TCONS_00015501 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015501
Unique NameTCONS_00015501
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1239

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015501 ID=TCONS_00015501|Name=TCONS_00015501|organism=Clytia hemisphaerica|type=transcript|length=1239bp
ATAGCACCTGAGACGTTGATGAGAGCTTTAGAATTATTGAATTACTTGGA
CGCATTGAATGACGATGGTGATTTGACCGAGTTAGGTTCCATGATGGCGG
AATTTCCATTGGATCCACAGTTGGCCAAAATGGTCATTGCAAGTACAGAT
CACAACTGCTCAAATGAAGCTTTGTCCATTGTCGCTATGCTCTCGGTTCA
ACAAGTATTCCAGCGACCGAATGAAGCGAAGAAAGCTGCAGACGAAGCTA
AAATGAAGTTCGCACACATCGATGGTGATCACTTGActcttctaaatgtt
tatcatGCTTTCAAACAAAACCACGAAGAAACTCAATGGTGTTACGATAA
CTTCTTGAACAACCGATCGCTCAAATCAGCTGACAATGTTCGCCAACAAT
TAGCTCGTATTATGGACAGGTTCAATTTGAAACGCACCAGTACTGAGTTC
AACAGTCGTGAATATTACGTCAACATTCGAAAATCATTGGTCACTGGGTT
CTTCATGCAGATTGCACATTTGGAAAGGACTGGACACTACTTAACCGTCA
AAGATAATCAGGTGGTACAATTGCATCCATCCACGTGTTTGGACCATAAA
CCTGAATGGGTTTTATACAATGAGTTCGTCTTGACCACCAAGAACTACAT
CAGAACATGTAGCGATGTCAAACCTGAATGGTTGGTTAAGCTTGCTCCAC
AATATTACGATATGCGCAACTTCCCAAATTGCGAGGCGAAGAAAGTATTG
GAACGTTTGATTAACAAAGCCTATCGTCGACAACAAGAACAGTGAATAAC
TGGGAAAGTTATAAATATCGTGAATTTTTATGAGTATTATCTACAACATG
AACAGTATTTAAGGAGGTGACGATCAAGGTATTGTACGTAGAAAAGAGAC
AGGCCTCTGTGCCAAACAATTTTAAAGGACATGTCTAGGGTTTAGTTGTT
ATAAAACTTGCCCGTAAAACCGGCTTACCGTTTGAAGTATCAGCTAAAGG
TTAAGCCTTGATGCCCAATTTCGAACAGGTATCTTCAAGGATAATTGTGT
TACAATTGTATTGACTTGGTAACAATGGATATTGATTATTTAGATGGATA
ATATTATCAACACAACAGAATACATAACACAAGTTTTTTAATCTTTAAGA
TCGTCAATTTTCTCTTAGGACTTTTCCACTTTTATTAGCCCGCGGGGTCT
ACTGAAGGCCATATAGACTGGATGATGCGCTTAAGCAGG
Run BLAST on NCBI

transcript from alignment at sc0000212:73529..79553+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015501 ID=TCONS_00015501|Name=TCONS_00015501|organism=Clytia hemisphaerica|type=transcript|length=6025bp|location=Sequence derived from alignment at sc0000212:73529..79553+ (Clytia hemisphaerica)
ATAGCACCTGAGACGTTGATGAGAGCTTTAGAATTATTGAATTACTTGGA
CGCATTGAATGACGATGGTGATTTGACCGAGTTAGGTTCCATGATGGCGG
AATTTCCATTGGATCCACAGTTGGCCAAAATGGTCATTGCAAGTACAGAT
CACAACTGCTCAAATGAAGCTTTGTCCATTGTCGCTATGCTCTCGGTTCA
ACAAGTAATAATGATTTTCTTTTGCCTAAAAATATCTCTTTGAGTAGCGT
TTGGGTTTAAAacattgtcaaaaatattttatctccGCCTCAGCAAATTG
CTCTCCATTTCGCAATATATTGGAAGACCCCATTGATTTGTAGATTGTGT
