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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015557 ID=TCONS_00015557|Name=TCONS_00015557|organism=Clytia hemisphaerica|type=transcript|length=1375bp
tttgtgtattttttagtAAAGAGATTAGTAGCCATTGGAAGATATGCGTA
TGCATATAAAAGTCCCCACTGATAAAAACAATTGATTAGCACGTAATCAA
AGCACTTACATTTTATGATGAAATTTATAAATACAAAAGTGATGAAACTT
CGTTGAAAATATATGAAACGAAATTGAccattatttataaaaaaatgctg
tCTATAACACACTTATCAACCAGCTTCTGAGGAGACAAGTAATAAATTTA
CAAGGAAAATCTTTCTTGACGGTGGTAAAGAAAAGGCCGCCTCGCTGCTA
TGGAGTGATAGGTGTGTTCAAATACATTTTCTAGCGTTGCCATCTTTCTT
CTTACAATCCACCTCACTTTTCCATTCTTTATAAGTTTTGTTCAAATAAG
CCACAGAATCGTGTGgcatttttgttttgacgttATTAAGCATAACCATT
TTTGGTGGTACCATTATGCTTCCATCGTACTTTGGACTTGAACTCTCATC
AAAATTGAACAGATTCTTCGAATCAATCTCATAAGCCCACATTCCTAGGC
CATTACCATTCGTTTTACTAAATTCCAAACTCATCCTTTTAGCACCTCTC
CAAGTCTGatgaaaaccaaatttttttgtcaaaacattCATTGCATCTTT
AAAAATTCCTGTTTTCCAGTGTTTCCAATCAACTACTAAATCAATGTCCT
CATCATAATGCAAAATACCTTTTGATCGAACATAACTGATAACATAACCT
CCAACGATCATATACGAAGCATTGTTTGCATTTAAATGGTTACTAACTTG
CTCTAAAGTTTGCATGAATTTCCTTCGACAGCAAGGGGGCATATCGATTC
TCATCTGGCGTTTATAATCATAAAATGGTCCTGGTTCACATTCTCGAGTG
TATTTTGTACATCCCAAAGAAGTGATCGCGCCATCTGTGTGGACAATCCA
TTTGACTCGTTTGTTAGCTCTTTTTAGCGTCTCGCCGTATTTCTTATATA
CCATAATCTCATCCTCAAGCAAACTCTCATAAAGATTATTACAAGTTGTA
TTCTCAAGTGAATGATTATATCTTGCTAGCTCGTAAAGTGTCCAATCTGC
AGGCGAGTATTTAAAAGTATTGCAAACCTCAAACGGCACTTCAGATTCGT
TCCGTAAAAGATTGTATTTGTCAGAAAAAGTCTGCTTGGATCGAgtaaaa
aacctcatttttggttTTAGGTTTGGTCTTTTGAGCATTGTAGTCCATCT
CGATGAATAAGACATTTTCCGCAGTATGATGAACATCCCAACAATGAATA
TTAACATCAGGTAACgtaaaaatttcattctttGTTCTACCATTTCATTC
TAGTTTGGTTTTCTCTTTATCTGAA Run BLAST on NCBI protein sequence of TCONS_00015557-protein >TCONS_00015557-protein ID=TCONS_00015557-protein|Name=TCONS_00015557-protein|organism=Clytia hemisphaerica|type=polypeptide|length=341bp
MVEQRMKFLRYLMLIFIVGMFIILRKMSYSSRWTTMLKRPNLKPKMRFFT
RSKQTFSDKYNLLRNESEVPFEVCNTFKYSPADWTLYELARYNHSLENTT
CNNLYESLLEDEIMVYKKYGETLKRANKRVKWIVHTDGAITSLGCTKYTR
ECEPGPFYDYKRQMRIDMPPCCRRKFMQTLEQVSNHLNANNASYMIVGGY
VISYVRSKGILHYDEDIDLVVDWKHWKTGIFKDAMNVLTKKFGFHQTWRG
AKRMSLEFSKTNGNGLGMWAYEIDSKNLFNFDESSSPKYDGSIMVPPKMV
MLNNVKTKMPHDSVAYLNKTYKEWKSEVDCKKKDGNARKCI Run BLAST on NCBI transcript from alignment at sc0000212:29103..30477 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00015557 ID=TCONS_00015557|Name=TCONS_00015557|organism=Clytia hemisphaerica|type=transcript|length=1375bp|location=Sequence derived from alignment at sc0000212:29103..30477 (Clytia hemisphaerica)
TTCAGATAAAGAGAAAACCAAACTAGAATGAAATGGTAGAACaaagaatg
aaatttttacGTTACCTGATGTTAATATTCATTGTTGGGATGTTCATCAT
ACTGCGGAAAATGTCTTATTCATCGAGATGGACTACAATGCTCAAAAGAC
CAAACCTAAaaccaaaaatgaggttttttacTCGATCCAAGCAGACTTTT
TCTGACAAATACAATCTTTTACGGAACGAATCTGAAGTGCCGTTTGAGGT
TTGCAATACTTTTAAATACTCGCCTGCAGATTGGACACTTTACGAGCTAG
CAAGATATAATCATTCACTTGAGAATACAACTTGTAATAATCTTTATGAG
AGTTTGCTTGAGGATGAGATTATGGTATATAAGAAATACGGCGAGACGCT
AAAAAGAGCTAACAAACGAGTCAAATGGATTGTCCACACAGATGGCGCGA
