|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015586 ID=TCONS_00015586|Name=TCONS_00015586|organism=Clytia hemisphaerica|type=transcript|length=2716bpRun BLAST on NCBI transcript from alignment at sc0000214:90899..170801+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00015586 ID=TCONS_00015586|Name=TCONS_00015586|organism=Clytia hemisphaerica|type=transcript|length=79903bp|location=Sequence derived from alignment at sc0000214:90899..170801+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00015586 vs. Swiss-Prot (Human)
Match: CAC1H (Voltage-dependent T-type calcium channel subunit alpha-1H OS=Homo sapiens GN=CACNA1H PE=1 SV=4) HSP 1 Score: 280.796 bits (717), Expect = 4.099e-78 Identity = 204/442 (46.15%), Postives = 278/442 (62.90%), Query Frame = 3
Query: 759 VFWCLERKSRFRHWAIRMTLSPYFERITIFVILMNCVTLGLYDP-YDEDCKTQRCQILEGFETFIYAYFVAEMVIKIIASGLLGKQGYLSEGWNRLDCFIVVAGTFEL-IYGDGEFXXXXXXXXXXXXXXXINRVPSIRIXXXXXXXXXXXXGNVFILCVLILMVFAIIGVQLWNGILRNRCALTIPDTMPVSLQNTTESLMKYYIPDDSDEWEIICPTKDTSSNPELQCLGRIQGLESMVYSMP---GCNTTYGPKSNFTELVAKNLTHCIDWNMFYSSCKDFGLNPNFDAISFDNSGVAFIAIFQAMTLEGWVDIMYYLQDAYSSWVWIYFVALIVLGSYFLTNLCLVVVATQFSETRQRESALMEEARRKARXXXXXXXXXXXXXXNKGCYNQLLSIMKHYIQSGCRNLKAKIFGEKSQQISKRKKKGRHHLLQKNGGG 2069
VF+CL + +R R W +R+ +P+FE +++ VI++NCVTLG++ P D +C ++RC ILE F+ FI+A+F EMVIK++A GL G++ YL + WNRLD FIVVAG E + G LS++R VRVLRPLRAINRVPS+RILVTLLLDTLPMLGNV +LC + +F I+GVQLW G+LRNRC L D+ V N T L YY ++ +E IC ++ + +Q I G + MP G P++ E V CI+WN +Y+ C+ NP+ AI+FDN G A+IAIFQ +TLEGWVDIMYY+ DA+S + +IYF+ LI++GS+F+ NLCLVV+ATQFSET+QRES LM E R + S T CY +LL + H R +K + ++ S+ +KK +Q G G
Sbjct: 79 VFFCLGQTTRPRSWCLRLVCNPWFEHVSMLVIMLNCVTLGMFRPCEDVECGSERCNILEAFDAFIFAFFAVEMVIKMVALGLFGQKCYLGDTWNRLDFFIVVAGMMEYSLDGHNVSLSAIRTVRVLRPLRAINRVPSMRILVTLLLDTLPMLGNVLLLCFFVFFIFGIVGVQLWAGLLRNRCFL---DSAFVRNNNLT-FLRPYYQTEEGEENPFICSSRRDNG---MQKCSHIPGRREL--RMPCTLGWEAYTQPQA---EGVGAARNACINWNQYYNVCRSGDSNPHNGAINFDNIGYAWIAIFQVITLEGWVDIMYYVMDAHSFYNFIYFILLIIVGSFFMINLCLVVIATQFSETKQRESQLMREQRAR---HLSNDSTLASFSEPGSCYEELLKYVGHIF----RKVKRRSLRLYARWQSRWRKKVDPSAVQGQGPG 501 The following BLAST results are available for this feature:
BLAST of TCONS_00015586 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.