AAATTTGAGAAACAAAGGTGGAGTTGACTAGTCTTAGTTGAAATTTATAT
TGTCTGTTCTAATTATCATCCTACTTTAAATGTCTTGAAATTCAATtcat
aatttcatttttccaatacCAAGAATCCATTAACTTTGAACAGGTATTCC
AGCGACCGAATGAAGCGAAGAAAGCTGCAGACGAAGCTAAAATGAAGTTC
GCACACATCGATGGTGATCACTTGActcttctaaatgtttatcatGCTTT
CAAACAAAGTAAGTGATGACAACGTACTTTAGAAGCTATATTCAGTGCAT
CGAGCATTGTTTGTAGTTAATTCAGGTTAATTGTTCAATGGTAtagaaat
gggcttttccagaaaaaaatcgtgcaccccctgttgaggaggtccaatgg
ggtaaggtttgaaatgcagtggaattccataggggtagacgaaaatccgt
caaaaataagcggaattccaagggggtaatgattagaaatttgtaaaaat
tcggaattccagaggggtatgatcctaaaattggcTGGAATTCCAAgagg
gtaggtcacaaaaggttggacctcctcaacaggggatgcacggttttttt
ctggaaaagcccaatgttaAATTTGTAATTCCAAACGGTTGGTGAAAATA
ACCTATTATTATAATCCTGGTACTCAAAGGTAGGCAATTTTTAAAACTCG
TGTTTCAATATCTATAATCCTTCTAACATGTAAATGTAACAAGTAGCACT
CCTCTCGAGTAAAATGCATCACTGGCCCGGAGTAATCTACACCTCAATAT
TCGCGCAAATTTattattcttccaggaagtaaaATTTTATTTCCTGTAAG
TTTATTTTACTCATAAGAAGATTGTAGGCTTGGTATACATTAAAGATTTG
ATAAGTGTTTTACCACTTTGGAGCGCTATGCATGTTTATTTCAGTGCTAT
ACTCATAAACAaagctttttttctttgtcactTTCGAGATTATTCAAAAT
GTTGCGTCTCATGAAACAAACGATCATAATATATTTCAGACCACGAAGAA
ACTCAATGGTGTTACGATAACTTCTTGAACAACCGATCGCTCAAATCAGC
TGACAATGTTCGCCAACAATTAGCTCGTATTATGGACAGGTTCAATTTGA
AACGCACCAGTACTGAGTTCAACAGTCGTGAATATTACGTCAACATTCGA
AAATCATTGGTCACTGGGTTCTTCATGCAGGTGcgcttttcttttccttt
ttcattttcttggtaGAACCTCAAGACGTTCAATcaaattgggctattcc
agaaatagtctgtaccccatGTTGAGGAGATGTGACGTCCACAGTGGGTT
CGACtgacaattcctgcattaataacacgcatgcgtaatttgtcgttctt
ttagaccacaagtagttatttcccgtggggtggtacagtcactctcggtc
ggggttgtggacggctaaatgtgaaatttgtcgttcttttttgtcgtttt
ttatgaaatttgtcgttcttttgtctatttttagtaatgcaggaattGTA
AGATAGAGGCTCTCCCAGGGTGgtctagaaaataaaaaatccagggtggt
cagtaaaatcgggttgaaaatccagggtggtccaaagaaatgggaaaaat
tgccctgaaaaattgggaaaaaatccAGAGGGtcacatttaaaaaaagaa
gatcTCAACTTAACGGGGTACAATTtctttctggaatagcccatttctTT
CTACCAGTTTTAACTCCTTAGCCGAATGCTGATTATATCGCTGATCGTAT
CCCTGATTGTATCCCTCTCCTTAATTATAGCAGTAGCTAGAAacgttttc
tatattttttacgCCTTATTCAGCCGTTTGGCAGGCCAACTTAATTGAAC
TTTTGTCATTGAGAATCCTTTGTCTCAGTGCCGTGGTGTCGTGATACATG
TTTTGGTATAGGGGGAGGGAAGGACAACCTATTCAAAAGATACATACCAA
TCTTTTTTCAGTCTTTCTTTGTCTTAATCCATTCTGTAATGTCAAATTCC
CAATGAAGaattttatttcacttttgactttttattttcgGGTGGGGTCA
AAAAACTTGTCTCGTCTTAAGTAAGTAAGATTGCGACCGCAGTcaagggc
gacccgaaggctcccttttcgtatagctgtctacccgaaggtaggggagg
