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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015496 ID=TCONS_00015496|Name=TCONS_00015496|organism=Clytia hemisphaerica|type=transcript|length=1483bp
TATGTACTGGTATGTTCGACAACGCAGCAAGCTAAACTTCAAAGTGCTCT
GGTGACAACAGCAGTCTGTGCTCGCGTACCCAAGCCGCACATTTCTGCGG
ATAGTCGTAATTAAAAATTAACATGTTCAATTCACGGTCTGGAAAGCAAA
GGCTTTATCTACTTCCCAGAGCTGCTGAAGTCAATATCGTTGCTTTCTTC
TATCACTATCTTTTtcaatttacaagtttttttgctACTACTTTATAGCA
CCTGAGACATTGATGAGAGCTTTAGAATTATTGAATTACTTGGACGCATT
GAATGACGATGGTGATTTGACCGAGTTAGGTTCCATGATGGCGGAATTTC
CATTGGATCCACAGTTGGCCAAAATGGTCATTGCAAGTACAGATCACAAC
TGCTCAAATGAAGCTTTGTCCATTGTCGCTATGCTCTCGGTTCAACAAGT
ATTCCAGCGACCGAATGAAGCGAAGAAAGCTGCAGACGAAGCTAAAATGA
AGTTCGCACACATCGATGGTGATCACTTGActcttctaaatgtttatcat
GCTTTCAAACAAAACCACGAAGAAACTCAATGGTGTTACGATAACTTCTT
GAACAACCGATCGCTCAAATCAGCTGACAATGTTCGCCAACAATTAGCTC
GTATTATGGACAGGTTCAATTTGAAACGCACCAGTACTGAGTTCAACAGT
CGTGAATATTACGTCAACATTCGAAAATCATTGGTCACTGGGTTCTTCAT
GCAGATTGCACATTTGGAAAGGACTGGACACTACTTAACCGTCAAAGATA
ACCAGGTGGTACAATTGCATCCATCCACGTGTTTGGACCATAAACCTGAA
TGGGTTTTATACAATGAGTTCGTCTTGACCACCAAGAACTACATCAGAAC
ATGTAGCGATGTCAAACCTGAATGGTTGGTTAAGCTTGCTCCACAATATT
ACGATATGCGCAACTTCCCAAATTGCGAGGCGAAGAAAGTATTGGAACGT
TTGATTAACAAAGCCTATCGTCGACAACAAGAACAGTGAATAACTGGGAA
AGTTATAAATATCGTGAATTTTTATGAGTATTATCTACAACATGAACAGT
ATTTAAGGAGGTGACGATCAAGGTATTGTACGTAGAAAAGAGACAGGCCT
CTGTGCCAAACAATTTTAAAGGACATGTCTAGGGTTTAGTTGTTATAAAA
CTTGCCCGTAAAACCGGCTTACCGTTTGAAGTATCAGCTAAAGGTTAAGC
CTTGATGCCCAATTTCGAACAGGTATCTTCAAGGATAATTGTGTTACAAT
TGTATTGACTTGGTAACAATGGATATTGATTATTTAGATGGATAATATTA
TCAACACAACAGAATACATAACACAAGTTTTTTAATCTTTAAGATCGTCA
ATTTTCTCTTAGGACTTTTCCACTTTTATTAGCCCGCGGGGTCTACTGAA
GGCCATATAGACTGGATGATGCGCTTAAGCAGG Run BLAST on NCBI transcript from alignment at sc0000212:72534..79553+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00015496 ID=TCONS_00015496|Name=TCONS_00015496|organism=Clytia hemisphaerica|type=transcript|length=7020bp|location=Sequence derived from alignment at sc0000212:72534..79553+ (Clytia hemisphaerica)
TATGTACTGGTATGTTCGACAACGCAGCAAGCTAAACTTCAAAGTGCTCT
GGTGACAACAGCAGTCTGTGCTCGCGTACCCAAGCCGCACATTTCTGCGG
ATAGTCGTAATTAAAAATTAACATGTTCAATTCACGGTCTGGAAAGCAAA
GGCTTTATCTACTTCCCAGAGCTGCTGAAGTCAATATCGTTGCTTTCTTC
TATCACTATCTTTTtcaatttacaagtttttttgctACTACTTTATAGCA
CCTGAGACATTGATGAGAGCTTTAGAATTATTGAATTACTTGGACGCATT
GAATGACGATGGTGATTTGACCGAGTTAGGTTCCATGATGGCGGAATTTC
CATTGGATCCACAGTTGGCCAAAATGGTCATTGCAAGTACAGATCACAAC
