TCONS_00015478 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015478
Unique NameTCONS_00015478
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1361

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015478 ID=TCONS_00015478|Name=TCONS_00015478|organism=Clytia hemisphaerica|type=transcript|length=1361bp
CAACTATTAAGCATGCAATTCAGCTTTACTACATCTCGTCATGTGGATGA
TTTTGAGGAGGTGACTTTAACGTGGGTGTAAGCAAGTGGTGCACCAGTAA
AAACTAGAGCTTTAACAGCATAACTattatttgaaagtttcaaacAAATT
GGAAAATTAATATCTGTCCCATTGAGATTCCTCATTTCTGTTTGTCTATG
TTCGTCAGGTGTAAAAAGGGTTATTTCTTCCAGAGAAAAACTAAAATTAC
GATAAAGTTCCGGCGAGGTTTCATATGAAGAGTGCTGACAATAAAAATTC
TCTCTCGAGGCACGAAATGTGGCTCTTAGTCTTGAACATTTTTTTGCATG
GCAGGATACTTTgtttcctgaaataaaaaaaaattccctgtCATGACTAT
TGCTTGTTGCAACAGAGCGTAAGGTTCCAGACTCTGGTGTTCCATAAATG
GTAACTGATTTTGGGACGGCAGTGGAAGTCTTATTGTTTGCTTTGGATGA
TGGAGTGTCCAAATTATTTGCATAGCTACCACCAAGCTCAAAGCCACAGC
TGCAAAATCTTGGTTTCTTACTATTTTTGTAACTATTGTTACAATTACTG
CACAGACCATAACCTCTTTCAGTCCATTTTACCGGGCCATTGGAAGCAGC
AGCATCAGGTTCCAAAGTTTGAGTGTCGGTTTTACAATATACATGGTCCA
TTAATGACTGCATTTCATGCTTtagattttttatgtttaagtcCAGGTAG
AGTACTCCAAGAACCAAGTCAAGGGGTCAGCAACGTATAAATCCAATCCA
ACGAATTAACCAGAGTTTTGTCCGGGTAGAGTAGTCCAAGAAGCAAGTCA
AGGGGTCAGCAACGTATAAATCCAATCCAACGAATTAAACAGAGTTTAGT
CCGGGTAGAGTAGTCCAAGAAGCAAGTCAAGGGGTCAAAATCCAATCCAA
CGTATTAACCAGAGTTAAGTCCAGGTAGAGTAGTCCAAGAAGCAAGTCAT
CGGGTCAGCAACGTATAAATCCAATCCAATATATTAACCAGAGTTAAGTC
AAGGTAGAGTAGTCCAAGAAGCAAGTCAAGGGGTCAAAATCCAATCCAAC
GTACTAACCAGAGTTAAGTCCAGGTAGAGTAGTCCAAGAAGCAAGTCAAG
GGGTCAAAATCCAATCCAACGTACTAACCAGAGTTAAGTCCAGGTAGAGT
AGTCCAAGAAGCAAGTCAAGGAGTCAGCAACGTAAATACAGGTAaagttt
cacaaaatttcagtaTTAGTACAAAAAGGCAAGATGTTCGGAAAAAATCG
AGAGAAACAATTTACTGTCCAAATCGACAGTTTGTCTTTCATTCTTCTAG
CTAAATGAAAA
Run BLAST on NCBI

transcript from alignment at sc0000211:439554..441142-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015478 ID=TCONS_00015478|Name=TCONS_00015478|organism=Clytia hemisphaerica|type=transcript|length=1589bp|location=Sequence derived from alignment at sc0000211:439554..441142- (Clytia hemisphaerica)
CAACTATTAAGCATGCAATTCAGCTTTACTACATCTCGTCATGTGGATGA
TTTTGAGGAGGTGACTTTAACGTGGGTGTAAGCAAGTGGTGCACCAGTAA
AAACTAGAGCTTTAACAGCATAACTATTATTTGAAAGTTTCAAACAAATT
GGAAAATTAATATCTGTCCCATTGAGATTCCTCATTTCTGTTTGTCTATG
TTCGTCAGGTGTAAAAAGGGTTATTTCTTCCAGAGAAAAACTAAAATTAC
GATAAAGTTCCGGCGAGGTTTCATATGAAGAGTGCTGACAATAAAAATTC
TCTCTCGAGGCACGAAATGTGGCTCTTAGTCTTGAACATTTTTTTGCATG
GCAGGATACTTTGTTTCCTGAAATAAAAAAAAATTCCCTGTCATGACTAT
TGCTTGTTGCAACAGAGCGTAAGGTTCCAGACTCTGGTGTTCCATAAATG
GTAACTGATTTTGGGACGGCAGTGGAAGTCTTATTGTTTGCTTTGGATGA
