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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015445 ID=TCONS_00015445|Name=TCONS_00015445|organism=Clytia hemisphaerica|type=transcript|length=2417bpRun BLAST on NCBI protein sequence of TCONS_00015445-protein >TCONS_00015445-protein ID=TCONS_00015445-protein|Name=TCONS_00015445-protein|organism=Clytia hemisphaerica|type=polypeptide|length=481bp MKLVLLLSICIAAALTADQIYAVPRGAQVRLTHRGMSYSASIGVKKLQQERun BLAST on NCBI transcript from alignment at sc0000211:362427..377561+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00015445 ID=TCONS_00015445|Name=TCONS_00015445|organism=Clytia hemisphaerica|type=transcript|length=15135bp|location=Sequence derived from alignment at sc0000211:362427..377561+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000211:362427..377561+ >TCONS_00015445 ID=TCONS_00015445|Name=TCONS_00015445|organism=Clytia hemisphaerica|type=CDS|length=23136bp|location=Sequence derived from alignment at sc0000211:362427..377561+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00015445 vs. Swiss-Prot (Human)
Match: LBP (Lipopolysaccharide-binding protein OS=Homo sapiens GN=LBP PE=1 SV=3) HSP 1 Score: 150.599 bits (379), Expect = 1.660e-38 Identity = 115/463 (24.84%), Postives = 214/463 (46.22%), Query Frame = 2
Query: 1034 GAQVRLTHRGMSYSASIGVKKLQQELTNKRLPTXXXXXXXXXX-----XXXNLLLRTVRVGGYNVQPVAGNGGLSLSMSGIYVSASARIQVKY--QKGWVKLSDTRNVDIKTSGVGFTLRINIGAQS-GKPQLNVASCSASIGDIDLDFSGNLGFLFNGIAKLFEGKIKDILRKVICDEGRKLVNNEANGFLRGFPVQQNIENYAIINYAF-QSPISTSSYIDFLLRGEFLDPKNPVHSKVTPPTFDTVTSSAKMAYVWITDYTLNTAGDVFHKTGLLKKLVGPLTKEIPKDVKPFLNTKSFEKFIPELFKRFPNRPLEFEIQTNKAPSFSISPGNIGISIXXXXXXXXXXXXGSKLPVFYLDLTVDAKGSVFVKSVNKQLNVGGNIVDFTFGLSVGGSVIGEVNLPIDDPSVKMLVKGLIIENANPLLNKGFPIPKVDDLDFINPQVSFVKNAIRVDTDINY 2395
G R+T +G+ Y+A G+ LQ EL LP +G +L + + + ++PV G G +S R+Q ++ +K + KL + +V +K G+ ++ + +G++S G+P + +SCS+ I D+++D SG+LG+L N E K + +L IC+ +K V+++ +L+ PV I+++A I+Y+ ++P +T+ ++ + +GE + + KM Y I+DY NTA V+H+ G L + IP D L TKSF F+P L + +PN LE + AP + SPGN+ + + + V SK PVF L + + ++ + + G + + + S +G N + + + + N L +GFP+P + + + + K+ + + ++ Y
Sbjct: 29 GLVARITDKGLQYAAQEGLLALQSELLRITLPDFTGDLRIPHVGRGRYEFHSLNIHSCELLHSALRPVPGQGLSLSISD-----SSIRVQGRWKVRKSFFKLQGSFDVSVK--GISISVNLLLGSESSGRPTVTASSCSSDIADVEVDMSGDLGWLLNLFHNQIESKFQKVLESRICEMIQKSVSSDLQPYLQTLPVTTEIDSFADIDYSLVEAPRATAQMLEVMFKGEIFHRNHRSPVTLLAAVMSLPEEHNKMVYFAISDYVFNTASLVYHEEGYLNFSIT--DDMIPPDSNIRLTTKSFRPFVPRLARLYPNMNLELQGSVPSAPLLNFSPGNLSVDPYMEIDAFVLLPSSSKEPVFRLSVATNVSATLTFNTS----KITGFLKPGKVKVELKESKVGLFNAELLEALLNYYILNTFYPKFNDKLAEGFPLPLLKRVQLYDLGLQIHKDFLFLGANVQY 478 The following BLAST results are available for this feature:
BLAST of TCONS_00015445 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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