TCACTTCTTTGGGATGTACAAAATACACTCGAGAATGTGAACCAGGACCA
TTTTATGATTATAAACGCCAGATGAGAATCGATATGCCCCCTTGCTGTCG
AAGGAAATTCATGCAAACTTTAGAGCAAGTTAGTAACCATTTAAATGCAA
ACAATGCTTCGTATATGATCGTTGGAGGTTATGTTATCAGTTATGTTCGA
TCAAAAGGTATTTTGCATTATGATGAGGACATTGATTTAGTAGTTGATTG
GAAACACTGGAAAACAGGAATTTTTAAAGATGCAATGaatgttttgacaa
aaaaatttggttttcatCAGACTTGGAGAGGTGCTAAAAGGATGAGTTTG
GAATTTAGTAAAACGAATGGTAATGGCCTAGGAATGTGGGCTTATGAGAT
TGATTCGAAGAATCTGTTCAATTTTGATGAGAGTTCAAGTCCAAAGTACG
ATGGAAGCATAATGGTACCACCAAAAATGGTTATGCTTAATaacgtcaaa
acaaaaatgcCACACGATTCTGTGGCTTATTTGAACAAAACTTATAAAGA
ATGGAAAAGTGAGGTGGATTGTAAGAAGAAAGATGGCAACGCTAGAAAAT
GTATTTGAACACACCTATCACTCCATAGCAGCGAGGCGGCCTTTTCTTTA
CCACCGTCAAGAAAGATTTTCCTTGTAAATTTATTACTTGTCTCCTCAGA
AGCTGGTTGATAAGTGTGTTATAGacagcatttttttataaataatggTC
AATTTCGTTTCATATATTTTCAACGAAGTTTCATCACTTTTGTATTTATA
AATTTCATCATAAAATGTAAGTGCTTTGATTACGTGCTAATCAATTGTTT
TTATCAGTGGGGACTTTTATATGCATACGCATATCTTCCAATGGCTACTA
ATCTCTTTactaaaaaatacacaaa Coding sequence (CDS) from alignment at sc0000212:29103..30477 >TCONS_00015557 ID=TCONS_00015557|Name=TCONS_00015557|organism=Clytia hemisphaerica|type=CDS|length=1026bp|location=Sequence derived from alignment at sc0000212:29103..30477 (Clytia hemisphaerica)
ATGGTAGAACaaagaatgaaatttttacGTTACCTGATGTTAATATTCAT
TGTTGGGATGTTCATCATACTGCGGAAAATGTCTTATTCATCGAGATGGA
CTACAATGCTCAAAAGACCAAACCTAAaaccaaaaatgaggttttttacT
CGATCCAAGCAGACTTTTTCTGACAAATACAATCTTTTACGGAACGAATC
TGAAGTGCCGTTTGAGGTTTGCAATACTTTTAAATACTCGCCTGCAGATT
GGACACTTTACGAGCTAGCAAGATATAATCATTCACTTGAGAATACAACT
TGTAATAATCTTTATGAGAGTTTGCTTGAGGATGAGATTATGGTATATAA
GAAATACGGCGAGACGCTAAAAAGAGCTAACAAACGAGTCAAATGGATTG
TCCACACAGATGGCGCGATCACTTCTTTGGGATGTACAAAATACACTCGA
GAATGTGAACCAGGACCATTTTATGATTATAAACGCCAGATGAGAATCGA
TATGCCCCCTTGCTGTCGAAGGAAATTCATGCAAACTTTAGAGCAAGTTA
GTAACCATTTAAATGCAAACAATGCTTCGTATATGATCGTTGGAGGTTAT
GTTATCAGTTATGTTCGATCAAAAGGTATTTTGCATTATGATGAGGACAT
TGATTTAGTAGTTGATTGGAAACACTGGAAAACAGGAATTTTTAAAGATG
CAATGaatgttttgacaaaaaaatttggttttcatCAGACTTGGAGAGGT
GCTAAAAGGATGAGTTTGGAATTTAGTAAAACGAATGGTAATGGCCTAGG
AATGTGGGCTTATGAGATTGATTCGAAGAATCTGTTCAATTTTGATGAGA
GTTCAAGTCCAAAGTACGATGGAAGCATAATGGTACCACCAAAAATGGTT
ATGCTTAATaacgtcaaaacaaaaatgcCACACGATTCTGTGGCTTATTT
GAACAAAACTTATAAAGAATGGAAAAGTGAGGTGGATTGTAAGAAGAAAG
ATGGCAACGCTAGAAAATGTATTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00015557-exon-sc0000212-1491911889:29103..30477 | TCONS_00015557-exon-sc0000212-1491911889:29103..30477 | Clytia hemisphaerica | exon |
| TCONS_00015557-exon-sc0000212-1510915933:29103..30477 | TCONS_00015557-exon-sc0000212-1510915933:29103..30477 | Clytia hemisphaerica | exon |
| TCONS_00015557-exon-sc0000212-1575043694:29103..30477 | TCONS_00015557-exon-sc0000212-1575043694:29103..30477 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000212 | supercontig | sc0000212:29103..30477 . |
Blast
The following BLAST results are available for this feature:
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