TCONS_00015499 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015499
Unique NameTCONS_00015499
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1240

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015499 ID=TCONS_00015499|Name=TCONS_00015499|organism=Clytia hemisphaerica|type=transcript|length=1240bp
TATAGCACCTGAGACATTGATGAGAGCTTTAGAATTATTGAATTACTTGG
ACGCATTGAATGACGATGGTGATTTGACCGAGTTAGGTTCCATGATGGCG
GAATTTCCATTGGATCCACAGTTGGCCAAAATGGTCATTGCAAGTACAGA
TCACAACTGCTCAAATGAAGCTTTGTCCATTGTCGCTATGCTCTCGGTTC
AACAAGTATTCCAGCGACCGAATGAAGCGAAGAAAGCTGCAGACGAAGCT
AAAATGAAGTTCGCACACATCGATGGTGATCACTTGActcttctaaatgt
ttatcatGCTTTCAAACAAAACCACGAAGAAACTCAATGGTGTTACGATA
ACTTCTTGAACAACCGATCGCTCAAATCAGCTGACAATGTTCGCCAACAA
TTAGCTCGTATTATGGACAGGTTCAATTTGAAACGCACCAGTACTGAGTT
CAACAGTCGTGAATATTACGTCAACATTCGAAAATCATTGGTCACTGGGT
TCTTCATGCAGATTGCACATTTGGAAAGGACTGGACACTACTTAACCGTC
AAAGATAATCAGGTGGTACAATTGCATCCATCCACGTGTTTGGACCATAA
ACCTGAATGGGTTTTATACAATGAGTTCGTCTTGACCACCAAGAACTACA
TCAGAACATGTAGCGATGTCAAACCTGAATGGTTGGTTAAGCTTGCTCCA
CAATATTACGATATGCGCAACTTCCCAAATTGCGAGGCGAAGAAAGTATT
GGAACGTTTGATTAACAAAGCCTATCGTCGACAACAAGAACAGTGAATAA
CTGGGAAAGTTATAAATATCGTGAATTTTTATGAGTATTATCTACAACAT
GAACAGTATTTAAGGAGGTGACGATCAAGGTATTGTACGTAGAAAAGAGA
CAGGCCTCTGTGCCAAACAATTTTAAAGGACATGTCTAGGGTTTAGTTGT
TATAAAACTTGCCCGTAAAACCGGCTTACCGTTTGAAGTATCAGCTAAAG
GTTAAGCCTTGATGCCCAATTTCGAACAGGTATCTTCAAGGATAATTGTG
TTACAATTGTATTGACTTGGTAACAATGGATATTGATTATTTAGATGGAT
AATATTATCAACACAACAGAATACATAACACAAGTTTTTTAATCTTTAAG
ATCGTCAATTTTCTCTTAGGACTTTTCCACTTTTATTAGCCCGCGGGGTC
TACTGAAGGCCATATAGACTGGATGATGCGCTTAAGCAGG
Run BLAST on NCBI

protein sequence of TCONS_00015499-protein

>TCONS_00015499-protein ID=TCONS_00015499-protein|Name=TCONS_00015499-protein|organism=Clytia hemisphaerica|type=polypeptide|length=264bp
IAPETLMRALELLNYLDALNDDGDLTELGSMMAEFPLDPQLAKMVIASTD
HNCSNEALSIVAMLSVQQVFQRPNEAKKAADEAKMKFAHIDGDHLTLLNV
YHAFKQNHEETQWCYDNFLNNRSLKSADNVRQQLARIMDRFNLKRTSTEF
NSREYYVNIRKSLVTGFFMQIAHLERTGHYLTVKDNQVVQLHPSTCLDHK
PEWVLYNEFVLTTKNYIRTCSDVKPEWLVKLAPQYYDMRNFPNCEAKKVL
ERLINKAYRRQQEQ
Run BLAST on NCBI

transcript from alignment at sc0000212:72777..79553+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015499 ID=TCONS_00015499|Name=TCONS_00015499|organism=Clytia hemisphaerica|type=transcript|length=6777bp|location=Sequence derived from alignment at sc0000212:72777..79553+ (Clytia hemisphaerica)
TATAGCACCTGAGACATTGATGAGAGCTTTAGAATTATTGAATTACTTGG
