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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015370 ID=TCONS_00015370|Name=TCONS_00015370|organism=Clytia hemisphaerica|type=transcript|length=784bp
aaaaaagtgcTGATGTTTTTTTTCGGTAACGTGAAGCTTGGTTGGTTGTT
TCTTATTCACGATATGCGACGTAATATTCAATTAACGTTCGGCGTATTTT
GCGTTATAACGTTAATTTTTGTTTCAACTTGGATACGTAACTCAATACGT
AACGTTCATACGAAAAGGCGTAACACAGAGAATGGGATTCtgacaaaatt
tgagaaaattgttGATCGAATATCGAATATTGATCATAAAATGCAATCTT
TGGACCGAAAATTATCTGAATTGTCATTGAACGACAGACTGATAAACAGG
ACAGACAACGTGGGAACAACAATGCAATCTGATATTGATATACCGCCACC
CAACGTAAAAacaaagcaaccttccttagaACCGCGATCTGTTATTTGTC
CGAAAACTCAAACTGCTGAAAGCCGTTACGTCATTTTAGACGGCGTCAAA
GTAAACTGTTCGTTGCGTTACGTTTTAGTTATTCTCGTTTCAACGCACGT
CAAGAACCGTAAAAGACGTGACACCATACGTCAAATGTGGGCTAATTATA
CGAAATGGCGTGTTCCGGATCATTTACCATGGACCGTAGTTTTTAACGTC
GGTTTTGAAGACCGGAAACCGTCATTAGAAAACATAACTCACGATTTGCA
AGATGAGATGAGAACTCATGGTGATCTGATAGTTGGAAATGTTACGGAGA
GCTTTTACACTTTATCGAGGAAATTGTCGATCAGTATCGATTGGGTTAAT
CGGAATCTCGCATACGATTTCTTCTTAAAAACCG Run BLAST on NCBI protein sequence of TCONS_00015370-protein >TCONS_00015370-protein ID=TCONS_00015370-protein|Name=TCONS_00015370-protein|organism=Clytia hemisphaerica|type=polypeptide|length=261bp
KKVLMFFFGNVKLGWLFLIHDMRRNIQLTFGVFCVITLIFVSTWIRNSIR
NVHTKRRNTENGILTKFEKIVDRISNIDHKMQSLDRKLSELSLNDRLINR
TDNVGTTMQSDIDIPPPNVKTKQPSLEPRSVICPKTQTAESRYVILDGVK
VNCSLRYVLVILVSTHVKNRKRRDTIRQMWANYTKWRVPDHLPWTVVFNV
GFEDRKPSLENITHDLQDEMRTHGDLIVGNVTESFYTLSRKLSISIDWVN
RNLAYDFFLKT Run BLAST on NCBI transcript from alignment at sc0000210:77794..78577 Legend: exonthree_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00015370 ID=TCONS_00015370|Name=TCONS_00015370|organism=Clytia hemisphaerica|type=transcript|length=784bp|location=Sequence derived from alignment at sc0000210:77794..78577 (Clytia hemisphaerica)
CGGTTTTTAAGAAGAAATCGTATGCGAGATTCCGATTAACCCAATCGATA
CTGATCGACAATTTCCTCGATAAAGTGTAAAAGCTCTCCGTAACATTTCC
AACTATCAGATCACCATGAGTTCTCATCTCATCTTGCAAATCGTGAGTTA
TGTTTTCTAATGACGGTTTCCGGTCTTCAAAACCGACGTTAAAAACTACG
GTCCATGGTAAATGATCCGGAACACGCCATTTCGTATAATTAGCCCACAT
TTGACGTATGGTGTCACGTCTTTTACGGTTCTTGACGTGCGTTGAAACGA
GAATAACTAAAACGTAACGCAACGAACAGTTTACTTTGACGCCGTCTAAA
ATGACGTAACGGCTTTCAGCAGTTTGAGTTTTCGGACAAATAACAGATCG
CGGTtctaaggaaggttgctttgtTTTTACGTTGGGTGGCGGTATATCAA
TATCAGATTGCATTGTTGTTCCCACGTTGTCTGTCCTGTTTATCAGTCTG
TCGTTCAATGACAATTCAGATAATTTTCGGTCCAAAGATTGCATTTTATG
ATCAATATTCGATATTCGATCaacaattttctcaaattttgtcaGAATCC
CATTCTCTGTGTTACGCCTTTTCGTATGAACGTTACGTATTGAGTTACGT
ATCCAAGTTGAAACAAAAATTAACGTTATAACGCAAAATACGCCGAACGT
TAATTGAATATTACGTCGCATATCGTGAATAAGAAACAACCAACCAAGCT
TCACGTTACCGAAAAAAAACATCAgcactttttt Coding sequence (CDS) from alignment at sc0000210:77794..78577 >TCONS_00015370 ID=TCONS_00015370|Name=TCONS_00015370|organism=Clytia hemisphaerica|type=CDS|length=783bp|location=Sequence derived from alignment at sc0000210:77794..78577 (Clytia hemisphaerica)
GGTTTTTAAGAAGAAATCGTATGCGAGATTCCGATTAACCCAATCGATAC
TGATCGACAATTTCCTCGATAAAGTGTAAAAGCTCTCCGTAACATTTCCA
ACTATCAGATCACCATGAGTTCTCATCTCATCTTGCAAATCGTGAGTTAT
GTTTTCTAATGACGGTTTCCGGTCTTCAAAACCGACGTTAAAAACTACGG
TCCATGGTAAATGATCCGGAACACGCCATTTCGTATAATTAGCCCACATT
TGACGTATGGTGTCACGTCTTTTACGGTTCTTGACGTGCGTTGAAACGAG
AATAACTAAAACGTAACGCAACGAACAGTTTACTTTGACGCCGTCTAAAA
TGACGTAACGGCTTTCAGCAGTTTGAGTTTTCGGACAAATAACAGATCGC
GGTtctaaggaaggttgctttgtTTTTACGTTGGGTGGCGGTATATCAAT
ATCAGATTGCATTGTTGTTCCCACGTTGTCTGTCCTGTTTATCAGTCTGT
CGTTCAATGACAATTCAGATAATTTTCGGTCCAAAGATTGCATTTTATGA
TCAATATTCGATATTCGATCaacaattttctcaaattttgtcaGAATCCC
ATTCTCTGTGTTACGCCTTTTCGTATGAACGTTACGTATTGAGTTACGTA
TCCAAGTTGAAACAAAAATTAACGTTATAACGCAAAATACGCCGAACGTT
AATTGAATATTACGTCGCATATCGTGAATAAGAAACAACCAACCAAGCTT
CACGTTACCGAAAAAAAACATCAgcactttttt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00015370-exon-sc0000210-1491911889:77794..78577 | TCONS_00015370-exon-sc0000210-1491911889:77794..78577 | Clytia hemisphaerica | exon |
| TCONS_00015370-exon-sc0000210-1510915933:77794..78577 | TCONS_00015370-exon-sc0000210-1510915933:77794..78577 | Clytia hemisphaerica | exon |
| TCONS_00015370-exon-sc0000210-1575043694:77794..78577 | TCONS_00015370-exon-sc0000210-1575043694:77794..78577 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000210 | supercontig | sc0000210:77794..78577 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR002659 | Glyco_trans_31 |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016020 | membrane |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008378 | galactosyltransferase activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006486 | protein glycosylation |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006486 |
protein glycosylation |
| cellular_component |
GO:0016020 |
membrane |
| molecular_function |
GO:0008378 |
galactosyltransferase activity |
Blast
The following BLAST results are available for this feature:
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