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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015584 ID=TCONS_00015584|Name=TCONS_00015584|organism=Clytia hemisphaerica|type=transcript|length=4921bpRun BLAST on NCBI protein sequence of TCONS_00015584-protein >TCONS_00015584-protein ID=TCONS_00015584-protein|Name=TCONS_00015584-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1187bp MNEQASMKNRMQDTQQTTELLSIPTTDFHRRLSQDKPVITPTTQQYHCHERun BLAST on NCBI transcript from alignment at sc0000214:90899..166928+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00015584 ID=TCONS_00015584|Name=TCONS_00015584|organism=Clytia hemisphaerica|type=transcript|length=76030bp|location=Sequence derived from alignment at sc0000214:90899..166928+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000214:90899..166928+ >TCONS_00015584 ID=TCONS_00015584|Name=TCONS_00015584|organism=Clytia hemisphaerica|type=CDS|length=46332bp|location=Sequence derived from alignment at sc0000214:90899..166928+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00015584 vs. Swiss-Prot (Human)
Match: CAC1G (Voltage-dependent T-type calcium channel subunit alpha-1G OS=Homo sapiens GN=CACNA1G PE=1 SV=3) HSP 1 Score: 282.722 bits (722), Expect = 1.389e-76 Identity = 130/233 (55.79%), Postives = 176/233 (75.54%), Query Frame = 3
Query: 2847 QFCESDCFKVSIMTAIFLNTVTMAMEHYRQPSSMTMALEIFNTIFTTVFLIEFVLKFTGYGFYGYIKNAFNVFDGIVVIISIIELAGSRAGGVSVLRTFRLMRIFKLIRFLPTLQKQIQVMLETLDSVMTFLGLLTIFIFTSSILGMHLFGGKMKV----DGVVVRHNFDDLLWSLITVFQVLTQEDWNAVLYDAMRSTTKWASVYFVLLMIIGNYILFNLLVAILVEGFSSE 3533
+ +S F IM AI +NT++M +E++ QP +T ALEI N +FT++F +E +LK YG +GYIKN +N+FDG++V+IS+ E+ G + GG+SVLRTFRLMR+ KL+RFLP LQ+Q+ V+++T+D+V TF LL +FIF SILGMHLFG K D + R NFD LLW+++TVFQ+LTQEDWN VLY+ M ST+ WA++YF+ LM GNY+LFNLLVAILVEGF +E
Sbjct: 738 KIVDSKYFGRGIMIAILVNTLSMGIEYHEQPEELTNALEISNIVFTSLFALEMLLKLLVYGPFGYIKNPYNIFDGVIVVISVWEIVGQQGGGLSVLRTFRLMRVLKLVRFLPALQRQLVVLMKTMDNVATFCMLLMLFIFIFSILGMHLFGCKFASERDGDTLPDRKNFDSLLWAIVTVFQILTQEDWNKVLYNGMASTSSWAALYFIALMTFGNYVLFNLLVAILVEGFQAE 970 HSP 2 Score: 275.789 bits (704), Expect = 2.020e-74 Identity = 199/484 (41.12%), Postives = 272/484 (56.20%), Query Frame = 3
Query: 675 GGHERHNGSHSDIQVDEIDLEETYYPE---KVFWCLERKSRFRHWAIRMTLSPYFERITIFVILMNCVTLGLYDP-YDEDCKTQRCQILEGFETFIYAYFVAEMVIKIIASGLLGKQGYLSEGWNRLDCFIVVAGTFE--LIYGDGEFXXXXXXXXXXXXXXXINRVPSIRIXXXXXXXXXXXXGNVFILCVLILMVFAIIGVQLWNGILRNRCALTIPDTMPVSLQNTTESLMKYYIPDDSDEWEIICP------TKDTSSNPELQCLGRIQGLESMVYSMPGCNTTYGPKSNFTELVAKNLTHCIDWNMFYSSCKDFGLNPNFDAISFDNSGVAFIAIFQAMTLEGWVDIMYYLQDAYSSWVWIYFVALIVLGSYFLTNLCLVVVATQFSETRQRESALMEEARRKARXXXXXXXXXXXXXXNKGCYNQLLSIMKHYIQSGCRNLKAKIFGEKSQQISKRKKKGRHHLLQKNGGGSGRSKQP 2090
GG + D + + E YP VF+ L + SR R W +R +P+FERI++ VIL+NCVTLG++ P D C +QRC+IL+ F+ FI+A+F EMV+K++A G+ GK+ YL + WNRLD FIV+AG E L + F + + INRVPS+RILVTLLLDTLPMLGNV +LC + +F I+GVQLW G+LRNRC L ++P+S+ L +YY ++ DE IC + S P L+ G + Y Y SN T C++WN +Y++C NP AI+FDN G A+IAIFQ +TLEGWVDIMY++ DA+S + +IYF+ LI++GS+F+ NLCLVV+ATQFSET+QRES LM E R + S T CY +LL + + ++ R L Q+S R R LL G+ QP
