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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015520 ID=TCONS_00015520|Name=TCONS_00015520|organism=Clytia hemisphaerica|type=transcript|length=1238bp
AACGAATCCCTGAAAACAAGCCTCAATGAAGACAAAGTCTCTCGCAACGA
ATCCCTGAAAAAAAGCCTCAATGAAGACAAAGTCTCTCGCAACGAATCCC
TGAAAACAAGCCTCAATGAAGACAAAGTCTCTCGCAACGAATCCCTGAAA
ACAAGCCTTAATGAAGACAAAGTCTCTCGCAACGAATCCCTGAAAACAAG
CCTCAATGAAGACAAAGTCTCTCGCAACGAATCCCTGAAAAAAAGCCTCA
ATGAAGACAAAGTCTCTCGCAACGAATCCCTGAAAACAAGCCTCAATGAA
GACAAAGTCTCTCGCAACGAATCCCTGAAAACAAGCCTCAATGAAGACAA
AATCCCTAAAACAGACTTCTTGAGAATCGACGCCAAGGAGGAGCTGGTAA
ACGGCGAAAGGAAAGTTACCAATTGTGATATGGAAACACCAGCTCATTcc
aagaaaatggacaaaatcaaAGCAAATAAATTTGAACAGAATGGTAGCtt
ggaaataaaaaaagcaTTAGCAGAATCGTTGGAGTGCAACAAACAACTTA
TTACCGACAAACTAAAATTGCAAGAGGAACTCGCAAAACTGAGaaagaaa
aatgacaaaactgTAAAAGAAAATGCAGTTCTATCCATCTACAACAAGAT
CAAatggaaaatattccaaaaaaatggGCGAAAAGTCGCTGAAATGGAAG
AACGAATCAAAGTATTGGAGAAAAAGCTCGTGGAGAAGAACCGCTTATTA
GGCTGCTTAGAAAACCACAGCGAACCAGGGAGAGATGCTGAAAGAGTTGT
GGATAAAATAAACCAAGAGATTGGTGGAGAAGTCGATGTGGCTAGCATAA
GAAAACGATTAGGTCCTGTAATCAATTATGCTCTCTCAGATGACGAGTGC
GACGATGTTCCCATAGAAAACGTCATGGGCCATTGGGTACAAAACGATAA
CGAGCAGgATTCAAAGAAGATGAAACAAATGAGTGTAGACTTATCCGAAG
GAAAAGCTCATTTCATTCGATTGAAACGCAAGTACGAAGTGATCGATAAC
GCCCTTCGAGAGACCAAATTGAGAAACGAGCGTCTGGAATTGAAATATCA
AGCCGCCTGTCAAGAGCTTGAGGATCGTACTgcagaaaagaacaaaaaga
aaaccAGAGGTGGTGTCGCCAAGCGGCTACGGAACTTATTTGGATGCGCG
TCCACACGTAGCGCTGCAGATACCCAAGAACAGCCCCC Run BLAST on NCBI protein sequence of TCONS_00015520-protein >TCONS_00015520-protein ID=TCONS_00015520-protein|Name=TCONS_00015520-protein|organism=Clytia hemisphaerica|type=polypeptide|length=412bp
NESLKTSLNEDKVSRNESLKKSLNEDKVSRNESLKTSLNEDKVSRNESLK
TSLNEDKVSRNESLKTSLNEDKVSRNESLKKSLNEDKVSRNESLKTSLNE
DKVSRNESLKTSLNEDKIPKTDFLRIDAKEELVNGERKVTNCDMETPAHS
KKMDKIKANKFEQNGSLEIKKALAESLECNKQLITDKLKLQEELAKLRKK
NDKTVKENAVLSIYNKIKWKIFQKNGRKVAEMEERIKVLEKKLVEKNRLL
GCLENHSEPGRDAERVVDKINQEIGGEVDVASIRKRLGPVINYALSDDEC
DDVPIENVMGHWVQNDNEQDSKKMKQMSVDLSEGKAHFIRLKRKYEVIDN
ALRETKLRNERLELKYQAACQELEDRTAEKNKKKTRGGVAKRLRNLFGCA