TGGAGTGTCCAAATTATTTGCATAGCTACCACCAAGCTCAAAGCCACAGC
TGCAAAATCTTGGTTTCTTACTATTTTTGTAACTATTGTTACAATTACTG
CACAGACCATAACCTCTTTCAGTCCATTTTACCGGGCCATTGGAAGCAGC
AGCATCAGGTTCCAAAGTTTGAGTGTCGGTTTTACAATATACATGGTCCA
TTAATGACTGCATTTCATGCTTTAGATTTTTTATGTTTAAGTCCAGGTAG
AGTACTCCAAGAACCAAGTCAAGGGGTCAGCAACGTATAAATCCAATCCA
ACGAATTAACCAGAGTTTTGTCCGGGTAGAGTAGTCCAAGAAGCAAGTCA
AGGGGTCAGCAACGTATAAATCCAATCCAACGAATTAAACAGAGTTTAGT
CCGGGTAGAGTAGTCCAAGAAGCAAGTCAAGGGGTCAAAATCCAATCCAA
CGTATTAACCAGAGTTAAGTCCAGGTAGAGTAGTCCAAGAAGCAAGTCAT
CGGGTCAGCAACGTATAAATCCAATCCAATATATTAACCAGAGTTAAGTC
AAGGTAGAGTAGTCCAAGAAGCAAGTCAAGGGGTCAAAATCCAATCCAAC
GTACTAACCAGAGTTAAGTCCAGGTAGAGTAGTCCAAGAAGCAAGTCATC
GGGTCAGCAACGTATAAATCCAATCCAATATATTAACCAGAGTTAAGTCA
AGGTAGAGTAGTCCAAGAAGCAAGTCAAGGGGTCAAAATCCAATCCAACG
TACTAACCAGAGTTAAGTCCAGGTAGAGTAGTCCAAGAAGCAAGTCATCG
GGTCAGCAACGTATAAATCCAATCCAATATATTAACCAGAGTTAAGTCAA
GGTAGAGTAGTCCAAGAAGCAAGTCAAGGGGTCAAAATCCAATCCAACGT
ACTAACCAGAGTTAAGTCCAGGTAGAGTAGTCCAAGAAGCAAGTCAAGGA
GTCAGCAACGTAAATACAGGTAAAGTTTCACAAAATTTCAGTATTAGTAC
AAAAAGGCAAGATGTTCGGAAAAAATCGAGAGAAACAATTTACTGTCCAA
ATCGACAGTTTGTCTTTCATTCTTCTAGCTAAATGAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008637XLOC_008637Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015478-exon-sc0000211-1575043694:440020..441142TCONS_00015478-exon-sc0000211-1575043694:440020..441142Clytia hemisphaericaexon
TCONS_00015478-exon-sc0000211-1575043694:439554..439791TCONS_00015478-exon-sc0000211-1575043694:439554..439791Clytia hemisphaericaexon
TCONS_00015478-exon-sc0000211-1510915933:440020..441142TCONS_00015478-exon-sc0000211-1510915933:440020..441142Clytia hemisphaericaexon
TCONS_00015478-exon-sc0000211-1510915933:439554..439791TCONS_00015478-exon-sc0000211-1510915933:439554..439791Clytia hemisphaericaexon
TCONS_00015478-exon-sc0000211-1491911889:440020..441142TCONS_00015478-exon-sc0000211-1491911889:440020..441142Clytia hemisphaericaexon
TCONS_00015478-exon-sc0000211-1491911889:439554..439791TCONS_00015478-exon-sc0000211-1491911889:439554..439791Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000211supercontigsc0000211:439554..441142 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.12884	1.10014	0.18259	0.357271	7.49951	7.64322	4.63841	6.52219	1.73581	3.73308	1.89727	2.80909	3.32477	2.78452	6.99494	6.1363	4.96342	5.58368	0.949388	0.717538	4.8237	3.87861	0.369801	1.51291	1.58712	3.3346	2.43235	1.62231	0.894944	0.975126
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00015478 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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