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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015524 ID=TCONS_00015524|Name=TCONS_00015524|organism=Clytia hemisphaerica|type=transcript|length=1878bp
CAGAAATGTAACATGTAATATGTAACAAGGCATTTGTGTCTTTCATAAAA
GATGGAAGTTTTGACTATTCAGAGGATactatttgtttttgttttctgtt
ttcaaGTTGAGTTTTTAACTAAAAATTCAGGAATTAAATCACAACTTGAA
GAATTTCGACGAGCTCAAAAACGTGAAGAAACTCTAAAAGAAAAGATCAC
AACACTTGTTTCCAAAATCAAACAAGATTCACAATCAAACTTCATGGTGC
GTATTTTGGGAGAAATATTATTAACTGGAAGCCTCAATCAAGGAACATTT
ATCGCATCattgtttaaagaaaatttgaaatacaaaGGTTCGCTTATCAA
CAGAGATATTGATATTGATTGCAAAGCAATTGCAATTGATTTGAGGCTGA
ACCAAAACTGTCTGAAAGATATCAATGGAAAACCAGGATATGTAGAGTTA
TTGACCAATTGTATACCGGAAGAAGAAGTTTGGTATCGTTATTTCGAAAA
GGAAACCAAATATCTTCAACCAGTTCTGTTCAAAAACAAAGTTTCGAATA
GTTTTAATGGACCGTCATCAAACGCCAAGGAAAGAGTTTCGATTGTCTTC
CTTCACTATCATTTCTTAAAACGAGGAATCATATTCAAAAGTATAAATGT
AAAGGTTTCCGGGAAAACAAGCAAAGCTACTGTGaaacatatttttgaaa
tccAGAAAGATGAGAAACtttacatgaatttcgaaattgaTTATGCtttt
atgtttaaaatattctttaggCCAAATATTAtgtcaaattttctcaaaag
aaCAAGGTACAACTTGAGTGAAGAAATAATACAATATATCTATGTTCTAG
CTAAAACATCACGCGAGCAAAAACACAACATCAATACAACAGAATGGACT
TATTCTTTCTCTCATATCGAGAATTTTATATTGAACTCATTTTCTGACAC
ACAAAAACTTGTTTACGTGATTTTCAAATCGATATTCAACAAATCGCTAA
AGCATTTAGATGAAGACAAATTAACTTCATACATCGTCAAAACTATCATT
TTATGGAGATTTGAAGACATCGAATTGGACGACTCGGACGATTGGCTAAA
TGACACGAGGATTTGGGAAACGGCtgacattttattcaaagatttaATCG
TTTCATTTGATAGAGGCTTTCTAAAACATTATTTTATTCCAGAGGTCAAT
GTTCTTCAGAGATTAGACACAGATTTGAGGGACAGCTGTCGCAGGCGAAT
TAAAGAAATCGGAAAAGATCTGAAAAAAGTATTGCTTACAAACGAGGTAG
CTGAAGCAAGAAATTTTCTAGAAGAAGTGATGCACCTACTTCATGATCGA
GAACATATCTTACAACTGGAAAAGTTAAAAAGTAGTATGTTAAAGCATTA
ACTTAATTTAAATAACATAATTTGTCAAAACTTTaaacattgttttcaaa
taattGTGAGTTTGCAATCACAATTCAACATTGGCAGTTGGATCAACCGT
TAATTAACTAAGTATGAACctataatgttttttttcatttaatagCATCT
CAAGATCCCATATcgataaatttttatttcattttagttAAAGAAGGGTT
TAGATTACAAGGACTATTTTTCAAGACTATTGAGtatatgtatgtgtgtt
tttctgtgacggagacggtaaggttctaatttgactagatcatgaccaac
tgaggacgacggtaaatcagcacttttaccgtccttgattttgcgggtca
gaagtgcagattattccaaatcgcttcagtcactctaccgtacTCAAAag
agcaaatacataaactcgctattgttaAAGCTACACCAGCGTACTACAAC
