
Unique NameTCONS_00015626
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1499

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015626 ID=TCONS_00015626|Name=TCONS_00015626|organism=Clytia hemisphaerica|type=transcript|length=1499bp
CCACAACCACCACACACGCTCCAAAAACCACCACCACAGACTCTCCAAAA
ACAACAACCACACACGCCCCAAAAACCACAACCACCCACGCCCCAAAAAC
AACCAACCACACCCCAAAAACAACCACAACCACACACGCCCCAAAGACTA
CAACAACGCACGCCCCAAAAACCACAACCCTTGCGCACACAACAGTAACA
ACAACACCAACGACCACCTCTACAACTCCAGCAACGACCAAGCAAACTGA
AGAAAacccaGAACCGTGCAAGCGACTTGGTTTGGAATGTGTTGTCTGTT
CACAATGCGGTGAAAATGGATTTTGTATCACCAATCTCGATTTACGAAAT
TCCAACATGGTTTGTTTATGTCGATATGGTTTCACTGGAAGTCGAGCTAA
ATTTGTTCCTCAGCATTTGGAAACAAGTACATTTACCAAAAATCGAATAA
GAGCTGATTCTTGTGAACTCAAATGCAATTATTCGCCTCATAACAGGAAT
TCCCAATGCGCCAACTTGGAATGATAAAACTATCCTAATACTAAGCTATC
CTATCGTGACACAGCCGAAAGGGTGattcaaaaaagtaaacaatattttt
aaagaatataataatttgtttttgtttagatttttttgtaTGAAATGTAT
TATTCCAAATTTTGTGGACGAATTTTTtacgacaatttttttttaatttt
tagctatttttttttcaaatcttttgtaTTTAAAGAACGATTTAGATGAT
AcgtagaaaaataaaataaataagcttGAATGTTTAGATGATCCATTAAT
AAATCTTTCTgagtaaaaatataaaaatcactATCTTTTTATGTACACAT
CAAAATATatgtttcaaaaatataaacatttacAAATTATGTTCGGAAAA
TGTCCGAAAATACCAATACTATATTCATAAATTACGTcgcgaacatcact
tgcctcgttttgaaagtATTGCCATGGTAACTAActcccccggggggggg
tactagggcaagatgggttacggggatgctccgctggtcagggtaccttt
tttaaactccacgagtcccaggtagcgtcgcaaaaacaccaaaatagaaa
aatcagtccctcgtagggtgcctatttttggaaaatttggggaaaaagta
gaaaatttgagaaaattttggaatttcagtcccattcagggtcacttttt
tcgcaaatttcgagtcccacgtagggtccaatTTTCGAATCTCAGCGGaa
cacccccgtcggtcgacaagggtagtaccccccccgggctaaCTCCCACG
TCCCagttgattttattaaaactactttcatttataaaaaaagcttttaa
taTCTCAAAGGACATAATAACCattgaaattgtttgaatacgagacaAGT
GATGGATAAGTTGAATTTGATTGCAATTTTGTGTTCGTCGTTGAAAAAGT
ACCCATGAGAAGGATATTATCGTATAATGGGTTCATTCAGAAAGTCTTT
Run BLAST on NCBI

transcript from alignment at sc0000214:394132..400585+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015626 ID=TCONS_00015626|Name=TCONS_00015626|organism=Clytia hemisphaerica|type=transcript|length=6454bp|location=Sequence derived from alignment at sc0000214:394132..400585+ (Clytia hemisphaerica)
CCACAACCACCACACACGCTCCAAAAACCACCACCACAGACTCTCCAAAA
ACAACAACCACACACGCCCCAAAAACCACAACCACCCACGCCCCAAAAAC
AACCAACCACACCCCAAAAACAACCACAACCACACACGCCCCAAAGACTA