Sbjct: 29 GGRPGPGSAEKDPGSADSEAEGLPYPALAPVVFFYLSQDSRPRSWCLRTVCNPWFERISMLVILLNCVTLGMFRPCEDIACDSQRCRILQAFDDFIFAFFAVEMVVKMVALGIFGKKCYLGDTWNRLDFFIVIAGMLEYSLDLQNVSFSAVRTVRVLRPLRA-INRVPSMRILVTLLLDTLPMLGNVLLLCFFVFFIFGIVGVQLWAGLLRNRCFLPENFSLPLSVD-----LERYYQTENEDESPFICSQPRENGMRSCRSVPTLRGDGGGGPPCGLDYE------AYNSSSN---------TTCVNWNQYYTNCSAGEHNPFKGAINFDNIGYAWIAIFQVITLEGWVDIMYFVMDAHSFYNFIYFILLIIVGSFFMINLCLVVIATQFSETKQRESQLMREQRVR---FLSNASTLASFSEPGSCYEELLKYLVYILRKAARRLA---------QVS-RAAGVRVGLLSSPAPLGGQETQP 478 HSP 3 Score: 145.976 bits (367), Expect = 1.144e-34 Identity = 70/144 (48.61%), Postives = 96/144 (66.67%), Query Frame = 1
Query: 3748 THCIDWNMFYSSCKDFGLNPNFDAISFDNSGVAFIAIFQAMTLEGWVDIMYYLQDAYSSWVWIYFVALIVLGSYFLTNLCLVVVATQFSETRQRESALMEEARRKARXXXXXXXXXXXXXXNKGCYNQLLSIMKHYIQSGCRNL 4179
T C++WN +Y++C NP AI+FDN G A+IAIFQ +TLEGWVDIMY++ DA+S + +IYF+ LI++GS+F+ NLCLVV+ATQFSET+QRES LM E R + S T CY +LL + + ++ R L
Sbjct: 311 TTCVNWNQYYTNCSAGEHNPFKGAINFDNIGYAWIAIFQVITLEGWVDIMYFVMDAHSFYNFIYFILLIIVGSFFMINLCLVVIATQFSETKQRESQLMREQRVR---FLSNASTLASFSEPGSCYEELLKYLVYILRKAARRL 451 HSP 4 Score: 117.087 bits (292), Expect = 6.580e-26 Identity = 70/250 (28.00%), Postives = 127/250 (50.80%), Query Frame = 3
Query: 2838 LIVQFCESDCFKVSIMTAIFLNTVTMAMEHYRQPSSMTMALEIFNTIFTTVFLIEFVLKFTGYGFYGYIKNAFNVFDGIVVIISI-------IELAGS---RAGGVSVLRTFRLMRIFKLIRFLPTLQKQIQVMLETLDSVMTFLGLLTIFIFTSSILGMHLFGG-----KMKVDGVVVRHNFDDLLWSLITVFQVLTQEDWNAVLYDAMRS--------TTKWASVYFVLLMIIGNYILFNLLVAILVE 3518
L+ C S + I I LN VTMAMEHY+QP + AL+I N IFT +F++E V K +GF + ++ +N D +V++SI IE+ S + ++R R+ R+ KL++ ++ + +++ L V L + F + LG+ LFG +G+ F + + +T+F+V T ++WN ++ D +R T + +YFV ++ ++L N+++A+L++
Sbjct: 1603 LVHHLCTSHYLDLFITGVIGLNVVTMAMEHYQQPQILDEALKICNYIFTVIFVLESVFKLVAFGFRRFFQDRWNQLDLAIVLLSIMGITLEEIEVNASLPINPTIIRIMRVLRIARVLKLLKMAVGMRALLDTVMQALPQVGNLGLLFMLLFFIFAALGVELFGDLECDETHPCEGLGRHATFRNFGMAFLTLFRVSTGDNWNGIMKDTLRDCDQESTCYNTVISPIYFVSFVLTAQFVLVNVVIAVLMK 1852 HSP 5 Score: 89.3521 bits (220), Expect = 1.844e-17 Identity = 74/263 (28.14%), Postives = 135/263 (51.33%), Query Frame = 3
Query: 2868 FKVSIMTAIFLNTVTMAMEHYR-QP-SSMTMALEIFNTIFTTVFLIEFVLKFTGYGF----YGYIKNAFNVFDGIVVIISIIELAGSRAG--GVSVLRTFRLMRIFKLIRFLPTLQKQ--IQVMLETLDSVMTFLGLLTI----FIFTSSILGMHLFGGKM-------------KVDGVV-----VRH--NFDDLLWSLITVFQVLTQEDWNAVLYDAMRST----------TKWASVYFVLLMIIGNYILFNLLVAILVEGF 3524
F ++ IFLN +T+AME + P S+ + L + N IFT VFL E +K G+ Y+++++NV DG++V+IS+I++ S G +L R++R+ + +R L + + +++++ETL S + +G + + F ILG+ LF GK K D VRH NFD+L +L+++F + +++ W ++YD + + W +YF+ ++I + + N+ V ++VE F
Sbjct: 1278 FDHVVLVIIFLNCITIAMERPKIDPHSAERIFLTLSNYIFTAVFLAEMTVKVVALGWCFGEQAYLRSSWNVLDGLLVLISVIDILVSMVSDSGTKILGMLRVLRLLRTLRPLRVISRAQGLKLVVETLMSSLKPIGNIVVICCAFFIIFGILGVQLFKGKFFVCQGEDTRNITNKSDCAEASYRWVRHKYNFDNLGQALMSLFVLASKDGWVDIMYDGLDAVGVDQQPIMNHNPWMLLYFISFLLIVAFFVLNMFVGVVVENF 1540 The following BLAST results are available for this feature:
BLAST of TCONS_00015584 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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