CAGTTTATTTAAATTTCCAGTTGTCGAA Run BLAST on NCBI transcript from alignment at sc0000212:401201..410827+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00015524 ID=TCONS_00015524|Name=TCONS_00015524|organism=Clytia hemisphaerica|type=transcript|length=9627bp|location=Sequence derived from alignment at sc0000212:401201..410827+ (Clytia hemisphaerica)
CAGAAATGTAACATGTAATATGTAACAAGGCATTTGTGTCTTTCATAAAA
GATGGAAGTTTTGACTATTCAGAGGATactatttgtttttgttttctgtt
ttcaaGTTGAGTTTTTAACTAAAAATTCAGGAATTAGTAAgtatttttaa
atattcaatCAAATTTGACTGCACCCATCCTTCCGATCTTTCGCTATTCC
CTATCCTAGTGTATTTGTATTTGTATAGGGTTTTGTCGATTTTTATATCA
ATCTCGCATTTTtatgtaacaaaagaaaaacattataCCATTTTTAGTCA
TTCCATGTGTATGTAaggaaaatataaataaaaagctGGTTAAAGAAGAG
CTAGCAAATTTTAGTTTaggcttcttttttttaaatcacaacTTATAATA
TATAAAGAGGGAATTAGGTCTATTTCTTATATAAAATTGGACACTAGAAT
TAAATGATGGTAGGAGTTAATTGAAATTATTTATTAACCATTTAAGGAGT
GATATACGATATGCCTCATCATCGCGTTCCGTGCCAAAAATACTCCTAAT
AAGATATCCCGTCATCGCATGTCATGCCAAAAATACTGATGCCGAGATAT
TTTGCGATGGCGCTATGTTCACACAATACCGCGGTTATTGAAAAAGTGTC
ATCTGATATACCGAAAGAAAGTAAATCTAAATTGATCGTTAAAAACTAAT
GGTTTGGCATACAGGAAAACTGGgagccgggaggcgggaggctgaaccgg
gagctGGGAGttgggaggctgaaatcgaaagtgggaggtgGGAGACGGGA
GGCTAAACCGGGagactgaaaacgaaagttggaggcgggaggctgaaaac
gaaagtgggaggcgggaggctgaaattgaaagtgggaggcaggaggctga
aaacgaaagtgggaggcgggaggcgggaggcggNCTGCTCCCAGTTTTCC
TGTATGCCAATGGTTTTACGTTTATAGTTTTAGTTCTAAGGGAAGTAAAA
CAAGACGAATTGAAGTCGAAAATTACGCCTTAAGTTTAAACCtcatggga
aaaacaagaagtagagatggaagctaatctgaaatccaCTTTACAttgag
ccttgatgaaacaattttatatgaacaacaaggctcaaaatcgctaaaaa
gaaaAGACCATTTTTAGAACAATGGTTGTTTAActcttaagaactaataa
ctgaagggtatatcaccgtctataaagagtttttaatttgattcttataa
agtatatgcttataagaaaaataaatatgctcatattgcgccccatccct
tgtttactttgtaagaactaattaccgaaaggtatatcaccgtctatcaa
gagttattgatttgaNGAGGCTGAAATCGAAGGTGATAGGCTGAAAACGA
GTAGAAGAAAGGCCGAAAGCGAGAACTAAGTcgcaaagataaacaaaatc
ttGTGAAGATAAACAAAGACAACAGTTTAAAAACACTCTCACGAGTTCCG
TATCGTTTGTTAGTATACGctttttcaattataataaGGAACCTTACGGA
GCCTGGAGTATGTAATNCGcctgccatctcttgtttactttgtaaaaact
aattaccgaaggctatatcaccgtctatcaagagtttttaatttgattct
tataaagtaaatgcttataagaaaaatgaatatgctcatattgtgcacca
tcccttgtttactttgaaagaactaattaccgaaaggctatatcaccgtc
tatcaagaattattgatttgattcttataaagtataaaaaaatgaagaaa
aaaatcacaaagatatacgacgtaatccaaagaaaacccgcaaAAATCGT
ctgtggttatacgagcgtgtaatttgtaaattaaatttagtgagttcgtc
caccgtatcaagtactttcgtttccaaatttttttaagtatttccttttt
