TCONS_00015366 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015366
Unique NameTCONS_00015366
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1670

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015366 ID=TCONS_00015366|Name=TCONS_00015366|organism=Clytia hemisphaerica|type=transcript|length=1670bp
AACGGCGCTCCATGAAAGTTAgccattttctctttttttttctcggCTCG
GCCGCCAGGCGAAAGTTGAAAGGTGGGAAAGGCGAACGAACAAGAAGAAA
GTGTATAGAGAAAAAATCCAAATCCAACAAAAAATATAACCATTTAACTT
GATAACAAAACTAGTAATACAATATAGATGGAAGCTGTAGCATTGCACGA
CTTCAATGTCACGTCAAACGAAGATGAATTACCATTTTTAAAGGGATCAA
TATTGAAgGTCCTAAATATGACCGATGATCGCAATTGGTATAAAGCAGAA
CAAAATGGCAAAGAGGGATTTGTACCAAAGAATTATATACAAATGAAGCC
CCATGTGTGGTATTATGGGAAGATCAAAAGAGCGGAGGCTGAACAACTCT
TACTTCAGGAGCCTCATGATGGTGCTTTCCTTCTTCGAGACAGTGAAAGT
ACTGCAGGTGATTTCTCATTATCAGTAAAATTCAACGACCAATGTCAACA
TTTCAAAGTGTTGCGAGACGGTGCAGGAAAATATTTCCTATGGGTGGTCA
AGTTCAATTCGCTAAACCAACTGGTGGAATATCACAGAGCAGCTTCAGTC
AGTCGATCGCAAACTATTTACCTCAAAGACATGGTCAATGCCCACGAGGT
TGGCAGAGCGTTGTTCGATTTTATCGCACAAGAAGACGGAGAACTCGGAT
TCAATCGCGGTGATTTAATCAAAGTAACGGACACAAGTGACCAACATTGG
TGGAGCGGCATTTTTAACGATAGATCGGGCATGTTTCCGGCGAACTATAT
TCAACTTATTGTAACATGTTGAAAAAAGATCCTGGAGAGATAAGATTTTC
CTCTTTTGTTGAGGGATGGAACCGTTAAATGAGAGATAAAAATTATGTTG
GgaacatttccaacaaaatGCGATTGGCGGAATGAGTAAACTCTGCGATT
TTTTGGGCAATAAaattttcacacattttcagATAAAAGGCTTTATTTTA
GTTCTCATGGttcatttttcaattaaaaaaacctttttccttttctcttt
cttcgaacgtttttcattttttctgaatGTTCGAAAAACAAAACCTCGGT
GTTCGTTCATAGTGGGATTATTTTTCTTCCaaatttctacttttttatGT
TAAGAAAAAACAGAACGAGttctttttttgtaaataacaatttaaaaaat
caatttaatacagagaaaattattttttgttttattaagcGTTTTATGTA
CACTTTTAGGTTAGGTTTTTTGTTATGCTCTGTGGTTGAGAGCGATGTGC
TTCTTTTTTCACTCATTCATGTAAACTATTATTTTTATATGCCCTCCCCC
TTTGTGTGTTCTCAACACACGAAACAATTCAGATCTCCTTCTCCTGTGAT
CAATGCTCGTTTATTAGGTATAACCAAACCAAGCTATATAATTTTTTAAA
GGaatatttaaatgttttttcttttttgtattttattcaaatttgatctT
CATTTGAAACTTTGATTGAAAGTTCAACTTGAAATTGATGCATTGTTATT
TCCCCTCCCTTTGTATTGCAATTGAAGGAAAATTCGTCAACACGAGTGAA
CAATCTTTGTAACTTTCTACAGGCCTTCTAAACTCTGTAGACTTTTTGTA
TGAACATTTCAGAAGATAAT
Run BLAST on NCBI

protein sequence of TCONS_00015366-protein

>TCONS_00015366-protein ID=TCONS_00015366-protein|Name=TCONS_00015366-protein|organism=Clytia hemisphaerica|type=polypeptide|length=214bp
MEAVALHDFNVTSNEDELPFLKGSILKVLNMTDDRNWYKAEQNGKEGFVP
KNYIQMKPHVWYYGKIKRAEAEQLLLQEPHDGAFLLRDSESTAGDFSLSV
KFNDQCQHFKVLRDGAGKYFLWVVKFNSLNQLVEYHRAASVSRSQTIYLK
DMVNAHEVGRALFDFIAQEDGELGFNRGDLIKVTDTSDQHWWSGIFNDRS
GMFPANYIQLIVTC
Run BLAST on NCBI