gcgccactcctttccctggatttctccacttacccttgatccgtctcttt
agttgctgggcatcaagcagagaggcaccaagtaccattttgggaatctt
tggtatgacccggctggggatcgaacccacaattttgcgcaccgtagctg
gatgctctaccctCATGCTACGGTCGCTAACGTCTCGGCTTACTAGTATA
GTATAGACCTGTAAAAATCTCATATGATGCCAGTACCACTTTGGGGTTTT
ATTAAGAGTTCTCTCTAccttcaaaataaaagaaattatgaaaaataatc
TATCCgcttttttatatcttttgaaTAGATAACGGTCCTTCCCTGACATT
TGATGAAAAAGGGAATAGCTAGAATGTATCACACACCACCTTTGTGTGAA
GGGGTCCCATCGGTCTTTCCTTCGATAGGTTCTAAGGAGGAGAAGGAGCC
GGTGGTAGGAGATTCTATATGAACATTAACTAAACGTAAAAACTCCCTAT
TCCATCTTGTGTGTGATTGGTTGGTTGGTACAGATTGCACATTTGGAAAG
GACTGGACACTACTTAACCGTCAAAGATAATCAGGTAAGTAGNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNGTAAAAATCTCATATGATGCCAGTACCACTTTGGGGTTTTATTAAG
AGTTCTCTCTAccttcaaaataaaagaaattatgaaaaataatcTATCCg
cttttttatatcttttgaaTAGATAACGGTCCTTCCCTGACATTTGATGA
AAAAGGGAATAGCTAGAATGTATCACACACCACCTTTGTGTGAAGGGGTC
CCATCGGTCTTTCCTTCGATAGGTTCTAAGGAGGAGAAGGAGCCGGTGGT
AGGAGATTCTATATGAACATTAACTAAACGTAAAAACTCCCTATTCCATC
TTGTGTGTGATTGGTTGGTTGGTACAGATTGCACATTTGGAAAGGACTGG
ACACTACTTAACCGTCAAAGATAACCAGGTAAGTAGTTATAGAAACAAAT
TTCTCTTTTTGGGTgtcctttttgtttttattgaaattactTCGATTCTC
TCTGAAGCAAGTTTACTTTAAAAGATATTTACAATGTGAGGCTGCCACTT
CTTTCTAATAAAAATCGTTCACGGAAATTACtgaaaattcttcttttctg
cGTTTCATACTGTCATCTGTCTTTTTCACCAACTTCAAGGTCATATATAA
TCTTATTTCTTTTTAACACTCATTTTAACAATTTCTTGTTTCTCTCCATA
ATTTCACCGAATAATAACAGGTGGTACAATTGCATCCATCCACGTGTTTG
GACCATAAACCTGAATGGGTTTTATACAATGAGTTCGTCTTGACCACCAA
GAACTACATCAGAACATGTAGCGATGTCAAACCTGAATGGTAAGAACATA
TATTTTTGCCAGAAGTTGGTACCAGTGTTTGACGATATTACGAAAATCAT
TATAACCCaacaaaatatcttttcaaaaaaataaaagttaaactctTCTT
TGTTATACagaaaacatctatctcataaattGAATATTATTCTGGCCTTC
TCTGGTAGTCTAGCCTGCCAAGGCAAAAAATAACGAAAGGGTCAGATTAA
GTTCACACAAACTGATATGCTCCCGTTACGACTGTTGTATGTTGTATTAG
TATATAACAGCAATATTACTGTATACATGGATTATAAACGATATTATTCT
AGCCTTCTGGTTGTGCAAAGGCTCCTTTTAATACTCCTCgtagtgtcctt
cagggtctcttccccccatgcctagaatgaaaattttccatccccccTCA
TTTTTCCCCACCCTGCCTCCAAAAATTTNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNtatacgtccttttgacctcaaaacccatcccccctgaatccagg
ggggggaggacactatgctcCTGTTTCCCTCACGATATAACAAGTCTCAA
TTTCTATTTGGTTTAGGTTGGTTAAGCTTGCTCCACAATATTACGATATG
CGCAACTTCCCAAATTGCGAGGCGAAGAAAGTATTGGAACGTTTGATTAA
CAAAGCCTATCGTCGACAACAAGAACAGTGAATAACTGGGAAAGTTATAA
ATATCGTGAATTTTTATGAGTATTATCTACAACATGAACAGTATTTAAGG