ACGCATTGAATGACGATGGTGATTTGACCGAGTTAGGTTCCATGATGGCG
GAATTTCCATTGGATCCACAGTTGGCCAAAATGGTCATTGCAAGTACAGA
TCACAACTGCTCAAATGAAGCTTTGTCCATTGTCGCTATGCTCTCGGTTC
AACAAGTAATAATGATTTTCTTTTGCCTAAAAATATCTCTTTGAGTAGCG
TTTGGGTTTAAAacattgtcaaaaatattttatctccGCCTCAGCAAATT
GCTCTCCATTTCGCAATATATTGGAAGACCCCATTGATTTGTAGATTGTG
TAAATTTGAGAAACAAAGGTGGAGTTGACTAGTCTTAGTTGAAATTTATA
TTGTCTGTTCTAATTATCATCCTACTTTAAATGTCTTGAAATTCAATtca
taatttcatttttccaatacCAAAAATCCATTAACTTTGAACAGGTATTC
CAGCGACCGAATGAAGCGAAGAAAGCTGCAGACGAAGCTAAAATGAAGTT
CGCACACATCGATGGTGATCACTTGACTCTTCNTTACCCAAGCCGCACAT
TTCTGCGGATAGTCGTAATTAAAAATTAACATGTTCAATTCACGGTCTGG
AAAGCAAAGACTTTATCTACTTCCCAGAACTGCTGAAGTCAATATCGTTG
CTTTCTTCTATCACTATCTTTTtcaatttacaagtttttttgctACTACT
TTATAGCACCTGAGACGTTGATGAGAGCTTTAGAATTATTGAATTACTTG
GACGCATTGAATGACGATGGTGATTTGACCGAGTTAGGTTCCATGATGGC
GGAATTTCCATTGGATCCACAGTTGGCCAAAATGGTCATTGCAAGTACAG
ATCACAACTGCTCAAATGAAGCTTTGTCCATTGTCGCTATGCTCTCGGTT
CAACAAGTAATAATGATTTTCTTTTGCCTAAAAATATCTCTTTGAGTAGC
GTTTGGGTTTAAAacattgtcaaaaatattttatctccGCCTCAGCAAAT
TGCTCTCCATTTCGCAATATATTGGAAGACCCCATTGATTTGTAGATTGT
GTAAATTTGAGAAACAAAGGTGGAGTTGACTAGTCTTAGTTGAAATTTAT
ATTGTCTGTTCTAATTATCATCCTACTTTAAATGTCTTGAAATTCAATtc
ataatttcatttttccaatacCAAGAATCCATTAACTTTGAACAGGTATT
CCAGCGACCGAATGAAGCGAAGAAAGCTGCAGACGAAGCTAAAATGAAGT
TCGCACACATCGATGGTGATCACTTGActcttctaaatgtttatcatGCT
TTCAAACAAAGTAAGTGATGACAACGTACTTTAGAAGCTATATTCAGTGC
ATCGAGCATTGTTTGTAGTTAATTCAGGTTAATTGTTCAATGGTAtagaa
atgggcttttccagaaaaaaatcgtgcaccccctgttgaggaggtccaat
ggggtaaggtttgaaatgcagtggaattccataggggtagacgaaaatcc
gtcaaaaataagcggaattccaagggggtaatgattagaaatttgtaaaa
attcggaattccagaggggtatgatcctaaaattggcTGGAATTCCAAga
gggtaggtcacaaaaggttggacctcctcaacaggggatgcacggttttt
ttctggaaaagcccaatgttaAATTTGTAATTCCAAACGGTTGGTGAAAA
TAACCTATTATTATAATCCTGGTACTCAAAGGTAGGCAATTTTTAAAACT
CGTGTTTCAATATCTATAATCCTTCTAACATGTAAATGTAACAAGTAGCA
CTCCTCTCGAGTAAAATGCATCACTGGCCCGGAGTAATCTACACCTCAAT
ATTCGCGCAAATTTattattcttccaggaagtaaaATTTTATTTCCTGTA
AGTTTATTTTACTCATAAGAAGATTGTAGGCTTGGTATACATTAAAGATT
TGATAAGTGTTTTACCACTTTGGAGCGCTATGCATGTTTATTTCAGTGCT
ATACTCATAAACAaagctttttttctttgtcactTTCGAGATTATTCAAA
ATGTTGCGTCTCATGAAACAAACGATCATAATATATTTCAGACCACGAAG
AAACTCAATGGTGTTACGATAACTTCTTGAACAACCGATCGCTCAAATCA
GCTGACAATGTTCGCCAACAATTAGCTCGTATTATGGACAGGTTCAATTT
GAAACGCACCAGTACTGAGTTCAACAGTCGTGAATATTACGTCAACATTC
GAAAATCATTGGTCACTGGGTTCTTCATGCAGGTGcgcttttcttttcct
ttttcattttcttggtaGAACCTCAAGACGTTCAATcaaattgggctatt