CAACAACGCACGCCCCAAAAACCACAACCCTTGCGCACACAACAGTAACA
ACAACACCAACGACCACCTCTACAACTCCAGCAACGACCAAGCAAACTGA
AGAAAGTAAGAAACCTTCCTGTTGAAATTTTCATCGCTGAGGGCTTCTTT
TTTACGCCGAAACGATTTTAATCCGAATACGCAACTTTGCTTACAAAGAG
ACTTAATCGGCCTTTCGTTACGTTGTGAATATTAAATGCATCATTTTGAA
TTCAATCTCGACGCAGTTCACCAAATTCGACTCTATTAAAAAATGTGTCC
ATTGTAGCGCATTGTTTTTCGTgcaatttgaaaacaaaacgcCGTGGAAT
AACATACTTGAATCCCTCCtgtatattttacagacccaGAACCGTGCAAG
CGACTTGGTTTGGAATGTGTTGTCTGTTCACAATGCGGTGAAAATGGATT
TTGTATCACCAATCTCGATTTACGAAATTCCAACATGGTTTGTTTATGTC
GATATGGTTTCACTGGAAGTCGAGCTAAATTTGTTCCTCAGCATTTGGAA
ACAAGTACATTTACCAAAAATCGAATAAGAGCTGATTCTTGTGAACTCAA
ATGCAATTATTCGCCTCATAACAGGTATCTAGTCTCTCGTGTTGAAATTT
TCGCGATTATTGCAAATTGTTAGAATTCGCGAGATTAAATGATTGCAAAa
ctaaattcccgcgaaatttggTTATTTCGTTCAAGCTCAGTTATCAAAAC
TCCCTCATTCTAAAGTTTTTATAGAAAGGAAGTTTTTAGAAATCAGTAAA
ACAAATACTTTCACGCTTTACTTTAAGAGAAAgccaggaaaagtttttta
ctCTCTCGTcatgattcgcgaaattaaatctccGCGAAATACAAAAAAAT
GCAATAATAGCCTGAATCACGAAATTTTCTGCCGGGAAAATTTCTGTCGT
TATTTTTTGTtatcttttatcatttttaagaaacCCTCACTGTGTCAAAG
AGTCACCCATCCATGTAGAAACAACCAAAACCACCTACGCCCCAAAGACG
ACAACCACGCACGCTCCAAAAACCACAACCACCACACACGCTCCAAAAAC
CACCACCACAGACTCTCCAAAAACAACAACCACACACGCCCCAAAAACCA
CAACCACCCACGCCCCAAAAACAACCAACCACACCCCAAAAACAACCACA
ACCACACACGCTCCAAAGACAACAACCACAACACCAACGACCACCTCTAC
AACAATAGTAACGAACAAGCAAACTGAAAGTAAGAAATTTTCTTGTTAGA
ATTTTCCCATGAGTAGTGGAGAAGAAAGAACCTCAAAACATAAGTTCAGG
TCAAAATTTAAAGCTATGAATGAATCCAAAGTAACCTTTCTCAACTAAAT
ATTCCAATGTTATGCAAATCAGATTCTTTGCTCTGTCTAAATATATATAT
AGTCGAACCTCAAAATATGACTTCTTTATGAGCGTGTCAATACAATGGCT
TTAGATATTGACACATTGTTTCCAGAGGTGCTCCCTCTCAAGGATCCCTT
TAAGTAATAGGGTTTGCAAGATGTCCGTGTATTTTACGGGTCTATACCTA
TTCAAGGGACactttgagaaattctttcCGGTATATTTTACAGACTCAGA
ACCGTGCAAGCGACTTGGTTTGGAATGTGTTGTCTGTTCACATTGCGGTG
AAAATGGATTTTGTATCACCAATCTCGATTTACGAAATTCCAACATGGTT
TGTTTATGTCGATATGGTTTCACTGGAAGTCNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCAGGG
GGTAATAATGCGCACATCATCTTTTTTCGCCTATATTGGCTACATAACTT
AATTGAATAATGAAGAGCTCAAATATGTTTAAAATCCTGGACAGAAGTGA
GGAAGGTTTGACCAATATAAAACTCGTACTACAATTTCACGACACATTTA
TTTGCACTTTTTGGCATCTCAGGGGGCAAAATTCGGAGCATTCTCCGACC
TCCATgttgtaccctgagtatcaacCTCAGGACGACCaagtatagaaatt
ttatcgcgcatgtgtcaatctaatcactatagagagaatcaaagatgaag
agcaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTCGATTA
