|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015448 ID=TCONS_00015448|Name=TCONS_00015448|organism=Clytia hemisphaerica|type=transcript|length=1324bp
TTTTCATTTAGCTAGAAGAATGAAAGACAAACTGTCGATTTGGACAGTAA
ATTGTTTCTCTCGATTTTTTCCGAACATCTTGCCTTTTTGTACTAAtact
gaaattttgtgaaacttTACCTGTATTTACGTTGCTGACTCCTTGACTTG
CTTCTTGGACTACTCTACCTGGACTTAACTCTGGTTAGTACGTTGGATTG
GATTTTGACCCCTTGACTTGCTTCTTGGACTACTCTACCTTGACTTAACT
CTGGTTAATATATTGGATTGGATTTATACGTTGCTGACCCGATGACTTGC
TTCTTGGACTACTCTACCTGGACTTAACTCTGGTTAGTACGTTGGATTGG
ATTTTGACCCCTTGACTTGCTTCTTGGACTACTCTACCTTGACTTAACTC
TGGTTAATATATTGGATTGGATTTATACGTTGCTGACCCGATGACTTGCT
TCTTGGACTACTCTACCTGGACTTAACTCTGGTTAGTACGTTGGATTGGA
TTTTGACCCCTTGACTTGCTTCTTGGACTACTCTACCTTGACTTAACTCT
GGTTAATATATTGGATTGGATTTATACGTTGCTGACCCGATGACTTGCTT
CTTGGACTACTCTACCTGGACTTAACTCTGGTTAATACGTTGGATTGGAT
TTTGACCCCTTGACTTGCTTCTTGGACTACTCTACCCGGACTAAACTCTG
TTTAATTCGTTGGATTGGATTTATACGTTGCTGACCCCTTGACTTGCTTC
TTGGACTACTCTACCCGGACAAAACTCTGGTTAATTCGTTGGATTGGATT
TATACGTTGCTGACCCCTTGACTTGGTTCTTGGAGTACTCTACCTGgact
taaacataaaaaatctaAAGCATGAAATGCAGTCATTAATGGACCATGTA
TATTGTAAAACCGACACTCAAACTTTGGAACCTGATGCTGCTGCTTCCAA
TGGCCCGgaaacAAAGTATCCTGCCATGCAAAAAAATGTTCAAGACTAAG
AGCCACATTTCGTGCCTCGAGAGAGAATTTTTATTGTCAGCACTCTTCAT
ATGAAACCTCGCCGGAACTTTATCGTAATTTTAGTTTTTCTCTGGAAGAA
ATAACCCTTTTTACACCTGACGAACATAGACAAACAGAAATGAGGAATCT
CAATGGGACAGATATTAATTTTCCAATTTgtttgaaactttcaaataatA
GTTATGCTGTTAAAGCTCTAGTTTTTACTGGTGCACCACTTGCTTACACC
CACGTTAAAGTCACCTCCTCAAAATCATCCACATGACGAGATGTAGTAAA
GCTGAATTGCATGCTTAATAGTTG Run BLAST on NCBI transcript from alignment at sc0000211:439554..441142+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00015448 ID=TCONS_00015448|Name=TCONS_00015448|organism=Clytia hemisphaerica|type=transcript|length=1589bp|location=Sequence derived from alignment at sc0000211:439554..441142+ (Clytia hemisphaerica)
TTTTCATTTAGCTAGAAGAATGAAAGACAAACTGTCGATTTGGACAGTAA
ATTGTTTCTCTCGATTTTTTCCGAACATCTTGCCTTTTTGTACTAAtact
gaaattttgtgaaacttTACCTGTATTTACGTTGCTGACTCCTTGACTTG
CTTCTTGGACTACTCTACCTGGACTTAACTCTGGTTAGTACGTTGGATTG
GATTTTGACCCCTTGACTTGCTTCTTGGACTACTCTACCTTGACTTAACT
CTGGTTAATATATTGGATTGGATTTATACGTTGCTGACCCGATGACTTGC
TTCTTGGACTACTCTACCTGGACTTAACTCTGGTTAGTACGTTGGATTGG
ATTTTGACCCCTTGACTTGCTTCTTGGACTACTCTACCTTGACTTAACTC