ccagaaatagtctgtaccccatGTTGAGGAGATGTGACGTCCACAGTGGG
TTCGACtgacaattcctgcattaataacacgcatgcgtaatttgtcgttc
ttttagaccacaagtagttatttcccgtggggtggtacagtcactctcgg
tcggggttgtggacggctaaatgtgaaatttgtcgttcttttttgtcgtt
ttttatgaaatttgtcgttcttttgtctatttttagtaatgcaggaattG
TAAGATAGAGGCTCTCCCAGGGTGgtctagaaaataaaaaatccagggtg
gtcagtaaaatcgggttgaaaatccagggtggtccaaagaaatgggaaaa
attgccctgaaaaattgggaaaaaatccAGAGGGtcacatttaaaaaaag
aagatcTCAACTTAACGGGGTACAATTtctttctggaatagcccatttct
TTCTACCAGTTTTAACTCCTTAGCCGAATGCTGATTATATCGCTGATCGT
ATCCCTGATTGTATCCCTCTCCTTAATTATAGCAGTAGCTAGAAacgttt
tctatattttttacgCCTTATTCAGCCGTTTGGCAGGCCAACTTAATTGA
ACTTTTGTCATTGAGAATCCTTTGTCTCAGTGCCGTGGTGTCGTGATACA
TGTTTTGGTATAGGGGGAGGGAAGGACAACCTATTCAAAAGATACATACC
AATCTTTTTTCAGTCTTTCTTTGTCTTAATCCATTCTGTAATGTCAAATT
CCCAATGAAGaattttatttcacttttgactttttattttcgGGTGGGGT
CAAAAAACTTGTCTCGTCTTAAGTAAGTAAGATTGCGACCGCAGTcaagg
gcgacccgaaggctcccttttcgtatagctgtctacccgaaggtagggga
gggcgccactcctttccctggatttctccacttacccttgatccgtctct
ttagttgctgggcatcaagcagagaggcaccaagtaccattttgggaatc
tttggtatgacccggctggggatcgaacccacaattttgcgcaccgtagc
tggatgctctaccctCATGCTACGGTCGCTAACGTCTCGGCTTACTAGTA
TAGTATAGACCTGTAAAAATCTCATATGATGCCAGTACCACTTTGGGGTT
TTATTAAGAGTTCTCTCTAccttcaaaataaaagaaattatgaaaaataa
tcTATCCgcttttttatatcttttgaaTAGATAACGGTCCTTCCCTGACA
TTTGATGAAAAAGGGAATAGCTAGAATGTATCACACACCACCTTTGTGTG
AAGGGGTCCCATCGGTCTTTCCTTCGATAGGTTCTAAGGAGGAGAAGGAG
CCGGTGGTAGGAGATTCTATATGAACATTAACTAAACGTAAAAACTCCCT
ATTCCATCTTGTGTGTGATTGGTTGGTTGGTACAGATTGCACATTTGGAA
AGGACTGGACACTACTTAACCGTCAAAGATAATCAGGTAAGTAGNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNGTAAAAATCTCATATGATGCCAGTACCACTTTGGGGTTTTATTA
AGAGTTCTCTCTAccttcaaaataaaagaaattatgaaaaataatcTATC
CgcttttttatatcttttgaaTAGATAACGGTCCTTCCCTGACATTTGAT
GAAAAAGGGAATAGCTAGAATGTATCACACACCACCTTTGTGTGAAGGGG
TCCCATCGGTCTTTCCTTCGATAGGTTCTAAGGAGGAGAAGGAGCCGGTG
GTAGGAGATTCTATATGAACATTAACTAAACGTAAAAACTCCCTATTCCA
TCTTGTGTGTGATTGGTTGGTTGGTACAGATTGCACATTTGGAAAGGACT
GGACACTACTTAACCGTCAAAGATAACCAGGTAAGTAGTTATAGAAACAA
ATTTCTCTTTTTGGGTgtcctttttgtttttattgaaattactTCGATTC
TCTCTGAAGCAAGTTTACTTTAAAAGATATTTACAATGTGAGGCTGCCAC
TTCTTTCTAATAAAAATCGTTCACGGAAATTACtgaaaattcttcttttc
tgcGTTTCATACTGTCATCTGTCTTTTTCACCAACTTCAAGGTCATATAT
AATCTTATTTCTTTTTAACACTCATTTTAACAATTTCTTGTTTCTCTCCA
TAATTTCACCGAATAATAACAGGTGGTACAATTGCATCCATCCACGTGTT
TGGACCATAAACCTGAATGGGTTTTATACAATGAGTTCGTCTTGACCACC
AAGAACTACATCAGAACATGTAGCGATGTCAAACCTGAATGGTAAGAACA