AGGTGACGATCAAGGTATTGTACGTAGAAAAGAGACAGGCCTCTGTGCCA
AACAATTTTAAAGGACATGTCTAGGGTTTAGTTGTTATAAAACTTGCCCG
TAAAACCGGCTTACCGTTTGAAGTATCAGCTAAAGGTTAAGCCTTGATGC
CCAATTTCGAACAGGTATCTTCAAGGATAATTGTGTTACAATTGTATTGA
CTTGGTAACAATGGATATTGATTATTTAGATGGATAATATTATCAACACA
ACAGAATACATAACACAAGTTTTTTAATCTTTAAGATCGTCAATTTTCTC
TTAGGACTTTTCCACTTTTATTAGCCCGCGGGGTCTACTGAAGGCCATAT
AGACTGGATGATGCGCTTAAGCAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008652XLOC_008652Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015501-exon-sc0000212-1491911889:73529..73732TCONS_00015501-exon-sc0000212-1491911889:73529..73732Clytia hemisphaericaexon
TCONS_00015501-exon-sc0000212-1510915933:73529..73732TCONS_00015501-exon-sc0000212-1510915933:73529..73732Clytia hemisphaericaexon
TCONS_00015501-exon-sc0000212-1575043694:73529..73732TCONS_00015501-exon-sc0000212-1575043694:73529..73732Clytia hemisphaericaexon
TCONS_00015501-exon-sc0000212-1491911889:74022..74136TCONS_00015501-exon-sc0000212-1491911889:74022..74136Clytia hemisphaericaexon
TCONS_00015501-exon-sc0000212-1510915933:74022..74136TCONS_00015501-exon-sc0000212-1510915933:74022..74136Clytia hemisphaericaexon
TCONS_00015501-exon-sc0000212-1575043694:74022..74136TCONS_00015501-exon-sc0000212-1575043694:74022..74136Clytia hemisphaericaexon
TCONS_00015501-exon-sc0000212-1491911889:74918..75108TCONS_00015501-exon-sc0000212-1491911889:74918..75108Clytia hemisphaericaexon
TCONS_00015501-exon-sc0000212-1510915933:74918..75108TCONS_00015501-exon-sc0000212-1510915933:74918..75108Clytia hemisphaericaexon
TCONS_00015501-exon-sc0000212-1575043694:74918..75108TCONS_00015501-exon-sc0000212-1575043694:74918..75108Clytia hemisphaericaexon
TCONS_00015501-exon-sc0000212-1491911889:76612..76662TCONS_00015501-exon-sc0000212-1491911889:76612..76662Clytia hemisphaericaexon
TCONS_00015501-exon-sc0000212-1510915933:76612..76662TCONS_00015501-exon-sc0000212-1510915933:76612..76662Clytia hemisphaericaexon
TCONS_00015501-exon-sc0000212-1575043694:76612..76662TCONS_00015501-exon-sc0000212-1575043694:76612..76662Clytia hemisphaericaexon
TCONS_00015501-exon-sc0000212-1491911889:77449..77567TCONS_00015501-exon-sc0000212-1491911889:77449..77567Clytia hemisphaericaexon