STRSAADTQEQP Run BLAST on NCBI transcript from alignment at sc0000212:356687..359161+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00015520 ID=TCONS_00015520|Name=TCONS_00015520|organism=Clytia hemisphaerica|type=transcript|length=2475bp|location=Sequence derived from alignment at sc0000212:356687..359161+ (Clytia hemisphaerica)
AACGAATCCCTGAAAACAAGCCTCAATGAAGACAAAGTCTCTCGCAACGA
ATCCCTGAAAAAAAGCCTCAATGAAGACAAAGTCTCTCGCAACGAATCCC
TGAAAACAAGCCTCAATGAAGACAAAGTCTCTCGCAACGAATCCCTGAAA
ACAAGCCTTAATGAAGACAAAGTCTCTCGCAACGAATCCCTGAAAACAAG
CCTCAATGAAGACAAAGTCTCTCGCAACGAATCCCTGAAAAAAAGCCTCA
ATGAAGACAAAGTCTCTCGCAACGAATCCCTGAAAACAAGCCTCAATGAA
GACAAAGTCTCTCGCAACGAATCCCTGAAAACAAGCCTCAATGAAGACAA
AATCCCTAAAACAGACTTCTTGAGAATCGACGCCAAGGAGGAGCTGGTAA
ACGGCGAAAGGAAAGTTACCAATTGTGATATGGAAACACCAGCTCATTcc
aagaaaatggacaaaatcaaAGCAAATAAATTTGAACAGAATGGTAGCtt
ggaaataaaaaaagcaTTAGCAGAATCGTTGGAGTGCAACAAACAACTTA
TTACCGACAAACTAAAATTGCAAGAGGTAATTATATATTTTCGTTCTTTT
CTTAGAAGGTTAACTCTTAAGGTAGGGAAATATGACAAAGTTCTGTTGTG
CTGATTAGCTAAAGTGTGTCTCTACTTACAGtacatgcaaaaaaatcaga
gaaaattaatgatccaattgcattcgagggtttatagttatgcatctttg
tgcaaaaatcataaagaatgaatgagccaatctcgagaaaaaataatacc
taagtaattgataatgtgcttataaaaaaaatagaatttggccagttttt
ccataaaaacacgccaagcaaccaaaattttctgtctaaacacacatatt
tttcaaaagtaagctctcacgagcaaaaaaaacatcaatactcataaaaa
aattgagtaatttgactaagaacattgatgtatgcttattaacagtgatt
ctttttgcaaaaatctgcttggtCACATCATgatctactttcatgcaaaa
aaatctgaaaaaattaatgatccaatttttcacaaagtccaaaaaacccg
tttttagccgctttttgggccaaatttgcccaaaaaacttttttttcgaa
aatcgggctccgtcacattcgagggtttatagttatgcatctttgtgcaa
aaaatcataaagaatgaaagagccaatctcgagaaaagttggtaacgaac
gaacggacggacgaacagaggttaatttatagtaCCTCCACcgtggtagg
tccaaaaatagaATTCCGTTACTCGCTTATACGTCTTTGGATTTCGGTTC
TAGTTTTAGAGGGACCGcaattaaaatgataaaaattccaACCATTTCCT
TCTGGTTCGATTTGTAGGAACTCGCAAAACTGAGaaagaaaaatgacaaa
actgTAAAAGAAAATGCAGTTCTATCCATCTACAACAAGATCAAatggaa
aatattccaaaaaaatggGCGAAAAGTCGCTGAAATGGAAGAACGAATCA
AAGTATTGGAGAAAAAGCTCGTGGAGAAGAACCGCTTATTAGGCTGCTTA
GAAAACCACAGCGAACCAGGGAGAGATGCTGAAAGAGTTGTGGATAAAAT
AAACCAAGAGATTGGTGGAGAAGTCGATGTGGCTAGCATAAGAAAACGAT
TAGGTCCTGTAATCAATTATGCTCTCTCAGATGACGAGTGCGACGATGTT