TATATTTTTGCCAGAAGTTGGTACCAGTGTTTGACGATATTACGAAAATC
ATTATAACCCaacaaaatatcttttcaaaaaaataaaagttaaactctTC
TTTGTTATACagaaaacatctatctcataaattGAATATTATTCTGGCCT
TCTCTGGTAGTCTAGCCTGCCAAGGCAAAAAATAACGAAAGGGTCAGATT
AAGTTCACACAAACTGATATGCTCCCGTTACGACTGTTGTATGTTGTATT
AGTATATAACAGCAATATTACTGTATACATGGATTATAAACGATATTATT
CTAGCCTTCTGGTTGTGCAAAGGCTCCTTTTAATACTCCTCgtagtgtcc
ttcagggtctcttccccccatgcctagaatgaaaattttccatccccccT
CATTTTTCCCCACCCTGCCTCCAAAAATTTNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNtatacgtccttttgacctcaaaacccatcccccctgaatcca
ggggggggaggacactatgctcCTGTTTCCCTCACGATATAACAAGTCTC
AATTTCTATTTGGTTTAGGTTGGTTAAGCTTGCTCCACAATATTACGATA
TGCGCAACTTCCCAAATTGCGAGGCGAAGAAAGTATTGGAACGTTTGATT
AACAAAGCCTATCGTCGACAACAAGAACAGTGAATAACTGGGAAAGTTAT
AAATATCGTGAATTTTTATGAGTATTATCTACAACATGAACAGTATTTAA
GGAGGTGACGATCAAGGTATTGTACGTAGAAAAGAGACAGGCCTCTGTGC
CAAACAATTTTAAAGGACATGTCTAGGGTTTAGTTGTTATAAAACTTGCC
CGTAAAACCGGCTTACCGTTTGAAGTATCAGCTAAAGGTTAAGCCTTGAT
GCCCAATTTCGAACAGGTATCTTCAAGGATAATTGTGTTACAATTGTATT
GACTTGGTAACAATGGATATTGATTATTTAGATGGATAATATTATCAACA
CAACAGAATACATAACACAAGTTTTTTAATCTTTAAGATCGTCAATTTTC
TCTTAGGACTTTTCCACTTTTATTAGCCCGCGGGGTCTACTGAAGGCCAT
ATAGACTGGATGATGCGCTTAAGCAGG

Coding sequence (CDS) from alignment at sc0000212:72777..79553+

>TCONS_00015499 ID=TCONS_00015499|Name=TCONS_00015499|organism=Clytia hemisphaerica|type=CDS|length=5565bp|location=Sequence derived from alignment at sc0000212:72777..79553+ (Clytia hemisphaerica)
ATAGCACCTGAGACATTGATGAGAGCTTTAGAATTATTGAATTACTTGGA
CGCATTGAATGACGATGGTGATTTGACCGAGTTAGGTTCCATGATGGCGG
AATTTCCATTGGATCCACAGTTGGCCAAAATGGTCATTGCAAGTACAGAT
CACAACTGCTCAAATGAAGCTTTGTCCATTGTCGCTATGCTCTCGGTTCA
ACAAGTATTCCAGCGACCGAATGAAGCGAAGAAAGCTGCAGACGAAGCTA
AAATGAAGTTCGCACACATCGATGGTGATCACTTGActcttctaaatgtt
tatcatGCTTTCAAACAAAACCACGAAGAAACTCAATGGTGTTACGATAA
CTTCTTGAACAACCGATCGCTCAAATCAGCTGACAATGTTCGCCAACAAT
TAGCTCGTATTATGGACAGGTTCAATTTGAAACGCACCAGTACTGAGTTC
AACAGTCGTGAATATTACGTCAACATTCGAAAATCATTGGTCACTGGGTT
CTTCATGCAGATTGCACATTTGGAAAGGACTGGACACTACTTAACCGTCA
AAGATAATCAGGTGGTACAATTGCATCCATCCACGTGTTTGGACCATAAA
CCTGAATGGGTTTTATACAATGAGTTCGTCTTGACCACCAAGAACTACAT
CAGAACATGTAGCGATGTCAAACCTGAATGGTTGGTTAAGCTTGCTCCAC
AATATTACGATATGCGCAACTTCCCAAATTGCGAGGCGAAGAAAGTATTG
GAACGTTTGATTAACAAAGCCTATCGTCGACAACAAGAACAGTGAATAGC
ACCTGAGACATTGATGAGAGCTTTAGAATTATTGAATTACTTGGACGCAT
TGAATGACGATGGTGATTTGACCGAGTTAGGTTCCATGATGGCGGAATTT
CCATTGGATCCACAGTTGGCCAAAATGGTCATTGCAAGTACAGATCACAA