TCONS_00015501-exon-sc0000212-1510915933:77449..77567TCONS_00015501-exon-sc0000212-1510915933:77449..77567Clytia hemisphaericaexon
TCONS_00015501-exon-sc0000212-1575043694:77449..77567TCONS_00015501-exon-sc0000212-1575043694:77449..77567Clytia hemisphaericaexon
TCONS_00015501-exon-sc0000212-1491911889:78995..79553TCONS_00015501-exon-sc0000212-1491911889:78995..79553Clytia hemisphaericaexon
TCONS_00015501-exon-sc0000212-1510915933:78995..79553TCONS_00015501-exon-sc0000212-1510915933:78995..79553Clytia hemisphaericaexon
TCONS_00015501-exon-sc0000212-1575043694:78995..79553TCONS_00015501-exon-sc0000212-1575043694:78995..79553Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000212supercontigsc0000212:73529..79553 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.685083	0	0	0.537322	13.5082	5.6676	12.2521	15.909	6.25888	3.82196	17.2598	19.3381	20.66	13.9504	0	0	0	0	0	0	0	0	0	0	18.5646	16.5579	0	0	0	0.529127
Blast
[Close]
BLAST of TCONS_00015501 vs. Swiss-Prot (Human)
Match: DHX15 (Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 OS=Homo sapiens GN=DHX15 PE=1 SV=2)

HSP 1 Score: 447.973 bits (1151), Expect = 1.203e-149
Identity = 220/263 (83.65%), Postives = 238/263 (90.49%), Query Frame = 1 
Query:    4 APETLMRALELLNYLDALNDDGDLTELGSMMAEFPLDPQLAKMVIASTDHNCSNEALSIVAMLSVQQVFQRPNEXXXXXXXXXXXXXHIDGDHLTLLNVYHAFKQNHEETQWCYDNFLNNRSLKSADNVRQQLARIMDRFNLKRTSTEFNSREYYVNIRKSLVTGFFMQIAHLERTGHYLTVKDNQVVQLHPSTCLDHKPEWVLYNEFVLTTKNYIRTCSDVKPEWLVKLAPQYYDMRNFPNCEAKKVLERLINKAYRRQQEQ 792
            APETLMRALELLNYL ALNDDGDLTELGSMMAEFPLDPQLAKMVIAS D+NCSNE LSI AMLSV Q F RP EAKKAADEAKM+FAHIDGDHLTLLNVYHAFKQNHE  QWCYDNF+N RSL SADNVRQQL+RIMDRFNL R ST+F SR+YY+NIRK+LVTG+FMQ+AHLERTGHYLTVKDNQVVQLHPST LDHKPEWVLYNEFVLTTKNYIRTC+D+KPEWLVK+APQYYDM NFP CEAK+ L+R+I K   ++  Q
Sbjct:  532 APETLMRALELLNYLAALNDDGDLTELGSMMAEFPLDPQLAKMVIASCDYNCSNEVLSITAMLSVPQCFVRPTEAKKAADEAKMRFAHIDGDHLTLLNVYHAFKQNHESVQWCYDNFINYRSLMSADNVRQQLSRIMDRFNLPRRSTDFTSRDYYINIRKALVTGYFMQVAHLERTGHYLTVKDNQVVQLHPSTVLDHKPEWVLYNEFVLTTKNYIRTCTDIKPEWLVKIAPQYYDMSNFPQCEAKRQLDRIIAKLQSKEYSQ 794
The following BLAST results are available for this feature:
BLAST of TCONS_00015501 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DHX151.203e-14983.65Pre-mRNA-splicing factor ATP-dependent RNA helicas... [more]
back to top