cgagcaaaaataaaattcaacaCTACACTAAATGACATAAATTAAACTCG
AAGTCTTTTTTAAAATGAATGTGTATTTAATAGTTTAGTACTAAAGTCGT
AAAAATACAGTCATGAATAAGCCGTTGTGATCAGTTAAAAAAATCGCAGT
ATCATAGGCACGGATACATAAAAATACAGTCGTTAAAGGGTCAAAAAAgg
tttaagaaatattttcgcCTGAAGTCATTTTGTTTTTCAGTTATGGTAAC
AAAACCCCACTGGACTCTGACGAAATATTTCGTCATTCAGTTGCAAACCC
CCAAACAAGATAATGTCTAATGACGAGATAATTCTTTTCGGCTCGGCTCG
TGAAAAAGCCATTGTATTTTAAGAACTGTCAGTTAAAAAACTCGCATTAT
TATAGGCACAgacaaataaaaagacacacTCGTTGAAGGGTCAAGTTTAA
GAAATCTAATCTAAGTAAAAATAGTCTCCCTATCACGtttattttatata
agaacaaactatataagaacataagggttCGATGGCCAAATACAAGTTca
gaaacattttaaggctttgcagagtATAAAACACCAGATTAATCCAAAAa
ttgttggatgttcttatgataAAATAACGCATAAACTTACTGATAATCTA
CTCTAGCTTAAAAggatcttttaaaaacttttgattGATTTCTTCTGAGC
TAATCAGTAAGAGACATGAACAAATATAAATCTCTCTTTAGCAATAAAAT
CGTCCGTAGCACAGAAAGTACTTTTGAGAGTGAGACAAGTGAAGATATAA
ATATTCATCGTTTAGTTTATGATTTGATAAGTACATTTTGTGCACTGTTT
CGTGTTATTGATGAAGAAGGATGTACAAAAACCcaattcaaagaattttg
tttgtttttaccTTTCATTTTTGCATCGAACTTTTGACTACGAATTCAAG
AGTCAATAGTAAGTTTAAGAAATCCAATTTAACCTCTATTGTTTACACTG
ACACTTACACTAGTCAAGGAACCTGTTCATATTTTGAATCTCTAATTTTT
CCTTGGGACTTTATTACCTGTTTATTTTAATAATTTGTCAAAAACAAACA
TCCTCTTTCTGAATGATGAAAGTAAGCAAGCCTCAAAATcctggattttt
tattcaattagaCTTTGAAAAATATGCCGTCCAATATACATATTTTCAAT
ACTTGTTCTGAAAATGTTCTGCCTTTCTTAATAAAACAATTCTATTTTAC
ACCCTATTAGAATGTCTCATTGAAGAATTTCGACAAGTTCAACAACGAGA
GGAAATTCTGAAGAAAGTTATTCAATCGTTTATTAATATGGCAACATATG
AATCATTTTCCGATATTTACGAAGGAGCATCATTGACTGGAAGCCTCAAT
CAAGGAACATTTATCgcatcattttttaaagaaaatctgaAATACAAAGG
GTCGGTTATCACTAGACAGATTGACATTGATTGCTTGATGAATCTTAGAC
TAGATCTGAAAAAACCCCGACAATGTCTGAgagaaataaaaggaaaaccG
GGATATGTACAATTCCTGACCCGCTGTATACCAGATAAAGGAACTTGGTA
TGTTTTTATCGAGAAAGCAACCAAATATATCCGACCAGTCATGTTTAAAA
GCAAGGTAAAGGATAGATTGAATGGTGCTGAATCAAACACCAAGGAAAAA
GGAGTCCAAGTTTTTTTTCTCTATCATTTCTTAAAACGAGGAATCATATT
CAAAAGTATAAATGTAAAGGTTTCCGGGAAAACAAGCAAATCTACTGTGa
aacatatttttgaaattcagaaaGATGAGAAACTTTACTTGACCACCGAG
CTCGATTATGCTTTTATGTTTaaagtattttacagaccaaggGTCATGTT
AAATTTTCTAGCAAGGACACAATACAATGTTAGTAGAGAAATATCAGAAT
ATATTTATGTCCTATCTAAAACATCACGCGAGCAAAAACACAACATCAAT
ACAACAGAATGGACTTATTCTTTCTCTCATATCGAGAATTTTATATTGAA
CTCTTTTTCTGATGCAAAAAAACTTGTTTACGtgattttcaaatcaatat
TCAGTAAATCGTTAAAGTTTTTAGATGAAGAAATAGTAACTTCTTACATC
GTCAAAACTATCGTTTTATGGAGATTTGAAGACAGCAATTTGATATACTT