CTGCTCAAATGAAGCTTTGTCCATTGTCGCTATGCTCTCGGTTCAACAAG
TATTCCAGCGACCGAATGAAGCGAAGAAAGCTGCAGACGAAGCTAAAATG
AAGTTCGCACACATCGATGGTGATCACTTGActcttctaaatgtttatca
tGCTTTCAAACAAAACCACGAAGAAACTCAATGGTGTTACGATAACTTCT
TGAACAACCGATCGCTCAAATCAGCTGACAATGTTCGCCAACAATTAGCT
CGTATTATGGACAGGTTCAATTTGAAACGCACCAGTACTGAGTTCAACAG
TCGTGAATATTACGTCAACATTCGAAAATCATTGGTCACTGGGTTCTTCA
TGCAGATTGCACATTTGGAAAGGACTGGACACTACTTAACCGTCAAAGAT
AATCAGGTGGTACAATTGCATCCATCCACGTGTTTGGACCATAAACCTGA
ATGGGTTTTATACAATGAGTTCGTCTTGACCACCAAGAACTACATCAGAA
CATGTAGCGATGTCAAACCTGAATGGTTGGTTAAGCTTGCTCCACAATAT
TACGATATGCGCAACTTCCCAAATTGCGAGGCGAAGAAAGTATTGGAACG
TTTGATTAACAAAGCCTATCGTCGACAACAAGAACAGTGAATAGCACCTG
AGACATTGATGAGAGCTTTAGAATTATTGAATTACTTGGACGCATTGAAT
GACGATGGTGATTTGACCGAGTTAGGTTCCATGATGGCGGAATTTCCATT
GGATCCACAGTTGGCCAAAATGGTCATTGCAAGTACAGATCACAACTGCT
CAAATGAAGCTTTGTCCATTGTCGCTATGCTCTCGGTTCAACAAGTATTC
CAGCGACCGAATGAAGCGAAGAAAGCTGCAGACGAAGCTAAAATGAAGTT
CGCACACATCGATGGTGATCACTTGActcttctaaatgtttatcatGCTT
TCAAACAAAACCACGAAGAAACTCAATGGTGTTACGATAACTTCTTGAAC
AACCGATCGCTCAAATCAGCTGACAATGTTCGCCAACAATTAGCTCGTAT
TATGGACAGGTTCAATTTGAAACGCACCAGTACTGAGTTCAACAGTCGTG
AATATTACGTCAACATTCGAAAATCATTGGTCACTGGGTTCTTCATGCAG
ATTGCACATTTGGAAAGGACTGGACACTACTTAACCGTCAAAGATAATCA
GGTGGTACAATTGCATCCATCCACGTGTTTGGACCATAAACCTGAATGGG
TTTTATACAATGAGTTCGTCTTGACCACCAAGAACTACATCAGAACATGT
AGCGATGTCAAACCTGAATGGTTGGTTAAGCTTGCTCCACAATATTACGA
TATGCGCAACTTCCCAAATTGCGAGGCGAAGAAAGTATTGGAACGTTTGA
TTAACAAAGCCTATCGTCGACAACAAGAACAGTGAATAGCACCTGAGACA
TTGATGAGAGCTTTAGAATTATTGAATTACTTGGACGCATTGAATGACGA
TGGTGATTTGACCGAGTTAGGTTCCATGATGGCGGAATTTCCATTGGATC
CACAGTTGGCCAAAATGGTCATTGCAAGTACAGATCACAACTGCTCAAAT
GAAGCTTTGTCCATTGTCGCTATGCTCTCGGTTCAACAAGTATTCCAGCG
ACCGAATGAAGCGAAGAAAGCTGCAGACGAAGCTAAAATGAAGTTCGCAC
ACATCGATGGTGATCACTTGActcttctaaatgtttatcatGCTTTCAAA
CAAAACCACGAAGAAACTCAATGGTGTTACGATAACTTCTTGAACAACCG
ATCGCTCAAATCAGCTGACAATGTTCGCCAACAATTAGCTCGTATTATGG
ACAGGTTCAATTTGAAACGCACCAGTACTGAGTTCAACAGTCGTGAATAT
TACGTCAACATTCGAAAATCATTGGTCACTGGGTTCTTCATGCAGATTGC
ACATTTGGAAAGGACTGGACACTACTTAACCGTCAAAGATAATCAGGTGG
TACAATTGCATCCATCCACGTGTTTGGACCATAAACCTGAATGGGTTTTA
TACAATGAGTTCGTCTTGACCACCAAGAACTACATCAGAACATGTAGCGA
TGTCAAACCTGAATGGTTGGTTAAGCTTGCTCCACAATATTACGATATGC
GCAACTTCCCAAATTGCGAGGCGAAGAAAGTATTGGAACGTTTGATTAAC
AAAGCCTATCGTCGACAACAAGAACAGTGAATAGCACCTGAGACATTGAT
GAGAGCTTTAGAATTATTGAATTACTTGGACGCATTGAATGACGATGGTG
ATTTGACCGAGTTAGGTTCCATGATGGCGGAATTTCCATTGGATCCACAG
