|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015525 ID=TCONS_00015525|Name=TCONS_00015525|organism=Clytia hemisphaerica|type=transcript|length=2600bp
CAGTAAGAGACATGAACAAATATAAATCTCTCTTTAGCAATAAAATCGTC
CGTAGCACAGAAAGTACTTTTGAGAGTGAGACAAGTGAAGATATAAATAT
TCATCGTTTAGTTTATGATTTGATAAGTACATTTTGTGCACTGTTTCGTG
TTATTGATGAAGAAGGATGTACAAAAACCcaattcaaagaattttgtttg
tttttaccTTTCATTTTTGCATCGAACTTTTGACTACGAATTCAAGAGTC
AATAAATGTCTCATTGAAGAATTTCGACAAGTTCAACAACGAGAGGAAAT
TCTGAAGAAAGTTATTCAATCGTTTATTAATATGGCAACATATGAATCAT
TTTCCGATATTTACGAAGGAGCATCATTGACTGGAAGCCTCAATCAAGGA
ACATTTATCgcatcattttttaaagaaaatctgaAATACAAAGGGTCGGT
TATCACTAGACAGATTGACATTGATTGCTTGATGAATCTTAGACTAGATC
TGAAAAAACCCCGACAATGTCTGAgagaaataaaaggaaaaccGGGATAT
GTACAATTCCTGACCCGCTGTATACCAGATAAAGGAACTTGGTATGTTTT
TATCGAGAAAGCAACCAAATATATCCGACCAGTCATGTTTAAAAGCAAGG
TAAAGGATAGATTGAATGGTGCTGAATCAAACACCAAGGAAAAAGGAGTC
CAAGTTTTTTTTCTCTATCATTTCTTAAAACGAGGAATCATATTCAAAAG
TATAAATGTAAAGGTTTCCGGGAAAACAAGCAAATCTACTGTGaaacata
tttttgaaattcagaaaGATGAGAAACTTTACTTGACCACCGAGCTCGAT
TATGCTTTTATGTTTaaagtattttacagaccaaggGTCATGTTAAATTT
TCTAGCAAGGACACAATACAATGTTAGTAGAGAAATATCAGAATATATTT
ATGTCCTATCTAAAACATCACGCGAGCAAAAACACAACATCAATACAACA
GAATGGACTTATTCTTTCTCTCATATCGAGAATTTTATATTGAACTCTTT
TTCTGATGCAAAAAAACTTGTTTACGtgattttcaaatcaatatTCAGTA
AATCGTTAAAGTTTTTAGATGAAGAAATAGTAACTTCTTACATCGTCAAA
ACTATCGTTTTATGGAGATTTGAAGACAGCAATTTGATATACTTTGACGA
TTGGCTAAATGACACGAGGATTTGGGAGACGATTGACATTTTATTTACTG
ATTTACAAGAGGCTTTAAAAGAAGGctttttgaaagaatattttataCCA
GAAATCAATGTTCTCAAACGTTTTGACAAAAGTTTGAGAGACAATTGTCA
aaaacgaataaaaaatatccgaacaaatttgaaaacaatacTCCTTATTA
GTGAAATAAGCGAGGCAAGAAATATTCTTGAAGAGTTGTTGTTATTGTTC
TACGATGGTCAAACCTATCAAACTTTGGAGGCATTTGTCCATAATTTAGA
TCCTCCAATACACCATTATTCATTAttccattgaataattcctgctATAC
TACGGTTAATACGACGGtagcatttttttcaaattttgcttttaaaGTCG
TTCGaatatttatgtaatttatgtatttttttccgCCTCTAGCAGCCTCT
AGATATACAATAAAACATATAATCATAAGCTTTTGGGTGGGTTTACATCT
GTAAGAGAGAATCGATTACCACTCCCTTTGTTGATAACAATTCAGAATAT
AATCGAAACAAAagctgaaaatcctttttacgaattcttttattaccgta
aatcctcgaataagcacCCTGCTcaaataagcgccccccttttagttaaa
ataatattataagcgccccgctcgaataagcgcccccctttgaataagcg
ccccctccAGGAAGGGGCACTAATTcgaatattgttattgattgaataag
atattgaGTAGATAATTGggacttaaaaagaaagaaagcgattaaaggaa
ttatacggtgttatatacaccccactcgtctgaaactgatgtcagcaaaa
ttttaataaaagagtcctttcaaatttgtaaataaaaggaagaaaaaaat
cttgctccacatttttctttattcattacaaaagattctatttatttcaa
tctgctgaatcaacatacattataactatgtaaaaggtcaatggctttaa