TGCTCAAATGAAGCTTTGTCCATTGTCGCTATGCTCTCGGTTCAACAAGT
AATAATGATTTTCTTTTGCCTAAAAATATCTCTTTGAGTAGCGTTTGGGT
TTAAAacattgtcaaaaatattttatctccGCCTCAGCAAATTGCTCTCC
ATTTCGCAATATATTGGAAGACCCCATTGATTTGTAGATTGTGTAAATTT
GAGAAACAAAGGTGGAGTTGACTAGTCTTAGTTGAAATTTATATTGTCTG
TTCTAATTATCATCCTACTTTAAATGTCTTGAAATTCAATtcataatttc
atttttccaatacCAAAAATCCATTAACTTTGAACAGGTATTCCAGCGAC
CGAATGAAGCGAAGAAAGCTGCAGACGAAGCTAAAATGAAGTTCGCACAC
ATCGATGGTGATCACTTGACTCTTCNTTACCCAAGCCGCACATTTCTGCG
GATAGTCGTAATTAAAAATTAACATGTTCAATTCACGGTCTGGAAAGCAA
AGACTTTATCTACTTCCCAGAACTGCTGAAGTCAATATCGTTGCTTTCTT
CTATCACTATCTTTTtcaatttacaagtttttttgctACTACTTTATAGC
ACCTGAGACGTTGATGAGAGCTTTAGAATTATTGAATTACTTGGACGCAT
TGAATGACGATGGTGATTTGACCGAGTTAGGTTCCATGATGGCGGAATTT
CCATTGGATCCACAGTTGGCCAAAATGGTCATTGCAAGTACAGATCACAA
CTGCTCAAATGAAGCTTTGTCCATTGTCGCTATGCTCTCGGTTCAACAAG
TAATAATGATTTTCTTTTGCCTAAAAATATCTCTTTGAGTAGCGTTTGGG
TTTAAAacattgtcaaaaatattttatctccGCCTCAGCAAATTGCTCTC
CATTTCGCAATATATTGGAAGACCCCATTGATTTGTAGATTGTGTAAATT
TGAGAAACAAAGGTGGAGTTGACTAGTCTTAGTTGAAATTTATATTGTCT
GTTCTAATTATCATCCTACTTTAAATGTCTTGAAATTCAATtcataattt
catttttccaatacCAAGAATCCATTAACTTTGAACAGGTATTCCAGCGA
CCGAATGAAGCGAAGAAAGCTGCAGACGAAGCTAAAATGAAGTTCGCACA
CATCGATGGTGATCACTTGActcttctaaatgtttatcatGCTTTCAAAC
AAAGTAAGTGATGACAACGTACTTTAGAAGCTATATTCAGTGCATCGAGC
ATTGTTTGTAGTTAATTCAGGTTAATTGTTCAATGGTAtagaaatgggct
tttccagaaaaaaatcgtgcaccccctgttgaggaggtccaatggggtaa
ggtttgaaatgcagtggaattccataggggtagacgaaaatccgtcaaaa
ataagcggaattccaagggggtaatgattagaaatttgtaaaaattcgga
attccagaggggtatgatcctaaaattggcTGGAATTCCAAgagggtagg
tcacaaaaggttggacctcctcaacaggggatgcacggtttttttctgga
aaagcccaatgttaAATTTGTAATTCCAAACGGTTGGTGAAAATAACCTA
TTATTATAATCCTGGTACTCAAAGGTAGGCAATTTTTAAAACTCGTGTTT
CAATATCTATAATCCTTCTAACATGTAAATGTAACAAGTAGCACTCCTCT
CGAGTAAAATGCATCACTGGCCCGGAGTAATCTACACCTCAATATTCGCG
CAAATTTattattcttccaggaagtaaaATTTTATTTCCTGTAAGTTTAT
TTTACTCATAAGAAGATTGTAGGCTTGGTATACATTAAAGATTTGATAAG
TGTTTTACCACTTTGGAGCGCTATGCATGTTTATTTCAGTGCTATACTCA
TAAACAaagctttttttctttgtcactTTCGAGATTATTCAAAATGTTGC
GTCTCATGAAACAAACGATCATAATATATTTCAGACCACGAAGAAACTCA
ATGGTGTTACGATAACTTCTTGAACAACCGATCGCTCAAATCAGCTGACA
ATGTTCGCCAACAATTAGCTCGTATTATGGACAGGTTCAATTTGAAACGC
ACCAGTACTGAGTTCAACAGTCGTGAATATTACGTCAACATTCGAAAATC
ATTGGTCACTGGGTTCTTCATGCAGGTGcgcttttcttttcctttttcat
tttcttggtaGAACCTCAAGACGTTCAATcaaattgggctattccagaaa
tagtctgtaccccatGTTGAGGAGATGTGACGTCCACAGTGGGTTCGACt
gacaattcctgcattaataacacgcatgcgtaatttgtcgttcttttaga
ccacaagtagttatttcccgtggggtggtacagtcactctcggtcggggt