AGTCCaacattttctatgtttttgtcgagtttttgagtattttaaagcgt
gtaatttgttaAAGAGGGTCAAAACAGGCCAAAAATAGGCAAAAGCGGCT
TCTTTTTACCCGTTTTTCTCCTTGCGAGCACCTGGAAAACATCTTTCGAA
GCTTTTTGTTTTACTACTTCTTTTGAGTATATTTACCGAGTTTCAAGACA
TTTCCATGGCTAAGATAAAAAGATATGGACTGATGTTACTGACATAAAAC
GACTTCTCAATAGTAATTCCTTACCNTTTGGTAACTCAGTATACCCTAAA
Gaacatctgtgccaattttcagcttgatggcaattttgtccgggttgtgg
tgaaatttcaactaattctacctgactataaGTTCAGGTCAAAATTTAAA
GCTATGAATGAATCCAAAGTAACCTTTCTCAACTAAATATTCCAATGTTA
TGCAAATCAGATTCTTTGGTCTGTCTAAATATATATATAGTCGAACCTCA
AAATATGACTTCTTTATGAGCGTGTCAATACAATGGCTTTAGATATTGAC
ACATTGTTTCCAGAGGTGCTCCCTCTCAAGGATCCCTTTAAGTAATAGGG
TTTGCAAGATGTCCGTGTATTTTACGGGTCTATACCTATTCAAGGGACac
tttgagaaattctttcCGGTATATTTTACAGACTCAGAACCGTGCAAGCG
ACTTGGTTTGGAATGTGTTGTCTGTTCACATTGCGGTGAAAATGGATTTT
GTATCACCAATCTCGATTTACGAAATTCCAACATGGTTTGTTTATGTCGA
TATGGTTTCACTGGAAGTCGAGCTAAATTTGTTCCTCAACGTTTGGAAAC
AAGTACTTTTACCAAAAATCGAATAAGAGCTGATTCTTGTGAACTCAAAT
GCAATTATTCGCCTCATAACAGGTACATTCTTTTAAAATGTCCGCATTTT
TTAGAAAAGAGAACGAGAAAGTAATAAAATCTGATCACAACTTCTGACCT
CGAAGCTTCAAGTAGCCGAAAGAAATTCAGCGGCTTAAATGTGGATGAGT
AGCTTTCTTTAGGTACACTATAGATCTCTAAATAAACAATCGAGTAATGT
TTAATAGCTAAATTTGGCAGCCTAGCAAGCAATGCTGAAGGTTTATAGGT
ATAAGTCATCCCTTTCAACCCTTTAAAGCGCGAATAAGCTTGGGTTTAAG
TTCACAAGGTAGGATTAACGTCAAATGTCGAAATAGgaaatttcgtgtta
attaaaaccagccgtggtgtcctttaaaagaccatgttcgcacgtatcgg
ttccgtttcgctgttaagcgaaatgaagccattctattggttagaagtga
ttggatagaatggcttcatttcgttttggAGCGGAACAGAATCGTAGTGT
GTGAACGTGGtctaaaaagaaaatgaagttcGCGTTTTATTCTTCGCTTG
TTGATTTTAAGGCCGTTAATTGTGTGTCTACTTATTTTCATGTAAATAGG
TACATAGTTTCATCTACTTTTAATATTTAATAATGCTCGTTCTTTTTTCA
GGAATTCCCAATGCGCCAACTTGGAATGATAAAACTATCCTAATACTAAG
CTATCCTATCGTGACACAGCCGAAAGGGTGattcaaaaaagtaaacaata
tttttaaagaatataataatttgtttttgtttagatttttttgtaTGAAA
TGTATTATTCCAAATTTTGTGGACGAATTTTTtacgacaattttttttta
atttttagctatttttttttcaaatcttttgtaTTTAAAGAACGATTTAG
ATGATAcgtagaaaaataaaataaataagcttGAATGTTTAGATGATCCA
TTAATAAATCTTTCTgagtaaaaatataaaaatcactATCTTTTTATGTA
CACATCAAAATATatgtttcaaaaatataaacatttacAAATTATGTTCG
GAAAATGTCCGAAAATACCAATACTATATTCATAAATTACGTcgcgaaca
tcacttgcctcgttttgaaagtATTGCCATGGTAACTAActcccccgggg
gggggtactagggcaagatgggttacggggatgctccgctggtcagggta
ccttttttaaactccacgagtcccaggtagcgtcgcaaaaacaccaaaat
agaaaaatcagtccctcgtagggtgcctatttttggaaaatttggggaaa
