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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015493 ID=TCONS_00015493|Name=TCONS_00015493|organism=Clytia hemisphaerica|type=transcript|length=681bp
TGGAGAGCTGGTTTCAGTTAGAAGATACTAAAGTCACCATGGTTGGGCAG
AAGACAAAAGTTTTAAACTGTGTGGTTATTATATTTTTCGCAACAATTTG
TACGTTGCTGTGGAACATGTCTTATTCATCAAGATGGACGACTATGCTCA
AAAGTCCAAACTATAAACCAAACAGTTCTTTAATCAAGCTATCTGGAGAG
ACCGATAACGGAAAATATAGTCCTTTGCAAAATGATTCATTGAAAAAACC
AAGTCATAGGACGAACATATCATTTTTCAACCAAACGAGCGAAACTGTTC
CAAACAACGTTCTAAGAAACGaatctttgaaatctttcttcAACCGATCT
GATGATacattttcggacaaatacaaTCTTTTGCGAAACGAGTCTCAAGT
GCCGTTTGAAGTTTGCAAGACTTTTAAATACTCGCCTGCAGATTGGACAC
TCTACGAGCTGACAAGCTATGACAATACAATAGAAAACCTAACTTGTAAT
AATCTATACAAAAGTCTTTTTAAGGACGAAGTAATGGTATACAAAAAGTA
TGGGAAGGAATTAAAGCGATCTAATAAACGAGTCAAATGGATTGTCCACA
CAGATGGAACAATCACTTCTTTGGGATGTACAAAACACACTCGAGAATGT
GAACCAGGACCATTTTATGATTATAAACGNN Run BLAST on NCBI protein sequence of TCONS_00015493-protein >TCONS_00015493-protein ID=TCONS_00015493-protein|Name=TCONS_00015493-protein|organism=Clytia hemisphaerica|type=polypeptide|length=226bp
ESWFQLEDTKVTMVGQKTKVLNCVVIIFFATICTLLWNMSYSSRWTTMLK
SPNYKPNSSLIKLSGETDNGKYSPLQNDSLKKPSHRTNISFFNQTSETVP
NNVLRNESLKSFFNRSDDTFSDKYNLLRNESQVPFEVCKTFKYSPADWTL
YELTSYDNTIENLTCNNLYKSLFKDEVMVYKKYGKELKRSNKRVKWIVHT
DGTITSLGCTKHTRECEPGPFYDYKX Run BLAST on NCBI transcript from alignment at sc0000212:14254..16068+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00015493 ID=TCONS_00015493|Name=TCONS_00015493|organism=Clytia hemisphaerica|type=transcript|length=1815bp|location=Sequence derived from alignment at sc0000212:14254..16068+ (Clytia hemisphaerica)
TGGAGAGCTGGTTTCAGTTAGGTGATGATGACTTTATTGTGCTTTACGGT
ATTACgaaacccccttctcacagacccggtaggattttttcattaAGCGG
GGGTTCAATAAATAtgggaccaaaactcgatggggattgatattcccatg
ttttttatggctggagattTAAATTCCATTGGTTTCGAGTCACAAAACTT
AGTgggatgaaaaaaaaacacaagatTTTACAGTGAGGTTTATCTGATta
atttcagtggggacaaaagttagagtataattttttcactgggaatgata
ttttggccaatttttccagtggaaaggggtcccagtgggtctgtgagaag
ggggtgtattaagACCGACAGATCTCGATCATCTGGGTAAGGGCTTTCTA
CAACCCTTGGTTCAAGCACTTTGTTCTGATTGTTGTCCATTGTGGAAAGA
AACGGTTTCACGGTTTTTCGTCTTTTGGTAAATGAGTTCTGGCaagattt
tatttcatttattaatGCTAAACCTGATTAGTCGATCTAAGAGAGAGGGA
GGGGGTAAAAAGAGACTGGGCGATATTTCGCTTCACTGTGTACTGTACGG
GTTGAAACTTGATGGCTAAATCTATGTTTGAATAGTCGCTTCCAGATCGA
ATCCTTTCAGGTTCAACAGCGAAAAAGAATATGTTAAAAAAATGTAGGGT
AACAGAAAGACTAATATTTGAACTTTCGATGGATTAAACTATTattaaaa
aatttcgcgtgtaatttttgagtaatttgaccATTGCTTGATATATGACA
CTTCTTTTGATTTAGCGACAGACTTATCTGTTGGGTTTTTTGGCAAACGA
TATTATCATCCAGACAGAAGAGAGAAATTGTAGGGACTATTCGAAAAAAT
GGAAGAGGAACTAAAACACTGTTTATATTTGAAGAAATTAAAAGTTGGTC
TCTCTAGAAAATTACACGGTGGAAAAGCTTTAGCTGACGGGGATAAAATG
AAGGGGCAAAATAGGGATAGGGTTTTTTAACGTGTATATCAAAGACTAAC
ATCAATTAAGGTAAAAGGTAAAATTTTCCGCTTTTTAGTATAAGAATAAG
AAGTAAATTATCAttgatgatgaaacttaagAAATTATCCATTCATTATT
TTCAGAAGATACTAAAGTCACCATGGTTGGGCAGAAGACAAAAGTTTTAA
ACTGTGTGGTTATTATATTTTTCGCAACAATTTGTACGTTGCTGTGGAAC
ATGTCTTATTCATCAAGATGGACGACTATGCTCAAAAGTCCAAACTATAA
ACCAAACAGTTCTTTAATCAAGCTATCTGGAGAGACCGATAACGGAAAAT
ATAGTCCTTTGCAAAATGATTCATTGAAAAAACCAAGTCATAGGACGAAC
ATATCATTTTTCAACCAAACGAGCGAAACTGTTCCAAACAACGTTCTAAG