TGGTTAATATATTGGATTGGATTTATACGTTGCTGACCCGATGACTTGCT
TCTTGGACTACTCTACCTGGACTTAACTCTGGTTAGTACGTTGGATTGGA
TTTTGACCCCTTGACTTGCTTCTTGGACTACTCTACCTTGACTTAACTCT
GGTTAATATATTGGATTGGATTTATACGTTGCTGACCCGATGACTTGCTT
CTTGGACTACTCTACCTGGACTTAACTCTGGTTAATACGTTGGATTGGAT
TTTGACCCCTTGACTTGCTTCTTGGACTACTCTACCCGGACTAAACTCTG
TTTAATTCGTTGGATTGGATTTATACGTTGCTGACCCCTTGACTTGCTTC
TTGGACTACTCTACCCGGACAAAACTCTGGTTAATTCGTTGGATTGGATT
TATACGTTGCTGACCCCTTGACTTGGTTCTTGGAGTACTCTACCTGgact
taaacataaaaaatctaAAGCATGAAATGCAGTCATTAATGGACCATGTA
TATTGTAAAACCGACACTCAAACTTTGGAACCTGATGCTGCTGCTTCCAA
TGGCCCGGTAAAATGGACTGAAAGAGGTTATGGTCTGTGCAGTAATTGTA
ACAATAGTTACAAAAATAGTAAGAAACCAAGATTTTGCAGCTGTGGCTTT
GAGCTTGGTGGTAGCTATGCAAATAATTTGGACACTCCATCATCCAAAGC
AAACAATAAGACTTCCACTGCCGTCCCAAAATCAGTTACCATTTATGGAA
CACCAGAGTCTGGAACCTTACGCTCTGTTGCAACAAGCAATAGTCATGac
agggaatttttttttatttcaggaaacAAAGTATCCTGCCATGCAAAAAA
ATGTTCAAGACTAAGAGCCACATTTCGTGCCTCGAGAGAGAATTTTTATT
GTCAGCACTCTTCATATGAAACCTCGCCGGAACTTTATCGTAATTTTAGT
TTTTCTCTGGAAGAAATAACCCTTTTTACACCTGACGAACATAGACAAAC
AGAAATGAGGAATCTCAATGGGACAGATATTAATTTTCCAATTTgtttga
aactttcaaataatAGTTATGCTGTTAAAGCTCTAGTTTTTACTGGTGCA
CCACTTGCTTACACCCACGTTAAAGTCACCTCCTCAAAATCATCCACATG
ACGAGATGTAGTAAAGCTGAATTGCATGCTTAATAGTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00015448-exon-sc0000211-1491911889:439554..440510 | TCONS_00015448-exon-sc0000211-1491911889:439554..440510 | Clytia hemisphaerica | exon |
| TCONS_00015448-exon-sc0000211-1510915933:439554..440510 | TCONS_00015448-exon-sc0000211-1510915933:439554..440510 | Clytia hemisphaerica | exon |
| TCONS_00015448-exon-sc0000211-1575043694:439554..440510 | TCONS_00015448-exon-sc0000211-1575043694:439554..440510 | Clytia hemisphaerica | exon |
| TCONS_00015448-exon-sc0000211-1491911889:440776..441142 | TCONS_00015448-exon-sc0000211-1491911889:440776..441142 | Clytia hemisphaerica | exon |
| TCONS_00015448-exon-sc0000211-1510915933:440776..441142 | TCONS_00015448-exon-sc0000211-1510915933:440776..441142 | Clytia hemisphaerica | exon |
| TCONS_00015448-exon-sc0000211-1575043694:440776..441142 | TCONS_00015448-exon-sc0000211-1575043694:440776..441142 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000211 | supercontig | sc0000211:439554..441142 + |
Blast
The following BLAST results are available for this feature:
|