TGACGATTGGCTAAATGACACGAGGATTTGGGAGACGATTGACATTTTAT
TTACTGATTTACAAGAGGCTTTAAAAGAAGGctttttgaaagaatatttt
ataCCAGAAATCAATGTTCTCAAACGTTTTGACAAAAGTTTGAGAGACAA
TTGTCAaaaacgaataaaaaatatccgaacaaatttgaaaacaatacTCC
TTATTAGTGAAATAAGCGAGGCAAGAAATATTCTTGAAGAGTTGTTGTTA
TTGTTCTACGATGGTCAAACCTATCAAACTTTGGAGGCATTTGTCCATAA
TTTAGATCCTCCAATACACCATTATTCATTAttccattgaataattcctg
ctATACTACGGTTAATACGACGGtagcatttttttcaaattttgctttta
aaGTCGTTCGaatatttatgtaatttatgtatttttttccgCCTCTAGCA
GCCTCTAGATATACAATAAAACATATAATCATAAGCTTTTGGGTGGGTTT
ACATCTGTAAGAGAGAATCGATTACCACTCCCTTTGTTGATAACAATTCA
GAATATAATCGAAACAAAagctgaaaatcctttttacgaattcttttatt
accgtaaatcctcgaataagcacCCTGCTcaaataagcgcccccctttta
gttaaaataatattataagcgccccgctcgaataagcgcccccctttgaa
taagcgccccctccAGGAAGGGGCACTAATTcgaatattgttattgattg
aataagatattgaGTAGATAATTGggacttaaaaagaaagaaagcgatta
aaggaattatacggtgttatatacaccccactcgtctgaaactgatgtca
gcaaaattttaataaaagagtcctttcaaatttgtaaataaaaggaagaa
aaaaatcttgctccacatttttctttattcattacaaaagattctattta
tttcaatctgctgaatcaacatacattataactatgtaaaaggtcaatgg
ctttaagaataaaatgatagaaattgtcaattagatttttccaatttttc
ttttattcatccttttttgaaaaatcaacccgaatttgttgatatacaaa
tttctgaaataaaaaaataagcgccccgctcgaataagcgccttGCTTGA
ATAAGCACCCCccttagagcctgaaaaattaaataagcgcccgggcgctt
aatcGATGATTTACGGTAATCGGCCTTCCCCTCATTGAGTCCATTGTTAC
AAGAGGTAGGTTTGGGTACCTCTTAGAACAAAGGACGTTAAGAGGAGAAG
CTTCATCcaagatttgaaaagaaattgtaaaaacgATTTTTCCAATTCAT
TTTAAATAAGTAAAAAATTGGAACATGATTTCGATcatgattttttaatg
aaaagtacgcaaatgatttttttaatcaagcTATAATATACAGCATGAGC
TTGTATGGTGTAGATGTACATAGTTGAATGAATAGAGAAAAACCATACTT
GCATTCCGTAATAAAAATTCAACCAATGAGATAACTTAGGGAAAATCaat
tataaatcaaaaaaggaaatcgtgatgaaatcaaaagaaatcgtaATTCT
CTATTGTAATTCTTAATCGATTCTCTCCTAGATGTAAACACATCTTTTAT
AACTAgcttttacctattgaatatctgcttattagtCAGCCCAGGTgact
cttcaaatcggttcgacgatttttttcccgctggtcgtcgtcgttaagac
tttaagttttaattccgatttcggattattttcgggaaaCAGGATTTCGG
AATTACTTAGcgcgcgaaaataattttttcttagtaaGATAAAATAGGAC
GAGAAAAAAACACATAACATAAAAAGACGCGTATAATtaagaataagaaa
aaaaggaaaaagattcttttttgcgTCATATTCAATGATTCAATAGTTAA
TAAAAGATActtttgcattgtaaataaagaaaGAGAACTAATTATAATGA
AAGTGAGTATTAAAGAAATTACTTTTCTTTGAATAATGTTAAGTTGTATA
CTACTTGTAGAAATTCTTCTATTTGggtcttttattttattgtcaTGACA
AGACACCCGTCgagtgttttttataatctgatatcTCTGATATAAACTAG
ACAGGTTCGAGCCGTGAGTCCAATTTTGGACTCGCATTTTTAACAGTTGA