gaataaaatgatagaaattgtcaattagatttttccaatttttcttttat
tcatccttttttgaaaaatcaacccgaatttgttgatatacaaatttctg
aaataaaaaaataagcgccccgctcgaataagcgccttGCTTGAATAAGC
ACCCCccttagagcctgaaaaattaaataagcgcccgggcgcttaatcGA
TGATTTACGGTAATCGGCCTTCCCCTCATTGAGTCCATTGTTACAAGAGG
TAGGTTTGGGTACCTCTTAGAACAAAGGACGTTAAGAGGAGAAGCTTCAT
CcaagatttgaaaagaaattgtaaaaacgATTTTTCCAATTCATTTTAAA
TAAGTAAAAAATTGGAACATGATTTCGATcatgattttttaatgaaaagt Run BLAST on NCBI transcript from alignment at sc0000212:403855..406756+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00015525 ID=TCONS_00015525|Name=TCONS_00015525|organism=Clytia hemisphaerica|type=transcript|length=2902bp|location=Sequence derived from alignment at sc0000212:403855..406756+ (Clytia hemisphaerica)
CAGTAAGAGACATGAACAAATATAAATCTCTCTTTAGCAATAAAATCGTC
CGTAGCACAGAAAGTACTTTTGAGAGTGAGACAAGTGAAGATATAAATAT
TCATCGTTTAGTTTATGATTTGATAAGTACATTTTGTGCACTGTTTCGTG
TTATTGATGAAGAAGGATGTACAAAAACCcaattcaaagaattttgtttg
tttttaccTTTCATTTTTGCATCGAACTTTTGACTACGAATTCAAGAGTC
AATAGTAAGTTTAAGAAATCCAATTTAACCTCTATTGTTTACACTGACAC
TTACACTAGTCAAGGAACCTGTTCATATTTTGAATCTCTAATTTTTCCTT
GGGACTTTATTACCTGTTTATTTTAATAATTTGTCAAAAACAAACATCCT
CTTTCTGAATGATGAAAGTAAGCAAGCCTCAAAATcctggattttttatt
caattagaCTTTGAAAAATATGCCGTCCAATATACATATTTTCAATACTT
GTTCTGAAAATGTTCTGCCTTTCTTAATAAAACAATTCTATTTTACACCC
TATTAGAATGTCTCATTGAAGAATTTCGACAAGTTCAACAACGAGAGGAA
ATTCTGAAGAAAGTTATTCAATCGTTTATTAATATGGCAACATATGAATC
ATTTTCCGATATTTACGAAGGAGCATCATTGACTGGAAGCCTCAATCAAG
GAACATTTATCgcatcattttttaaagaaaatctgaAATACAAAGGGTCG
GTTATCACTAGACAGATTGACATTGATTGCTTGATGAATCTTAGACTAGA
TCTGAAAAAACCCCGACAATGTCTGAgagaaataaaaggaaaaccGGGAT
ATGTACAATTCCTGACCCGCTGTATACCAGATAAAGGAACTTGGTATGTT
TTTATCGAGAAAGCAACCAAATATATCCGACCAGTCATGTTTAAAAGCAA
GGTAAAGGATAGATTGAATGGTGCTGAATCAAACACCAAGGAAAAAGGAG
TCCAAGTTTTTTTTCTCTATCATTTCTTAAAACGAGGAATCATATTCAAA
AGTATAAATGTAAAGGTTTCCGGGAAAACAAGCAAATCTACTGTGaaaca
tatttttgaaattcagaaaGATGAGAAACTTTACTTGACCACCGAGCTCG
ATTATGCTTTTATGTTTaaagtattttacagaccaaggGTCATGTTAAAT
TTTCTAGCAAGGACACAATACAATGTTAGTAGAGAAATATCAGAATATAT
TTATGTCCTATCTAAAACATCACGCGAGCAAAAACACAACATCAATACAA
CAGAATGGACTTATTCTTTCTCTCATATCGAGAATTTTATATTGAACTCT
TTTTCTGATGCAAAAAAACTTGTTTACGtgattttcaaatcaatatTCAG
TAAATCGTTAAAGTTTTTAGATGAAGAAATAGTAACTTCTTACATCGTCA
AAACTATCGTTTTATGGAGATTTGAAGACAGCAATTTGATATACTTTGAC
GATTGGCTAAATGACACGAGGATTTGGGAGACGATTGACATTTTATTTAC
TGATTTACAAGAGGCTTTAAAAGAAGGctttttgaaagaatattttataC