TTGGCCAAAATGGTCATTGCAAGTACAGATCACAACTGCTCAAATGAAGC
TTTGTCCATTGTCGCTATGCTCTCGGTTCAACAAGTATTCCAGCGACCGA
ATGAAGCGAAGAAAGCTGCAGACGAAGCTAAAATGAAGTTCGCACACATC
GATGGTGATCACTTGActcttctaaatgtttatcatGCTTTCAAACAAAA
CCACGAAGAAACTCAATGGTGTTACGATAACTTCTTGAACAACCGATCGC
TCAAATCAGCTGACAATGTTCGCCAACAATTAGCTCGTATTATGGACAGG
TTCAATTTGAAACGCACCAGTACTGAGTTCAACAGTCGTGAATATTACGT
CAACATTCGAAAATCATTGGTCACTGGGTTCTTCATGCAGATTGCACATT
TGGAAAGGACTGGACACTACTTAACCGTCAAAGATAATCAGGTGGTACAA
TTGCATCCATCCACGTGTTTGGACCATAAACCTGAATGGGTTTTATACAA
TGAGTTCGTCTTGACCACCAAGAACTACATCAGAACATGTAGCGATGTCA
AACCTGAATGGTTGGTTAAGCTTGCTCCACAATATTACGATATGCGCAAC
TTCCCAAATTGCGAGGCGAAGAAAGTATTGGAACGTTTGATTAACAAAGC
CTATCGTCGACAACAAGAACAGTGAATAGCACCTGAGACATTGATGAGAG
CTTTAGAATTATTGAATTACTTGGACGCATTGAATGACGATGGTGATTTG
ACCGAGTTAGGTTCCATGATGGCGGAATTTCCATTGGATCCACAGTTGGC
CAAAATGGTCATTGCAAGTACAGATCACAACTGCTCAAATGAAGCTTTGT
CCATTGTCGCTATGCTCTCGGTTCAACAAGTATTCCAGCGACCGAATGAA
GCGAAGAAAGCTGCAGACGAAGCTAAAATGAAGTTCGCACACATCGATGG
TGATCACTTGActcttctaaatgtttatcatGCTTTCAAACAAAACCACG
AAGAAACTCAATGGTGTTACGATAACTTCTTGAACAACCGATCGCTCAAA
TCAGCTGACAATGTTCGCCAACAATTAGCTCGTATTATGGACAGGTTCAA
TTTGAAACGCACCAGTACTGAGTTCAACAGTCGTGAATATTACGTCAACA
TTCGAAAATCATTGGTCACTGGGTTCTTCATGCAGATTGCACATTTGGAA
AGGACTGGACACTACTTAACCGTCAAAGATAATCAGGTGGTACAATTGCA
TCCATCCACGTGTTTGGACCATAAACCTGAATGGGTTTTATACAATGAGT
TCGTCTTGACCACCAAGAACTACATCAGAACATGTAGCGATGTCAAACCT
GAATGGTTGGTTAAGCTTGCTCCACAATATTACGATATGCGCAACTTCCC
AAATTGCGAGGCGAAGAAAGTATTGGAACGTTTGATTAACAAAGCCTATC
GTCGACAACAAGAACAGTGAATAGCACCTGAGACATTGATGAGAGCTTTA
GAATTATTGAATTACTTGGACGCATTGAATGACGATGGTGATTTGACCGA
GTTAGGTTCCATGATGGCGGAATTTCCATTGGATCCACAGTTGGCCAAAA
TGGTCATTGCAAGTACAGATCACAACTGCTCAAATGAAGCTTTGTCCATT
GTCGCTATGCTCTCGGTTCAACAAGTATTCCAGCGACCGAATGAAGCGAA
GAAAGCTGCAGACGAAGCTAAAATGAAGTTCGCACACATCGATGGTGATC
ACTTGActcttctaaatgtttatcatGCTTTCAAACAAAACCACGAAGAA
ACTCAATGGTGTTACGATAACTTCTTGAACAACCGATCGCTCAAATCAGC
TGACAATGTTCGCCAACAATTAGCTCGTATTATGGACAGGTTCAATTTGA
AACGCACCAGTACTGAGTTCAACAGTCGTGAATATTACGTCAACATTCGA
AAATCATTGGTCACTGGGTTCTTCATGCAGATTGCACATTTGGAAAGGAC
TGGACACTACTTAACCGTCAAAGATAATCAGGTGGTACAATTGCATCCAT
CCACGTGTTTGGACCATAAACCTGAATGGGTTTTATACAATGAGTTCGTC
TTGACCACCAAGAACTACATCAGAACATGTAGCGATGTCAAACCTGAATG
GTTGGTTAAGCTTGCTCCACAATATTACGATATGCGCAACTTCCCAAATT
GCGAGGCGAAGAAAGTATTGGAACGTTTGATTAACAAAGCCTATCGTCGA
CAACAAGAACAGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008652XLOC_008652Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015499-proteinTCONS_00015499-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015499-exon-sc0000212-1491911889:72777..72981TCONS_00015499-exon-sc0000212-1491911889:72777..72981Clytia hemisphaericaexon
TCONS_00015499-exon-sc0000212-1510915933:72777..72981TCONS_00015499-exon-sc0000212-1510915933:72777..72981Clytia hemisphaericaexon
TCONS_00015499-exon-sc0000212-1575043694:72777..72981TCONS_00015499-exon-sc0000212-1575043694:72777..72981Clytia hemisphaericaexon
TCONS_00015499-exon-sc0000212-1491911889:73271..73333TCONS_00015499-exon-sc0000212-1491911889:73271..73333Clytia hemisphaericaexon
TCONS_00015499-exon-sc0000212-1510915933:73271..73333TCONS_00015499-exon-sc0000212-1510915933:73271..73333Clytia hemisphaericaexon
TCONS_00015499-exon-sc0000212-1575043694:73271..73333TCONS_00015499-exon-sc0000212-1575043694:73271..73333Clytia hemisphaericaexon
TCONS_00015499-exon-sc0000212-1491911889:74085..74136TCONS_00015499-exon-sc0000212-1491911889:74085..74136Clytia hemisphaericaexon
TCONS_00015499-exon-sc0000212-1510915933:74085..74136TCONS_00015499-exon-sc0000212-1510915933:74085..74136Clytia hemisphaericaexon
TCONS_00015499-exon-sc0000212-1575043694:74085..74136TCONS_00015499-exon-sc0000212-1575043694:74085..74136Clytia hemisphaericaexon
TCONS_00015499-exon-sc0000212-1491911889:74918..75108TCONS_00015499-exon-sc0000212-1491911889:74918..75108Clytia hemisphaericaexon
TCONS_00015499-exon-sc0000212-1510915933:74918..75108TCONS_00015499-exon-sc0000212-1510915933:74918..75108Clytia hemisphaericaexon
TCONS_00015499-exon-sc0000212-1575043694:74918..75108TCONS_00015499-exon-sc0000212-1575043694:74918..75108Clytia hemisphaericaexon
TCONS_00015499-exon-sc0000212-1491911889:76612..76662TCONS_00015499-exon-sc0000212-1491911889:76612..76662Clytia hemisphaericaexon
TCONS_00015499-exon-sc0000212-1510915933:76612..76662TCONS_00015499-exon-sc0000212-1510915933:76612..76662Clytia hemisphaericaexon
TCONS_00015499-exon-sc0000212-1575043694:76612..76662TCONS_00015499-exon-sc0000212-1575043694:76612..76662Clytia hemisphaericaexon
TCONS_00015499-exon-sc0000212-1491911889:77449..77567TCONS_00015499-exon-sc0000212-1491911889:77449..77567Clytia hemisphaericaexon
TCONS_00015499-exon-sc0000212-1510915933:77449..77567TCONS_00015499-exon-sc0000212-1510915933:77449..77567Clytia hemisphaericaexon
TCONS_00015499-exon-sc0000212-1575043694:77449..77567TCONS_00015499-exon-sc0000212-1575043694:77449..77567Clytia hemisphaericaexon