ACAAGCGCAGGACTCACTCACTGAATAAAAACGAGTAAACGACTGGACCA
CAAAAAATCGCGCTTTTTTCTGAGGCAGTTTGAAAAGAGAAACTAAAACA
AGCTTTCATTGGCTAATTCACCAACTGTCATTTTGAGGagcgaaattcaa
attcaaaacagCAATGGAATTAATTTGTTTCGCCGACTTCTGCTTTGGAC
GGATCCCACTATGCACCACTACTTTTTCGTCTGAACGTTTCAACTCAAGC
AAATAGATACGCTCTTTGAAACtgttcagattttaaaaaagctagatttc
ttttttgtacttctaagccttctaagccttttgggctgactttccagcgc
agctggtttattgttCAATTATATCCACCTGAGAATATTTAGGTAAGTAA
GGTAGTTTTAAATTTCGTGCTTTATATAAGGATAATTGGTCAAAATAGGG
TGCTGTGTTTTTGTTGGTTTTTCGATCATCGCAAGTTTCTCCAATGgtta
aaaaacaacaataagtcaaaataatttccctataggtctttttttaaatc
tttcacTGTCTCTAATCTTTTAAGGTCTCTAACAGTAAGAAAACGATAAG
CTATCTAAAAATTAGGGAGAGATTTTTCGAACAATTTTCTAAGAGTTCTC
TAGCCAGTTAAAAGACGACCAACGTTTGGAAATTTCTATATTTACATGGA
TTGCTTGTTtgctaattttattttttgacctGTTGGCGTGCAGTTCGTAG
TATTTCAATACTTCAATACTCATCGAAGTTTAAAGATTGGAGAATACCGG
ACATGTACTGATAGGTCCTCTGAACCCTAATCTTTGAGAGATTCTTTTTA
GCGAAAAGAGAACTCTTAGAAAGATGATTTTGAAATGAGAAATATTTATG
AAAAGACTGTCATTGGATTTCTATCATAAgagtataaaaaaacaaaaaaa
catcgCAATTCATAAATCTGATTAAAACTGCAGTTTTATCAGTCAATAAG
ATCCTTTTGAAActcttttttgataaatttgaaaagtCTAATACAACAGA
AATGTAACATGTAATATGTAACGAAGCGCTTATGTCATTCAAAAAAGATG
GAAGTTTTAACTATTCAgaggattttttttgttttgtgttttcaAGTTCA
GTTTTtaactaaaaatttagaaattagtaagtatttttaaatattcaatC
AAATTTGACTGCATCCTTCCGATCTTTCGTTATTCCCTATCCTAGTCTGT
ATTTGTAAATGGAACGTGGCTTGATCGTGAAAGAATTTTTACAACGTCGT
CAATTCGTATAAATTAGTATTGGTACTACTATAAATTCTAGCAtaattca
aatcaaataaaaatggtagaggGTTTTGTCGACTTTTTGTATCAATCTCG
CATTTTTATGTAACAAAAGGAAAACATTATACTATTTTTAGTCATTCCAT
GTGTATCTTaggaaaatataaataaaaaagctgGTTTTCAAGGAGAACTA
GCAAGTTTTAGTTTACACTTTGGCTTTTTATTTAGAATCACAACTTGAAG
AATTTCGACGAGCTCAAAAACGTGAAGAAACTCTAAAAGAAAAGATCACA
ACACTTGTTTCCAAAATCAAACAAGATTCACAATCAAACTTCATGGTGCG
TATTTTGGGAGAAATATTATTAACTGGAAGCCTCAATCAAGGAACATTTA
TCGCATCattgtttaaagaaaatttgaaatacaaaGGTTCGCTTATCAAC
AGAGATATTGATATTGATTGCAAAGCAATTGCAATTGATTTGAGGCTGAA
CCAAAACTGTCTGAAAGATATCAATGGAAAACCAGGATATGTAGAGTTAT
TGACCAATTGTATACCGGAAGAAGAAGTTTGGTATCGTTATTTCGAAAAG
GAAACCAAATATCTTCAACCAGTTCTGTTCAAAAACAAAGTTTCGAATAG
TTTTAATGGACCGTCATCAAACGCCAAGGAAAGAGTTTCGATTGTCTTCC
TTCACTATCATTTCTTAAAACGAGGAATCATATTCAAAAGTATAAATGTA
AAGGTTTCCGGGAAAACAAGCAAAGCTACTGTGaaacatatttttgaaat
ccAGAAAGATGAGAAACtttacatgaatttcgaaattgaTTATGCtttta
tgtttaaaatattctttaggCCAAATATTAtgtcaaattttctcaaaaga