CAGAAATCAATGTTCTCAAACGTTTTGACAAAAGTTTGAGAGACAATTGT
CAaaaacgaataaaaaatatccgaacaaatttgaaaacaatacTCCTTAT
TAGTGAAATAAGCGAGGCAAGAAATATTCTTGAAGAGTTGTTGTTATTGT
TCTACGATGGTCAAACCTATCAAACTTTGGAGGCATTTGTCCATAATTTA
GATCCTCCAATACACCATTATTCATTAttccattgaataattcctgctAT
ACTACGGTTAATACGACGGtagcatttttttcaaattttgcttttaaaGT
CGTTCGaatatttatgtaatttatgtatttttttccgCCTCTAGCAGCCT
CTAGATATACAATAAAACATATAATCATAAGCTTTTGGGTGGGTTTACAT
CTGTAAGAGAGAATCGATTACCACTCCCTTTGTTGATAACAATTCAGAAT
ATAATCGAAACAAAagctgaaaatcctttttacgaattcttttattaccg
taaatcctcgaataagcacCCTGCTcaaataagcgccccccttttagtta
aaataatattataagcgccccgctcgaataagcgcccccctttgaataag
cgccccctccAGGAAGGGGCACTAATTcgaatattgttattgattgaata
agatattgaGTAGATAATTGggacttaaaaagaaagaaagcgattaaagg
aattatacggtgttatatacaccccactcgtctgaaactgatgtcagcaa
aattttaataaaagagtcctttcaaatttgtaaataaaaggaagaaaaaa
atcttgctccacatttttctttattcattacaaaagattctatttatttc
aatctgctgaatcaacatacattataactatgtaaaaggtcaatggcttt
aagaataaaatgatagaaattgtcaattagatttttccaatttttctttt
attcatccttttttgaaaaatcaacccgaatttgttgatatacaaatttc
tgaaataaaaaaataagcgccccgctcgaataagcgccttGCTTGAATAA
GCACCCCccttagagcctgaaaaattaaataagcgcccgggcgcttaatc
GATGATTTACGGTAATCGGCCTTCCCCTCATTGAGTCCATTGTTACAAGA
GGTAGGTTTGGGTACCTCTTAGAACAAAGGACGTTAAGAGGAGAAGCTTC
ATCcaagatttgaaaagaaattgtaaaaacgATTTTTCCAATTCATTTTA
AATAAGTAAAAAATTGGAACATGATTTCGATcatgattttttaatgaaaa
gt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00015525-exon-sc0000212-1491911889:403855..404108 | TCONS_00015525-exon-sc0000212-1491911889:403855..404108 | Clytia hemisphaerica | exon |
| TCONS_00015525-exon-sc0000212-1510915933:403855..404108 | TCONS_00015525-exon-sc0000212-1510915933:403855..404108 | Clytia hemisphaerica | exon |
| TCONS_00015525-exon-sc0000212-1575043694:403855..404108 | TCONS_00015525-exon-sc0000212-1575043694:403855..404108 | Clytia hemisphaerica | exon |
| TCONS_00015525-exon-sc0000212-1491911889:404411..406756 | TCONS_00015525-exon-sc0000212-1491911889:404411..406756 | Clytia hemisphaerica | exon |
| TCONS_00015525-exon-sc0000212-1510915933:404411..406756 | TCONS_00015525-exon-sc0000212-1510915933:404411..406756 | Clytia hemisphaerica | exon |
| TCONS_00015525-exon-sc0000212-1575043694:404411..406756 | TCONS_00015525-exon-sc0000212-1575043694:404411..406756 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000212 | supercontig | sc0000212:403855..406756 + |
Blast
The following BLAST results are available for this feature:
|
