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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015488 ID=TCONS_00015488|Name=TCONS_00015488|organism=Clytia hemisphaerica|type=transcript|length=938bp
GGGTAAACGAACGACTCGATCGTTCACCTCTCAGGCAAGCAACCACTGAT
CGGATCAAAACGAAGGAAATTTTGCGTCGTATGCCATTCACAACCTCACT
TTTCGAGCATTTTTGTTTTGCCGAGATTTTATCAGCTAACCTGCTCATAA
AAATTGAGCATTCTCGGGCTACACCACCTGTAGCACCAAATACTAATGGG
GTGAAAGTCCCTTTCTCAACTTGAAGAATCCGTTCGTTGTATGCTCTCTT
CTTTTGCTTTTCAAGGGAAGTGAATGTAGTGCCAATAGATTTTATGCGAT
AGCTCGGGGCTAAAAGGTTGCAAACCTTCACGTCAAAAAATGCTCTTTGA
TACCTCTGCCAAAATCCATTAGCACTAACATCCGCCCTAGCTTCATTCCC
AGTAACAGATGAGCGTGGTAAATCGACCTGTTCACGAGACAAATCCATAT
GTCGATGGATTACGTAGCCGCCAAGATGGCAAGATAGCGCATGGTCGATT
GTGAAGTTGGCTGAGCAGGCACATTTGATGGGCAGTCGCTTCATTTCCCA
GCCATACCTCATGTGGAGTGCGTCAGCGAATTCACGTTTATTCAATACAA
AATTCTCTTCTTTCAGTGGAAGAGTGGTCAGCCACGAGGAAGCACCTTGA
GATGAAGCGATTTCCAAAGCTTTTTGGTTGATTGATGGGAGTTGTTGAAC
GATTTGATCGAGTGATCGTTTTTGTTCTCCAATTCGTTTAGCGGCTAGTG
ATTTCAACATCTTTTTCGATTGACTTGGATCAATTGATTCATCTGATTGT
GTTGTGATGCGCTCGACTAGCACTTTATTCGCCAAACGACTTGTTTCGTT
TTGAAATTTAGCCTCATCCTCGATGTTGATGATTCCAAGGCCTCCCATCT
TGATCGGAAACGAGAGGATCTTCCTTTCAATATCGGAG Run BLAST on NCBI protein sequence of TCONS_00015488-protein >TCONS_00015488-protein ID=TCONS_00015488-protein|Name=TCONS_00015488-protein|organism=Clytia hemisphaerica|type=polypeptide|length=312bp
SDIERKILSFPIKMGGLGIINIEDEAKFQNETSRLANKVLVERITTQSDE
SIDPSQSKKMLKSLAAKRIGEQKRSLDQIVQQLPSINQKALEIASSQGAS
SWLTTLPLKEENFVLNKREFADALHMRYGWEMKRLPIKCACSANFTIDHA
LSCHLGGYVIHRHMDLSREQVDLPRSSVTGNEARADVSANGFWQRYQRAF
FDVKVCNLLAPSYRIKSIGTTFTSLEKQKKRAYNERILQVEKGTFTPLVF
GATGGVARECSIFMSRLADKISAKQKCSKSEVVNGIRRKISFVLIRSVVA
CLRGERSSRSFT Run BLAST on NCBI transcript from alignment at sc0000211:352611..353548 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00015488 ID=TCONS_00015488|Name=TCONS_00015488|organism=Clytia hemisphaerica|type=transcript|length=938bp|location=Sequence derived from alignment at sc0000211:352611..353548 (Clytia hemisphaerica)
CTCCGATATTGAAAGGAAGATCCTCTCGTTTCCGATCAAGATGGGAGGCC
TTGGAATCATCAACATCGAGGATGAGGCTAAATTTCAAAACGAAACAAGT
CGTTTGGCGAATAAAGTGCTAGTCGAGCGCATCACAACACAATCAGATGA
ATCAATTGATCCAAGTCAATCGAAAAAGATGTTGAAATCACTAGCCGCTA
AACGAATTGGAGAACAAAAACGATCACTCGATCAAATCGTTCAACAACTC
CCATCAATCAACCAAAAAGCTTTGGAAATCGCTTCATCTCAAGGTGCTTC
CTCGTGGCTGACCACTCTTCCACTGAAAGAAGAGAATTTTGTATTGAATA
AACGTGAATTCGCTGACGCACTCCACATGAGGTATGGCTGGGAAATGAAG