TCONS_00015499-exon-sc0000212-1491911889:78995..79553TCONS_00015499-exon-sc0000212-1491911889:78995..79553Clytia hemisphaericaexon
TCONS_00015499-exon-sc0000212-1510915933:78995..79553TCONS_00015499-exon-sc0000212-1510915933:78995..79553Clytia hemisphaericaexon
TCONS_00015499-exon-sc0000212-1575043694:78995..79553TCONS_00015499-exon-sc0000212-1575043694:78995..79553Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000212supercontigsc0000212:72777..79553 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
57.0827	50.3822	69.5752	61.963	4.21979	1.651	0.142404	4.35954	45.1991	32.4424	40.4529	30.7023	28.1602	32.9153	49.975	48.3184	37.3285	42.3006	28.54	27.5692	39.7211	41.903	39.8901	33.0287	7.84417	8.74202	33.4335	32.0759	23.0532	26.5688
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR007502Helicase-assoc_dom
IPR011709DUF1605
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0004386helicase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0004386 helicase activity
Blast
[Close]
BLAST of TCONS_00015499 vs. Swiss-Prot (Human)
Match: DHX15 (Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 OS=Homo sapiens GN=DHX15 PE=1 SV=2)

HSP 1 Score: 447.973 bits (1151), Expect = 1.203e-149
Identity = 220/263 (83.65%), Postives = 238/263 (90.49%), Query Frame = 2 
Query:    5 APETLMRALELLNYLDALNDDGDLTELGSMMAEFPLDPQLAKMVIASTDHNCSNEALSIVAMLSVQQVFQRPNEXXXXXXXXXXXXXHIDGDHLTLLNVYHAFKQNHEETQWCYDNFLNNRSLKSADNVRQQLARIMDRFNLKRTSTEFNSREYYVNIRKSLVTGFFMQIAHLERTGHYLTVKDNQVVQLHPSTCLDHKPEWVLYNEFVLTTKNYIRTCSDVKPEWLVKLAPQYYDMRNFPNCEAKKVLERLINKAYRRQQEQ 793
            APETLMRALELLNYL ALNDDGDLTELGSMMAEFPLDPQLAKMVIAS D+NCSNE LSI AMLSV Q F RP EAKKAADEAKM+FAHIDGDHLTLLNVYHAFKQNHE  QWCYDNF+N RSL SADNVRQQL+RIMDRFNL R ST+F SR+YY+NIRK+LVTG+FMQ+AHLERTGHYLTVKDNQVVQLHPST LDHKPEWVLYNEFVLTTKNYIRTC+D+KPEWLVK+APQYYDM NFP CEAK+ L+R+I K   ++  Q
Sbjct:  532 APETLMRALELLNYLAALNDDGDLTELGSMMAEFPLDPQLAKMVIASCDYNCSNEVLSITAMLSVPQCFVRPTEAKKAADEAKMRFAHIDGDHLTLLNVYHAFKQNHESVQWCYDNFINYRSLMSADNVRQQLSRIMDRFNLPRRSTDFTSRDYYINIRKALVTGYFMQVAHLERTGHYLTVKDNQVVQLHPSTVLDHKPEWVLYNEFVLTTKNYIRTCTDIKPEWLVKIAPQYYDMSNFPQCEAKRQLDRIIAKLQSKEYSQ 794
The following BLAST results are available for this feature:
BLAST of TCONS_00015499 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DHX151.203e-14983.65Pre-mRNA-splicing factor ATP-dependent RNA helicas... [more]
back to top