|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015441 ID=TCONS_00015441|Name=TCONS_00015441|organism=Clytia hemisphaerica|type=transcript|length=2303bpRun BLAST on NCBI protein sequence of TCONS_00015441-protein >TCONS_00015441-protein ID=TCONS_00015441-protein|Name=TCONS_00015441-protein|organism=Clytia hemisphaerica|type=polypeptide|length=503bp MQRSQNDQSPAKIEELYSSTQQKSFESIMRVPYQQKPPVYTNDARSIESPRun BLAST on NCBI transcript from alignment at sc0000211:306097..316332+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00015441 ID=TCONS_00015441|Name=TCONS_00015441|organism=Clytia hemisphaerica|type=transcript|length=10236bp|location=Sequence derived from alignment at sc0000211:306097..316332+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000211:306097..316332+ >TCONS_00015441 ID=TCONS_00015441|Name=TCONS_00015441|organism=Clytia hemisphaerica|type=CDS|length=15120bp|location=Sequence derived from alignment at sc0000211:306097..316332+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00015441 vs. Swiss-Prot (Human)
Match: CEP57 (Centrosomal protein of 57 kDa OS=Homo sapiens GN=CEP57 PE=1 SV=2) HSP 1 Score: 97.4413 bits (241), Expect = 4.284e-21 Identity = 88/266 (33.08%), Postives = 130/266 (48.87%), Query Frame = 2
Query: 185 SPYTSLGSCRSSYASIKPNSYSSLRARSLKANAQH-ESKSKAVMQALQNLQDKIGALEVDRAKAENNLKSLTVETTEYKELLKQKHDLSTTSTVGSPCSSKHGSHTEELGNQLENAQHRCETLEKQLDYMRKMMQTQTTTAGNTKPPLSTPTTPNNRRTFHSPPATNDSAILSRSPRQSTVVARSPTRRIQLSAVQESPALEKLNGLEKEHLKLTASQSQAENKIRQLEEKIREESHCRKLLEDKAYELEQVVAQANLIDHKDPTP 979
SPY Y S KP S LR K + ES S+A+ AL+NLQDKI LE++R +AE ++K+L+ ET EYK++L ++ S ++ H +EL +QL A+++C LEKQL+YMR M++ A + R+ V+ R+ + VQ LEKL+ LE+E+ KLT Q+ AE K+++LE K+ EE RK ++ KA EL+ + LI TP
Sbjct: 34 SPYVV-------YPSDKPFLNSDLRRSPSKPTLAYPESNSRAIFSALKNLQDKIRRLELERIQAEESVKTLSRETIEYKKVLDEQIQERENS------KNEESKHNQELTSQLLAAENKCNLLEKQLEYMRNMIK---------------------------------HAEMERTSVLEKQVSLERERQHDQTHVQ--SQLEKLDLLEQEYNKLTTMQALAEKKMQELEAKLHEEEQERKRMQAKAAELQTGLETNRLIFEDKATP 251 The following BLAST results are available for this feature:
BLAST of TCONS_00015441 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.