CCCATAGAAAACGTCATGGGCCATTGGGTACAAAACGATAACGAGCAGGT
TAGTGGATTCACTTAGTTTTATTATTCGGAAGCGCTCTAACTAAGGTTGG
ACTAACTAAGGGCAGGgctttaactctgagttttaacattagacttaaga
tctgaggatccaaaagttcaagaatggtccaataaggctcagaatatagc
ctgaaagTCTAAAATCTCACTcaatttgaaatattcgattattacattta
acaaaaagaagaaTAGCCGATTGCTCGCCTGAACTTTTATCTTCTAAAAA
AgaggaaataaccaaaattctcaacatATTTTGACCAAGATTGTAGAGGG
GTGTGGCCCTTACCATGTTACAGACGCCAGAACGTAAAGAAAAATTCCCA
GTTCCCAGCGTAATCGAAAATAATtcatttcttcttttcaataggATTCA
AAGAAGATGAAACAAATGAGTGTAGACTTATCCGAAGGAAAAGCTCATTT
CATTCGATTGAAACGCAAGTACGAAGTGATCGATAACGCCCTTCGAGAGA
CCAAATTGAGAAACGAGCGTCTGGAATTGAAATATCAAGCCGCCTGTCAA
GAGCTTGAGGATCGTACTgcagaaaagaacaaaaagaaaaccAGAGGTGG
TGTCGCCAAGCGGCTACGGAACTTATTTGGATGCGCGTCCACACGTAGCG
CTGCAGATACCCAAGAACAGCCCCC Coding sequence (CDS) from alignment at sc0000212:356687..359161+ >TCONS_00015520 ID=TCONS_00015520|Name=TCONS_00015520|organism=Clytia hemisphaerica|type=CDS|length=3708bp|location=Sequence derived from alignment at sc0000212:356687..359161+ (Clytia hemisphaerica)
AACGAATCCCTGAAAACAAGCCTCAATGAAGACAAAGTCTCTCGCAACGA
ATCCCTGAAAAAAAGCCTCAATGAAGACAAAGTCTCTCGCAACGAATCCC
TGAAAACAAGCCTCAATGAAGACAAAGTCTCTCGCAACGAATCCCTGAAA
ACAAGCCTTAATGAAGACAAAGTCTCTCGCAACGAATCCCTGAAAACAAG
CCTCAATGAAGACAAAGTCTCTCGCAACGAATCCCTGAAAAAAAGCCTCA
ATGAAGACAAAGTCTCTCGCAACGAATCCCTGAAAACAAGCCTCAATGAA
GACAAAGTCTCTCGCAACGAATCCCTGAAAACAAGCCTCAATGAAGACAA
AATCCCTAAAACAGACTTCTTGAGAATCGACGCCAAGGAGGAGCTGGTAA
ACGGCGAAAGGAAAGTTACCAATTGTGATATGGAAACACCAGCTCATTcc
aagaaaatggacaaaatcaaAGCAAATAAATTTGAACAGAATGGTAGCtt
ggaaataaaaaaagcaTTAGCAGAATCGTTGGAGTGCAACAAACAACTTA
TTACCGACAAACTAAAATTGCAAGAGGAACTCGCAAAACTGAGaaagaaa
aatgacaaaactgTAAAAGAAAATGCAGTTCTATCCATCTACAACAAGAT
CAAatggaaaatattccaaaaaaatggGCGAAAAGTCGCTGAAATGGAAG
AACGAATCAAAGTATTGGAGAAAAAGCTCGTGGAGAAGAACCGCTTATTA
GGCTGCTTAGAAAACCACAGCGAACCAGGGAGAGATGCTGAAAGAGTTGT
GGATAAAATAAACCAAGAGATTGGTGGAGAAGTCGATGTGGCTAGCATAA
GAAAACGATTAGGTCCTGTAATCAATTATGCTCTCTCAGATGACGAGTGC
GACGATGTTCCCATAGAAAACGTCATGGGCCATTGGGTACAAAACGATAA
CGAGCAGgATTCAAAGAAGATGAAACAAATGAGTGTAGACTTATCCGAAG
GAAAAGCTCATTTCATTCGATTGAAACGCAAGTACGAAGTGATCGATAAC
GCCCTTCGAGAGACCAAATTGAGAAACGAGCGTCTGGAATTGAAATATCA