aagtagaaaatttgagaaaattttggaatttcagtcccattcagggtcac
ttttttcgcaaatttcgagtcccacgtagggtccaatTTTCGAATCTCAG
CGGaacacccccgtcggtcgacaagggtagtaccccccccgggctaaCTC
CCACGTCCCagttgattttattaaaactactttcatttataaaaaaagct
tttaataTCTCAAAGGACATAATAACCattgaaattgtttgaatacgaga
caAGTGATGGATAAGTTGAATTTGATTGCAATTTTGTGTTCGTCGTTGAA
AAAGTACCCATGAGAAGGATATTATCGTATAATGGGTTCATTCAGAAAGT
CTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008718XLOC_008718Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015626-exon-sc0000214-1491911889:394132..394386TCONS_00015626-exon-sc0000214-1491911889:394132..394386Clytia hemisphaericaexon
TCONS_00015626-exon-sc0000214-1510915933:394132..394386TCONS_00015626-exon-sc0000214-1510915933:394132..394386Clytia hemisphaericaexon
TCONS_00015626-exon-sc0000214-1575043694:394132..394386TCONS_00015626-exon-sc0000214-1575043694:394132..394386Clytia hemisphaericaexon
TCONS_00015626-exon-sc0000214-1491911889:394665..394905TCONS_00015626-exon-sc0000214-1491911889:394665..394905Clytia hemisphaericaexon
TCONS_00015626-exon-sc0000214-1510915933:394665..394905TCONS_00015626-exon-sc0000214-1510915933:394665..394905Clytia hemisphaericaexon
TCONS_00015626-exon-sc0000214-1575043694:394665..394905TCONS_00015626-exon-sc0000214-1575043694:394665..394905Clytia hemisphaericaexon
TCONS_00015626-exon-sc0000214-1491911889:399583..400585TCONS_00015626-exon-sc0000214-1491911889:399583..400585Clytia hemisphaericaexon
TCONS_00015626-exon-sc0000214-1510915933:399583..400585TCONS_00015626-exon-sc0000214-1510915933:399583..400585Clytia hemisphaericaexon
TCONS_00015626-exon-sc0000214-1575043694:399583..400585TCONS_00015626-exon-sc0000214-1575043694:399583..400585Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000214supercontigsc0000214:394132..400585 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.737732	0.646995	1.18721	1.0946	5.03307	4.5415	6.00969	5.67826	6.5194	6.10894	2.70558	2.63979	1.92218	2.83686	3.15321	3.35401	6.43874	8.33817	3.86288	1.75777	2.07974	2.72724	1.93209	1.88202	1.41744	1.66289	4.44829	5.58798	7.52215	7.22575
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00015626 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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