AAACGaatctttgaaatctttcttcAACCGATCTGATGATacattttcgg
acaaatacaaTCTTTTGCGAAACGAGTCTCAAGTGCCGTTTGAAGTTTGC
AAGACTTTTAAATACTCGCCTGCAGATTGGACACTCTACGAGCTGACAAG
CTATGACAATACAATAGAAAACCTAACTTGTAATAATCTATACAAAAGTC
TTTTTAAGGACGAAGTAATGGTATACAAAAAGTATGGGAAGGAATTAAAG
CGATCTAATAAACGAGTCAAATGGATTGTCCACACAGATGGAACAATCAC
TTCTTTGGGATGTACAAAACACACTCGAGAATGTGAACCAGGACCATTTT
ATGATTATAAACGNN Coding sequence (CDS) from alignment at sc0000212:14254..16068+ >TCONS_00015493 ID=TCONS_00015493|Name=TCONS_00015493|organism=Clytia hemisphaerica|type=CDS|length=1356bp|location=Sequence derived from alignment at sc0000212:14254..16068+ (Clytia hemisphaerica)
GAGAGCTGGTTTCAGTTAGAAGATACTAAAGTCACCATGGTTGGGCAGAA
GACAAAAGTTTTAAACTGTGTGGTTATTATATTTTTCGCAACAATTTGTA
CGTTGCTGTGGAACATGTCTTATTCATCAAGATGGACGACTATGCTCAAA
AGTCCAAACTATAAACCAAACAGTTCTTTAATCAAGCTATCTGGAGAGAC
CGATAACGGAAAATATAGTCCTTTGCAAAATGATTCATTGAAAAAACCAA
GTCATAGGACGAACATATCATTTTTCAACCAAACGAGCGAAACTGTTCCA
AACAACGTTCTAAGAAACGaatctttgaaatctttcttcAACCGATCTGA
TGATacattttcggacaaatacaaTCTTTTGCGAAACGAGTCTCAAGTGC
CGTTTGAAGTTTGCAAGACTTTTAAATACTCGCCTGCAGATTGGACACTC
TACGAGCTGACAAGCTATGACAATACAATAGAAAACCTAACTTGTAATAA
TCTATACAAAAGTCTTTTTAAGGACGAAGTAATGGTATACAAAAAGTATG
GGAAGGAATTAAAGCGATCTAATAAACGAGTCAAATGGATTGTCCACACA
GATGGAACAATCACTTCTTTGGGATGTACAAAACACACTCGAGAATGTGA
ACCAGGACCATTTTATGATTATAAACGNGAGAGCTGGTTTCAGTTAGAAG
ATACTAAAGTCACCATGGTTGGGCAGAAGACAAAAGTTTTAAACTGTGTG
GTTATTATATTTTTCGCAACAATTTGTACGTTGCTGTGGAACATGTCTTA
TTCATCAAGATGGACGACTATGCTCAAAAGTCCAAACTATAAACCAAACA
GTTCTTTAATCAAGCTATCTGGAGAGACCGATAACGGAAAATATAGTCCT
TTGCAAAATGATTCATTGAAAAAACCAAGTCATAGGACGAACATATCATT
TTTCAACCAAACGAGCGAAACTGTTCCAAACAACGTTCTAAGAAACGaat
ctttgaaatctttcttcAACCGATCTGATGATacattttcggacaaatac
aaTCTTTTGCGAAACGAGTCTCAAGTGCCGTTTGAAGTTTGCAAGACTTT
TAAATACTCGCCTGCAGATTGGACACTCTACGAGCTGACAAGCTATGACA
ATACAATAGAAAACCTAACTTGTAATAATCTATACAAAAGTCTTTTTAAG
GACGAAGTAATGGTATACAAAAAGTATGGGAAGGAATTAAAGCGATCTAA
TAAACGAGTCAAATGGATTGTCCACACAGATGGAACAATCACTTCTTTGG
GATGTACAAAACACACTCGAGAATGTGAACCAGGACCATTTTATGATTAT
AAACGN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00015493-exon-sc0000212-1491911889:14254..14274 | TCONS_00015493-exon-sc0000212-1491911889:14254..14274 | Clytia hemisphaerica | exon |
| TCONS_00015493-exon-sc0000212-1510915933:14254..14274 | TCONS_00015493-exon-sc0000212-1510915933:14254..14274 | Clytia hemisphaerica | exon |
| TCONS_00015493-exon-sc0000212-1575043694:14254..14274 | TCONS_00015493-exon-sc0000212-1575043694:14254..14274 | Clytia hemisphaerica | exon |
| TCONS_00015493-exon-sc0000212-1491911889:15409..16068 | TCONS_00015493-exon-sc0000212-1491911889:15409..16068 | Clytia hemisphaerica | exon |
| TCONS_00015493-exon-sc0000212-1510915933:15409..16068 | TCONS_00015493-exon-sc0000212-1510915933:15409..16068 | Clytia hemisphaerica | exon |
| TCONS_00015493-exon-sc0000212-1575043694:15409..16068 | TCONS_00015493-exon-sc0000212-1575043694:15409..16068 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000212 | supercontig | sc0000212:14254..16068 + |
Blast
The following BLAST results are available for this feature:
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