AGCCGCCTGTCAAGAGCTTGAGGATCGTACTgcagaaaagaacaaaaaga
aaaccAGAGGTGGTGTCGCCAAGCGGCTACGGAACTTATTTGGATGCGCG
TCCACACGTAGCGCTGCAGATACCCAAGAACAGCCCAACGAATCCCTGAA
AACAAGCCTCAATGAAGACAAAGTCTCTCGCAACGAATCCCTGAAAAAAA
GCCTCAATGAAGACAAAGTCTCTCGCAACGAATCCCTGAAAACAAGCCTC
AATGAAGACAAAGTCTCTCGCAACGAATCCCTGAAAACAAGCCTTAATGA
AGACAAAGTCTCTCGCAACGAATCCCTGAAAACAAGCCTCAATGAAGACA
AAGTCTCTCGCAACGAATCCCTGAAAAAAAGCCTCAATGAAGACAAAGTC
TCTCGCAACGAATCCCTGAAAACAAGCCTCAATGAAGACAAAGTCTCTCG
CAACGAATCCCTGAAAACAAGCCTCAATGAAGACAAAATCCCTAAAACAG
ACTTCTTGAGAATCGACGCCAAGGAGGAGCTGGTAAACGGCGAAAGGAAA
GTTACCAATTGTGATATGGAAACACCAGCTCATTccaagaaaatggacaa
aatcaaAGCAAATAAATTTGAACAGAATGGTAGCttggaaataaaaaaag
caTTAGCAGAATCGTTGGAGTGCAACAAACAACTTATTACCGACAAACTA
AAATTGCAAGAGGAACTCGCAAAACTGAGaaagaaaaatgacaaaactgT
AAAAGAAAATGCAGTTCTATCCATCTACAACAAGATCAAatggaaaatat
tccaaaaaaatggGCGAAAAGTCGCTGAAATGGAAGAACGAATCAAAGTA
TTGGAGAAAAAGCTCGTGGAGAAGAACCGCTTATTAGGCTGCTTAGAAAA
CCACAGCGAACCAGGGAGAGATGCTGAAAGAGTTGTGGATAAAATAAACC
AAGAGATTGGTGGAGAAGTCGATGTGGCTAGCATAAGAAAACGATTAGGT
CCTGTAATCAATTATGCTCTCTCAGATGACGAGTGCGACGATGTTCCCAT
AGAAAACGTCATGGGCCATTGGGTACAAAACGATAACGAGCAGgATTCAA
AGAAGATGAAACAAATGAGTGTAGACTTATCCGAAGGAAAAGCTCATTTC
ATTCGATTGAAACGCAAGTACGAAGTGATCGATAACGCCCTTCGAGAGAC
CAAATTGAGAAACGAGCGTCTGGAATTGAAATATCAAGCCGCCTGTCAAG
AGCTTGAGGATCGTACTgcagaaaagaacaaaaagaaaaccAGAGGTGGT
GTCGCCAAGCGGCTACGGAACTTATTTGGATGCGCGTCCACACGTAGCGC
TGCAGATACCCAAGAACAGCCCAACGAATCCCTGAAAACAAGCCTCAATG
AAGACAAAGTCTCTCGCAACGAATCCCTGAAAAAAAGCCTCAATGAAGAC
AAAGTCTCTCGCAACGAATCCCTGAAAACAAGCCTCAATGAAGACAAAGT
CTCTCGCAACGAATCCCTGAAAACAAGCCTTAATGAAGACAAAGTCTCTC
GCAACGAATCCCTGAAAACAAGCCTCAATGAAGACAAAGTCTCTCGCAAC
GAATCCCTGAAAAAAAGCCTCAATGAAGACAAAGTCTCTCGCAACGAATC
CCTGAAAACAAGCCTCAATGAAGACAAAGTCTCTCGCAACGAATCCCTGA
AAACAAGCCTCAATGAAGACAAAATCCCTAAAACAGACTTCTTGAGAATC
GACGCCAAGGAGGAGCTGGTAAACGGCGAAAGGAAAGTTACCAATTGTGA
TATGGAAACACCAGCTCATTccaagaaaatggacaaaatcaaAGCAAATA
AATTTGAACAGAATGGTAGCttggaaataaaaaaagcaTTAGCAGAATCG
TTGGAGTGCAACAAACAACTTATTACCGACAAACTAAAATTGCAAGAGGA
ACTCGCAAAACTGAGaaagaaaaatgacaaaactgTAAAAGAAAATGCAG
TTCTATCCATCTACAACAAGATCAAatggaaaatattccaaaaaaatggG