tgtggacggctaaatgtgaaatttgtcgttcttttttgtcgttttttatg
aaatttgtcgttcttttgtctatttttagtaatgcaggaattGTAAGATA
GAGGCTCTCCCAGGGTGgtctagaaaataaaaaatccagggtggtcagta
aaatcgggttgaaaatccagggtggtccaaagaaatgggaaaaattgccc
tgaaaaattgggaaaaaatccAGAGGGtcacatttaaaaaaagaagatcT
CAACTTAACGGGGTACAATTtctttctggaatagcccatttctTTCTACC
AGTTTTAACTCCTTAGCCGAATGCTGATTATATCGCTGATCGTATCCCTG
ATTGTATCCCTCTCCTTAATTATAGCAGTAGCTAGAAacgttttctatat
tttttacgCCTTATTCAGCCGTTTGGCAGGCCAACTTAATTGAACTTTTG
TCATTGAGAATCCTTTGTCTCAGTGCCGTGGTGTCGTGATACATGTTTTG
GTATAGGGGGAGGGAAGGACAACCTATTCAAAAGATACATACCAATCTTT
TTTCAGTCTTTCTTTGTCTTAATCCATTCTGTAATGTCAAATTCCCAATG
AAGaattttatttcacttttgactttttattttcgGGTGGGGTCAAAAAA
CTTGTCTCGTCTTAAGTAAGTAAGATTGCGACCGCAGTcaagggcgaccc
gaaggctcccttttcgtatagctgtctacccgaaggtaggggagggcgcc
actcctttccctggatttctccacttacccttgatccgtctctttagttg
ctgggcatcaagcagagaggcaccaagtaccattttgggaatctttggta
tgacccggctggggatcgaacccacaattttgcgcaccgtagctggatgc
tctaccctCATGCTACGGTCGCTAACGTCTCGGCTTACTAGTATAGTATA
GACCTGTAAAAATCTCATATGATGCCAGTACCACTTTGGGGTTTTATTAA
GAGTTCTCTCTAccttcaaaataaaagaaattatgaaaaataatcTATCC
gcttttttatatcttttgaaTAGATAACGGTCCTTCCCTGACATTTGATG
AAAAAGGGAATAGCTAGAATGTATCACACACCACCTTTGTGTGAAGGGGT
CCCATCGGTCTTTCCTTCGATAGGTTCTAAGGAGGAGAAGGAGCCGGTGG
TAGGAGATTCTATATGAACATTAACTAAACGTAAAAACTCCCTATTCCAT
CTTGTGTGTGATTGGTTGGTTGGTACAGATTGCACATTTGGAAAGGACTG
GACACTACTTAACCGTCAAAGATAATCAGGTAAGTAGNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNG
TAAAAATCTCATATGATGCCAGTACCACTTTGGGGTTTTATTAAGAGTTC
TCTCTAccttcaaaataaaagaaattatgaaaaataatcTATCCgctttt
ttatatcttttgaaTAGATAACGGTCCTTCCCTGACATTTGATGAAAAAG
GGAATAGCTAGAATGTATCACACACCACCTTTGTGTGAAGGGGTCCCATC
GGTCTTTCCTTCGATAGGTTCTAAGGAGGAGAAGGAGCCGGTGGTAGGAG
ATTCTATATGAACATTAACTAAACGTAAAAACTCCCTATTCCATCTTGTG
TGTGATTGGTTGGTTGGTACAGATTGCACATTTGGAAAGGACTGGACACT
ACTTAACCGTCAAAGATAACCAGGTAAGTAGTTATAGAAACAAATTTCTC
TTTTTGGGTgtcctttttgtttttattgaaattactTCGATTCTCTCTGA
AGCAAGTTTACTTTAAAAGATATTTACAATGTGAGGCTGCCACTTCTTTC
TAATAAAAATCGTTCACGGAAATTACtgaaaattcttcttttctgcGTTT
CATACTGTCATCTGTCTTTTTCACCAACTTCAAGGTCATATATAATCTTA
TTTCTTTTTAACACTCATTTTAACAATTTCTTGTTTCTCTCCATAATTTC
ACCGAATAATAACAGGTGGTACAATTGCATCCATCCACGTGTTTGGACCA
TAAACCTGAATGGGTTTTATACAATGAGTTCGTCTTGACCACCAAGAACT
ACATCAGAACATGTAGCGATGTCAAACCTGAATGGTAAGAACATATATTT
TTGCCAGAAGTTGGTACCAGTGTTTGACGATATTACGAAAATCATTATAA
CCCaacaaaatatcttttcaaaaaaataaaagttaaactctTCTTTGTTA
TACagaaaacatctatctcataaattGAATATTATTCTGGCCTTCTCTGG
TAGTCTAGCCTGCCAAGGCAAAAAATAACGAAAGGGTCAGATTAAGTTCA