CGACTGCCCATCAAATGTGCCTGCTCAGCCAACTTCACAATCGACCATGC
GCTATCTTGCCATCTTGGCGGCTACGTAATCCATCGACATATGGATTTGT
CTCGTGAACAGGTCGATTTACCACGCTCATCTGTTACTGGGAATGAAGCT
AGGGCGGATGTTAGTGCTAATGGATTTTGGCAGAGGTATCAAAGAGCATT
TTTTGACGTGAAGGTTTGCAACCTTTTAGCCCCGAGCTATCGCATAAAAT
CTATTGGCACTACATTCACTTCCCTTGAAAAGCAAAAGAAGAGAGCATAC
AACGAACGGATTCTTCAAGTTGAGAAAGGGACTTTCACCCCATTAGTATT
TGGTGCTACAGGTGGTGTAGCCCGAGAATGCTCAATTTTTATGAGCAGGT
TAGCTGATAAAATCTCGGCAAAACAAAAATGCTCGAAAAGTGAGGTTGTG
AATGGCATACGACGCAAAATTTCCTTCGTTTTGATCCGATCAGTGGTTGC
TTGCCTGAGAGGTGAACGATCGAGTCGTTCGTTTACCC Coding sequence (CDS) from alignment at sc0000211:352611..353548 >TCONS_00015488 ID=TCONS_00015488|Name=TCONS_00015488|organism=Clytia hemisphaerica|type=CDS|length=936bp|location=Sequence derived from alignment at sc0000211:352611..353548 (Clytia hemisphaerica)
TCCGATATTGAAAGGAAGATCCTCTCGTTTCCGATCAAGATGGGAGGCCT
TGGAATCATCAACATCGAGGATGAGGCTAAATTTCAAAACGAAACAAGTC
GTTTGGCGAATAAAGTGCTAGTCGAGCGCATCACAACACAATCAGATGAA
TCAATTGATCCAAGTCAATCGAAAAAGATGTTGAAATCACTAGCCGCTAA
ACGAATTGGAGAACAAAAACGATCACTCGATCAAATCGTTCAACAACTCC
CATCAATCAACCAAAAAGCTTTGGAAATCGCTTCATCTCAAGGTGCTTCC
TCGTGGCTGACCACTCTTCCACTGAAAGAAGAGAATTTTGTATTGAATAA
ACGTGAATTCGCTGACGCACTCCACATGAGGTATGGCTGGGAAATGAAGC
GACTGCCCATCAAATGTGCCTGCTCAGCCAACTTCACAATCGACCATGCG
CTATCTTGCCATCTTGGCGGCTACGTAATCCATCGACATATGGATTTGTC
TCGTGAACAGGTCGATTTACCACGCTCATCTGTTACTGGGAATGAAGCTA
GGGCGGATGTTAGTGCTAATGGATTTTGGCAGAGGTATCAAAGAGCATTT
TTTGACGTGAAGGTTTGCAACCTTTTAGCCCCGAGCTATCGCATAAAATC
TATTGGCACTACATTCACTTCCCTTGAAAAGCAAAAGAAGAGAGCATACA
ACGAACGGATTCTTCAAGTTGAGAAAGGGACTTTCACCCCATTAGTATTT
GGTGCTACAGGTGGTGTAGCCCGAGAATGCTCAATTTTTATGAGCAGGTT
AGCTGATAAAATCTCGGCAAAACAAAAATGCTCGAAAAGTGAGGTTGTGA
ATGGCATACGACGCAAAATTTCCTTCGTTTTGATCCGATCAGTGGTTGCT
TGCCTGAGAGGTGAACGATCGAGTCGTTCGTTTACC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00015488-exon-sc0000211-1491911889:352611..353548 | TCONS_00015488-exon-sc0000211-1491911889:352611..353548 | Clytia hemisphaerica | exon |
| TCONS_00015488-exon-sc0000211-1510915933:352611..353548 | TCONS_00015488-exon-sc0000211-1510915933:352611..353548 | Clytia hemisphaerica | exon |
| TCONS_00015488-exon-sc0000211-1575043694:352611..353548 | TCONS_00015488-exon-sc0000211-1575043694:352611..353548 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000211 | supercontig | sc0000211:352611..353548 . |
Blast
The following BLAST results are available for this feature:
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