aCAAGGTACAACTTGAGTGAAGAAATAATACAATATATCTATGTTCTAGC
TAAAACATCACGCGAGCAAAAACACAACATCAATACAACAGAATGGACTT
ATTCTTTCTCTCATATCGAGAATTTTATATTGAACTCATTTTCTGACACA
CAAAAACTTGTTTACGTGATTTTCAAATCGATATTCAACAAATCGCTAAA
GCATTTAGATGAAGACAAATTAACTTCATACATCGTCAAAACTATCATTT
TATGGAGATTTGAAGACATCGAATTGGACGACTCGGACGATTGGCTAAAT
GACACGAGGATTTGGGAAACGGCtgacattttattcaaagatttaATCGT
TTCATTTGATAGAGGCTTTCTAAAACATTATTTTATTCCAGAGGTCAATG
TTCTTCAGAGATTAGACACAGATTTGAGGGACAGCTGTCGCAGGCGAATT
AAAGAAATCGGAAAAGATCTGAAAAAAGTATTGCTTACAAACGAGGTAGC
TGAAGCAAGAAATTTTCTAGAAGAAGTGATGCACCTACTTCATGATCGAG
AACATATCTTACAACTGGAAAAGTTAAAAAGTAGTATGTTAAAGCATTAA
CTTAATTTAAATAACATAATTTGTCAAAACTTTaaacattgttttcaaat
aattGTGAGTTTGCAATCACAATTCAACATTGGCAGTTGGATCAACCGTT
AATTAACTAAGTATGAACctataatgttttttttcatttaatagCATCTC
AAGATCCCATATcgataaatttttatttcattttagttAAAGAAGGGTTT
AGATTACAAGGACTATTTTTCAAGACTATTGAGtatatgtatgtgtgttt
ttctgtgacggagacggtaaggttctaatttgactagatcatgaccaact
gaggacgacggtaaatcagcacttttaccgtccttgattttgcgggtcag
aagtgcagattattccaaatcgcttcagtcactctaccgtacTCAAAaga
gcaaatacataaactcgctattgttaAAGCTACACCAGCGTACTACAACC
AGTTTATTTAAATTTCCAGTTGTCGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00015524-exon-sc0000212-1491911889:401201..401336 | TCONS_00015524-exon-sc0000212-1491911889:401201..401336 | Clytia hemisphaerica | exon |
| TCONS_00015524-exon-sc0000212-1510915933:401201..401336 | TCONS_00015524-exon-sc0000212-1510915933:401201..401336 | Clytia hemisphaerica | exon |
| TCONS_00015524-exon-sc0000212-1575043694:401201..401336 | TCONS_00015524-exon-sc0000212-1575043694:401201..401336 | Clytia hemisphaerica | exon |
| TCONS_00015524-exon-sc0000212-1491911889:409086..410827 | TCONS_00015524-exon-sc0000212-1491911889:409086..410827 | Clytia hemisphaerica | exon |
| TCONS_00015524-exon-sc0000212-1510915933:409086..410827 | TCONS_00015524-exon-sc0000212-1510915933:409086..410827 | Clytia hemisphaerica | exon |
| TCONS_00015524-exon-sc0000212-1575043694:409086..410827 | TCONS_00015524-exon-sc0000212-1575043694:409086..410827 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000212 | supercontig | sc0000212:401201..410827 + |
Blast
The following BLAST results are available for this feature:
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