TCONS_00015518 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015518
Unique NameTCONS_00015518
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length320

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015518 ID=TCONS_00015518|Name=TCONS_00015518|organism=Clytia hemisphaerica|type=transcript|length=320bp
CTTTTACATCACAGACCACAAAGGATGGTTTATCATTGATCATCAACTTT
TTGTTATCTTCAGTTGATTTTGCATTCAACTCCATACATTCACCTCTTCT
CAGTTCCAATCTCATGTTATTTGCTCCTTGACTAGAAGCTGGTACACGAT
TCTCTCCTCCATCTTTCGATGAATATGATGTCAGACGGCTTTGACCTTTC
GGATCGGCACCTGAGCTAGGTTGCTGTTCAGAATCAGGGTTAGGATAGAA
TCGTGGTGTGAGTATGACTTCTTCGGGTAAGGTGTTGACCAAAGTAAATA
TTTTGGATGCAACATCACCT
Run BLAST on NCBI

transcript from alignment at sc0000212:319695..320123+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015518 ID=TCONS_00015518|Name=TCONS_00015518|organism=Clytia hemisphaerica|type=transcript|length=429bp|location=Sequence derived from alignment at sc0000212:319695..320123+ (Clytia hemisphaerica)
CTTTTACATCACAGACCACAAAGGATGGTTTATCATTGATCATCAACTTT
TTGTTATCTTCAGTTGATTTTGCATTCAACTCCATACATTCACCTCTCTT
TAGTTCCAATCTCATGTTATTTGCTCCTTGACTAGAAGCTGGTACACGAT
TCTCTCCTCCATCTTTCGATGAATATGATGTCAGNCAACTCCATACATTC
ACCTCTTCTCAGTTCCAATCTCATGTTATTTGCTCCTTGACTAGAAGCTG
GTACACGATTCTCTCCTCCATCTTTCGATGAATATGATGTCAGACGGCTT
TGACCTTTCGGATCGGCACCTGAGCTAGGTTGCTGTTCAGAATCAGGGTT
AGGATAGAATCGTGGTGTGAGTATGACTTCTTCGGGTAAGGTGTTGACCA
AAGTAAATATTTTGGATGCAACATCACCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008659XLOC_008659Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015518-exon-sc0000212-1491911889:319695..319781TCONS_00015518-exon-sc0000212-1491911889:319695..319781Clytia hemisphaericaexon
TCONS_00015518-exon-sc0000212-1510915933:319695..319781TCONS_00015518-exon-sc0000212-1510915933:319695..319781Clytia hemisphaericaexon
TCONS_00015518-exon-sc0000212-1575043694:319695..319781TCONS_00015518-exon-sc0000212-1575043694:319695..319781Clytia hemisphaericaexon
TCONS_00015518-exon-sc0000212-1491911889:319891..320123TCONS_00015518-exon-sc0000212-1491911889:319891..320123Clytia hemisphaericaexon
TCONS_00015518-exon-sc0000212-1510915933:319891..320123TCONS_00015518-exon-sc0000212-1510915933:319891..320123Clytia hemisphaericaexon
TCONS_00015518-exon-sc0000212-1575043694:319891..320123TCONS_00015518-exon-sc0000212-1575043694:319891..320123Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000212supercontigsc0000212:319695..320123 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.912219	0	0	0	0	0	1.13756	1.81833	1.26676	0.502631	1.98689	1.4124	1.49452	1.40926	1.67775	0.91176	0	0.305973	0	0.702936	0.887641	0.310695	0.233994	1.26528	1.38379	2.77719	0	0.935725	0.466018	3.98799
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00015518 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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