CGAAAAGTCGCTGAAATGGAAGAACGAATCAAAGTATTGGAGAAAAAGCT
CGTGGAGAAGAACCGCTTATTAGGCTGCTTAGAAAACCACAGCGAACCAG
GGAGAGATGCTGAAAGAGTTGTGGATAAAATAAACCAAGAGATTGGTGGA
GAAGTCGATGTGGCTAGCATAAGAAAACGATTAGGTCCTGTAATCAATTA
TGCTCTCTCAGATGACGAGTGCGACGATGTTCCCATAGAAAACGTCATGG
GCCATTGGGTACAAAACGATAACGAGCAGgATTCAAAGAAGATGAAACAA
ATGAGTGTAGACTTATCCGAAGGAAAAGCTCATTTCATTCGATTGAAACG
CAAGTACGAAGTGATCGATAACGCCCTTCGAGAGACCAAATTGAGAAACG
AGCGTCTGGAATTGAAATATCAAGCCGCCTGTCAAGAGCTTGAGGATCGT
ACTgcagaaaagaacaaaaagaaaaccAGAGGTGGTGTCGCCAAGCGGCT
ACGGAACTTATTTGGATGCGCGTCCACACGTAGCGCTGCAGATACCCAAG
AACAGCCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00015520-exon-sc0000212-1491911889:356687..357262 | TCONS_00015520-exon-sc0000212-1491911889:356687..357262 | Clytia hemisphaerica | exon |
| TCONS_00015520-exon-sc0000212-1510915933:356687..357262 | TCONS_00015520-exon-sc0000212-1510915933:356687..357262 | Clytia hemisphaerica | exon |
| TCONS_00015520-exon-sc0000212-1575043694:356687..357262 | TCONS_00015520-exon-sc0000212-1575043694:356687..357262 | Clytia hemisphaerica | exon |
| TCONS_00015520-exon-sc0000212-1491911889:358104..358484 | TCONS_00015520-exon-sc0000212-1491911889:358104..358484 | Clytia hemisphaerica | exon |
| TCONS_00015520-exon-sc0000212-1510915933:358104..358484 | TCONS_00015520-exon-sc0000212-1510915933:358104..358484 | Clytia hemisphaerica | exon |
| TCONS_00015520-exon-sc0000212-1575043694:358104..358484 | TCONS_00015520-exon-sc0000212-1575043694:358104..358484 | Clytia hemisphaerica | exon |
| TCONS_00015520-exon-sc0000212-1491911889:358881..359161 | TCONS_00015520-exon-sc0000212-1491911889:358881..359161 | Clytia hemisphaerica | exon |
| TCONS_00015520-exon-sc0000212-1510915933:358881..359161 | TCONS_00015520-exon-sc0000212-1510915933:358881..359161 | Clytia hemisphaerica | exon |
| TCONS_00015520-exon-sc0000212-1575043694:358881..359161 | TCONS_00015520-exon-sc0000212-1575043694:358881..359161 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000212 | supercontig | sc0000212:356687..359161 + |
Blast
The following BLAST results are available for this feature:
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