CACAAACTGATATGCTCCCGTTACGACTGTTGTATGTTGTATTAGTATAT
AACAGCAATATTACTGTATACATGGATTATAAACGATATTATTCTAGCCT
TCTGGTTGTGCAAAGGCTCCTTTTAATACTCCTCgtagtgtccttcaggg
tctcttccccccatgcctagaatgaaaattttccatccccccTCATTTTT
CCCCACCCTGCCTCCAAAAATTTNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Ntatacgtccttttgacctcaaaacccatcccccctgaatccaggggggg
gaggacactatgctcCTGTTTCCCTCACGATATAACAAGTCTCAATTTCT
ATTTGGTTTAGGTTGGTTAAGCTTGCTCCACAATATTACGATATGCGCAA
CTTCCCAAATTGCGAGGCGAAGAAAGTATTGGAACGTTTGATTAACAAAG
CCTATCGTCGACAACAAGAACAGTGAATAACTGGGAAAGTTATAAATATC
GTGAATTTTTATGAGTATTATCTACAACATGAACAGTATTTAAGGAGGTG
ACGATCAAGGTATTGTACGTAGAAAAGAGACAGGCCTCTGTGCCAAACAA
TTTTAAAGGACATGTCTAGGGTTTAGTTGTTATAAAACTTGCCCGTAAAA
CCGGCTTACCGTTTGAAGTATCAGCTAAAGGTTAAGCCTTGATGCCCAAT
TTCGAACAGGTATCTTCAAGGATAATTGTGTTACAATTGTATTGACTTGG
TAACAATGGATATTGATTATTTAGATGGATAATATTATCAACACAACAGA
ATACATAACACAAGTTTTTTAATCTTTAAGATCGTCAATTTTCTCTTAGG
ACTTTTCCACTTTTATTAGCCCGCGGGGTCTACTGAAGGCCATATAGACT
GGATGATGCGCTTAAGCAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00015496-exon-sc0000212-1491911889:72534..72981 | TCONS_00015496-exon-sc0000212-1491911889:72534..72981 | Clytia hemisphaerica | exon |
| TCONS_00015496-exon-sc0000212-1510915933:72534..72981 | TCONS_00015496-exon-sc0000212-1510915933:72534..72981 | Clytia hemisphaerica | exon |
| TCONS_00015496-exon-sc0000212-1575043694:72534..72981 | TCONS_00015496-exon-sc0000212-1575043694:72534..72981 | Clytia hemisphaerica | exon |
| TCONS_00015496-exon-sc0000212-1491911889:74022..74136 | TCONS_00015496-exon-sc0000212-1491911889:74022..74136 | Clytia hemisphaerica | exon |
| TCONS_00015496-exon-sc0000212-1510915933:74022..74136 | TCONS_00015496-exon-sc0000212-1510915933:74022..74136 | Clytia hemisphaerica | exon |
| TCONS_00015496-exon-sc0000212-1575043694:74022..74136 | TCONS_00015496-exon-sc0000212-1575043694:74022..74136 | Clytia hemisphaerica | exon |
| TCONS_00015496-exon-sc0000212-1491911889:74918..75108 | TCONS_00015496-exon-sc0000212-1491911889:74918..75108 | Clytia hemisphaerica | exon |
| TCONS_00015496-exon-sc0000212-1510915933:74918..75108 | TCONS_00015496-exon-sc0000212-1510915933:74918..75108 | Clytia hemisphaerica | exon |
| TCONS_00015496-exon-sc0000212-1575043694:74918..75108 | TCONS_00015496-exon-sc0000212-1575043694:74918..75108 | Clytia hemisphaerica | exon |
| TCONS_00015496-exon-sc0000212-1491911889:77106..77156 | TCONS_00015496-exon-sc0000212-1491911889:77106..77156 | Clytia hemisphaerica | exon |
