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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015469 ID=TCONS_00015469|Name=TCONS_00015469|organism=Clytia hemisphaerica|type=transcript|length=3266bpRun BLAST on NCBI transcript from alignment at sc0000211:158958..192077- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00015469 ID=TCONS_00015469|Name=TCONS_00015469|organism=Clytia hemisphaerica|type=transcript|length=33120bp|location=Sequence derived from alignment at sc0000211:158958..192077- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00015469 vs. Swiss-Prot (Human)
Match: DJC16 (DnaJ homolog subfamily C member 16 OS=Homo sapiens GN=DNAJC16 PE=2 SV=3) HSP 1 Score: 223.402 bits (568), Expect = 9.722e-61 Identity = 147/440 (33.41%), Postives = 243/440 (55.23%), Query Frame = 3
Query: 165 RKMK-SLKFVAILLLIAKTLSAVQ-DPYQVLGVRRSESXXXXXXXXXXXXXXXHPDKNKDPQASELMIKINNAYSILSDAERKQQYDNYGTVNEEGAPNQHSRDSWTAHDFFREFRGPGGQYSFMFEDS----PFGHGGHD--EKHXXXXXXXXXXXVLPDSYHKPFLIFVLDDICFDCLKYQNLWESTIQNFESIGIGTYEMYYGRNPKLFHQIGANTYPQFIGVVNGRAIKYKGDMNQRGVRDFISTIMPHYLIDNIV-ENAREFSEQSFIDNKPQVMLFSRHMYPPLLFQVVAFEYHHKVKFAYVHTKDRRTTNIQKKFNINPDQPTVIVSKEEPSSPVAVARGNALKRGTLRQLVASNLYMFVPRLSSQQIYDELCPRKYA-SDRILCYILVVDKDTDFNTHLWNFRENAKQEERLQNQR--ARLLYVFGNVQKKF 1448
RK+ S +F+ +L+LI + LSA+ DPY+VLGV R+ S A IKKAYK LA ++HPDKNKDP A + I+I+ AY ILS+ E++ YD YG E + + RE+R +F F++S PF D ++ +L+ +Y N V+PDS+ KP+LI + D CF C+ + +W+ IQ E +G+G ++ G +L H +GA++ P +G++NG+ + + + +R F+ +++P L++ + +N F +NKP V+LF + PLL+++ AF Y + F YV+ R T + +++NIN PT++V KE + P V + +K+ + + N Y+ RL+SQ+++ ELCP K + R C +L+ + T + F A L N + R ++V+ N Q++F
Sbjct: 4 RKLSISWQFLIVLVLILQILSALDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDKFIQISKAYEILSNEEKRSNYDQYGDAGENQGYQKQQQQ--------REYRFRHFHENFYFDESFFHFPFNSERRDSIDEKYLLHFSHYVNEVVPDSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEELGVGIGVVHAGYERRLAHHLGAHSTPSILGIINGKISFFHNAVVRENLRQFVESLLPGNLVEKVTNKNYVRFLSGWQQENKPHVLLFDQTPIVPLLYKLTAFAYKDYLSFGYVYVGLRGTEEMTRRYNINIYAPTLLVFKEHINRPADVIQARGMKKQIIDDFITRNKYLLAARLTSQKLFHELCPVKRSHRQRKYCVVLLTAETTKLSKPFEAFLSFA-----LANTQDTVRFVHVYSNRQQEF 430 The following BLAST results are available for this feature:
BLAST of TCONS_00015469 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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