| TCONS_00015496-exon-sc0000212-1510915933:77106..77156 | TCONS_00015496-exon-sc0000212-1510915933:77106..77156 | Clytia hemisphaerica | exon |
| TCONS_00015496-exon-sc0000212-1575043694:77106..77156 | TCONS_00015496-exon-sc0000212-1575043694:77106..77156 | Clytia hemisphaerica | exon |
| TCONS_00015496-exon-sc0000212-1491911889:77449..77567 | TCONS_00015496-exon-sc0000212-1491911889:77449..77567 | Clytia hemisphaerica | exon |
| TCONS_00015496-exon-sc0000212-1510915933:77449..77567 | TCONS_00015496-exon-sc0000212-1510915933:77449..77567 | Clytia hemisphaerica | exon |
| TCONS_00015496-exon-sc0000212-1575043694:77449..77567 | TCONS_00015496-exon-sc0000212-1575043694:77449..77567 | Clytia hemisphaerica | exon |
| TCONS_00015496-exon-sc0000212-1491911889:78995..79553 | TCONS_00015496-exon-sc0000212-1491911889:78995..79553 | Clytia hemisphaerica | exon |
| TCONS_00015496-exon-sc0000212-1510915933:78995..79553 | TCONS_00015496-exon-sc0000212-1510915933:78995..79553 | Clytia hemisphaerica | exon |
| TCONS_00015496-exon-sc0000212-1575043694:78995..79553 | TCONS_00015496-exon-sc0000212-1575043694:78995..79553 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000212 | supercontig | sc0000212:72534..79553 + |
Blast
BLAST of TCONS_00015496 vs. Swiss-Prot (Human)
Match: DHX15 (Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 OS=Homo sapiens GN=DHX15 PE=1 SV=2) HSP 1 Score: 447.203 bits (1149), Expect = 3.557e-148 Identity = 220/263 (83.65%), Postives = 238/263 (90.49%), Query Frame = 2
Query: 248 APETLMRALELLNYLDALNDDGDLTELGSMMAEFPLDPQLAKMVIASTDHNCSNEALSIVAMLSVQQVFQRPNEXXXXXXXXXXXXXHIDGDHLTLLNVYHAFKQNHEETQWCYDNFLNNRSLKSADNVRQQLARIMDRFNLKRTSTEFNSREYYVNIRKSLVTGFFMQIAHLERTGHYLTVKDNQVVQLHPSTCLDHKPEWVLYNEFVLTTKNYIRTCSDVKPEWLVKLAPQYYDMRNFPNCEAKKVLERLINKAYRRQQEQ 1036
APETLMRALELLNYL ALNDDGDLTELGSMMAEFPLDPQLAKMVIAS D+NCSNE LSI AMLSV Q F RP EAKKAADEAKM+FAHIDGDHLTLLNVYHAFKQNHE QWCYDNF+N RSL SADNVRQQL+RIMDRFNL R ST+F SR+YY+NIRK+LVTG+FMQ+AHLERTGHYLTVKDNQVVQLHPST LDHKPEWVLYNEFVLTTKNYIRTC+D+KPEWLVK+APQYYDM NFP CEAK+ L+R+I K ++ Q
Sbjct: 532 APETLMRALELLNYLAALNDDGDLTELGSMMAEFPLDPQLAKMVIASCDYNCSNEVLSITAMLSVPQCFVRPTEAKKAADEAKMRFAHIDGDHLTLLNVYHAFKQNHESVQWCYDNFINYRSLMSADNVRQQLSRIMDRFNLPRRSTDFTSRDYYINIRKALVTGYFMQVAHLERTGHYLTVKDNQVVQLHPSTVLDHKPEWVLYNEFVLTTKNYIRTCTDIKPEWLVKIAPQYYDMSNFPQCEAKRQLDRIIAKLQSKEYSQ 794
The following BLAST results are available for this feature:
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