transcript from alignment at sc0000210:404084..414030-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015366 ID=TCONS_00015366|Name=TCONS_00015366|organism=Clytia hemisphaerica|type=transcript|length=9947bp|location=Sequence derived from alignment at sc0000210:404084..414030- (Clytia hemisphaerica)
AACGGCGCTCCATGAAAGTTAGCCATTTTCTCTTTTTTTTTCTCGGCTCG
GCCGCCAGGCGAAAGTTGAAAGGTGGGAAAGGCGAACGAACAAGAAGAAA
GTGTATAGAGAAAAAATCCAAATCCAACAAAAAATATAACCATTTAACTT
GATAACAAAACTAGTAATACAATATAGATGGAAGCTGTAGCATTGCACGA
CTTCAATGTCACGTCAAACGAAGATGAATTACCATTTTTAAAGGGATCAA
TATTGAAGGTATATTTTATTTCTTAGTTTTTCATTTTGGTCATCCCTGAC
TCATGGTTTCACTAATTTCACTAGGTGCTCAAAGAAAATCCATATCAGTT
TCCAGTGTAATGAACCAGGAAAGGTTTAATCTCAGGATTTTTAGGGGTTC
ATAATAAACAGGCTACAGTAGCTCTAAAGCTCTCAATCGAACGGAATCAA
CGATTGTACCTGTCGAACCAAATCGAACGCAATTGACCGATTGAAATTCG
ATTGTCGAACGCAATCGAATCTCAATCGAATATTACTGCAATTTTCAGAT
TCGATTGATATTCGATTGCGTTCGATTGATGTCCAATTGCGTTGGCCAAT
TAAGAAAACCATTTTCGTTTTCTTCGACCAATCTGAATGCCCGATACGAG
TTACTTGAGGAAACCCAGGGAGAAGGCAGGCACACAAAATGGCAGGGAAA
ATGGCTGGGAAGTAAGGGGGCAATCTTTATGGCAGGGCTTCTTTTTGTGC
TTCGGTTTTAGGTCAGTTTTTTTGGTTTTTCTTAAAGGAGGCTTGGAATT
CCCATATTAGAAAAACCGAGTTAGAAAGCCGAGTTAGCAAAAAACCGAGT
TATGGCGTCATCAAACGAAAATTTTTACATCACAATGAAATATCTAACTC
GATTTCTGATTTTCTAACTCAATTTTTTTTGTCAAATTAAAATTTTCAAG
TTAGTTAGCTAACTAAAGTCTGTCCAAATATAATTGGCAGTGGAAACAAG
AATGCCTGTAACTTTTGATAGTCAAATATAATTATGGAAATTTTTTTTGC
TTGTTTTAGAGAATCAAAAGCGCTATATTTGAATGTAATTTTGGTTGAAA
AATTCGCGATTTTTAGCGGTTGAATTTGCGATTGCAAAAATTGAGCTTTC
TTTCTACTTATGCTATAACTTTCATTTTTACACCAGTGGTAGTTCAACCT
TAGGTTAAGAAGTTTGTTAAATTTCAAAGCAAACAGAAAAGTCCTTCGGA
AGATATGGGACCCGAAATACCCCTTGGTAGCACTTTTCTGTGAAATATCA
AATCTCCAAATTATTACTAAAAACGGGGGTTCTGTTATCTTTTTTGAACA
GTGCAATTAAAAGTTGGAAACTGTTAAGTGTTGGTGCATTGGTATTATTG
GTATCATTGATTATTTCAAAACGAAGTGAAATCNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNACCCCCGTTTTTAGTAATAAGTTGGAGATTTAATATTTCACAGAAAA
GTGCTACCAAGGGGTATTTCGGGTCCCATATCTTCCGAAAGACTTTTCTG
TTTGCTTTGAAATTTAACTAACTTCTTAACCTAAGGTTGAACTACCACTG
GTGTAAAAATGAAAGTTATAGCATAAGTAGAAAGAAAGCTCAATTTTTGC
AATCGCAAATTTAACCGCTAAAAATCGCGAATTTTTCAACCAAAAATACA
TTCAAATATAGCGCTTTTGATTCTCTAAAACAAGNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNATTCTCTAAAACAAGCAAAAACAATTTCCATAATTATATTTGACTATC
AAAAGTTACAGGCATTCTTGTTTCCACTGCCAATTATATTTGGACAGACT
TTAGGTTTTTTTGTCAAATTAAAATTTTCGAGTTAGCTATCTTATACAAA
AATGTATTGTGTATCTTTGAAAAAAAAAAAAGCACATTGTTTTTATGTTG
TGGTTTATTTTGCATATAGCTGCACTTATTTACTGTAATGTCCGATCAGG
GTTGCTTTAGCTTGCTCAAAGTATACTTCTCTTTAGCATTGTCCATATAG
TACGTATGCAAAGATTTTACAAATGTTTGACACCCCCTCCCCCCTTGTAC
GCAGAGAACAATAGAAATGACTTTGTTTAAACAATAGATGTACGCTTTTG
CTGAACCCCCTCTCCCCCCTTCACTGTGTACGTACATATATGGATGGCCC
CTCCAGTCTGGGTAAAAAAATTTTGTAGTTTAGTAACCGTCAAGTTACGC
AACATGCACACAACCATCTTGAAGACTTTGCTGGTCGCAAATGATAATCG
AAAGCAAAACTTAAAATTCATAACTATGCGGGGAAGCTCATTTTCCCCCC
GTTTTGCTTTAAACTCGCTTTTGATTGGTCTATGAATTTGAGCGATTGAT
TTACCGCCTTGGCGGAATAAACACACAACCATAATAAATAAATTCAACAG
GGCAGCGGTGTAGCAATTAAGTTCAACTGGGAGTCCTCTCTTCTGTGCCA
AGCACTGGCAGTGTTTTTTAAACTTTAAAACAATGTTAAATGAAGACCAG
ATTGATCTGTTTGTTATGGCTGTACAAGTTGTGACGAGAGTGTGCATGTT
GTGTAACTTGATGGCAGCCCGCTTTCGGCAAGTCTGATAAGAGATATCTA
TAAACTGTTATCGCCATTCATTCCATTCCATCATTCAGTAAAAATGTGCG
CCAAGGTTAGAAAAGGTTAGAAAAACACAATCTGCNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNA
ATTTCAACAAGAACTGTATATATTAATATTAATATAAATGATCAAATTCC
AAAGACCATTTGTCATAATTTTGCAAGTCCAATAATAGGAGATGTGATGC
CATCATTTGTTTCCCGTCATCTGATTTACGGTCAGCAGGTAGAGCTGGAG
AGTCAGAAAGCTTTTCCGCTGCTTTGCTGGATTTCCACTGTCGACCTCTG
CACGCTCTGTGTTTAAAAGTTTTCAAAATCGAAGTAGAGAGCCGCATGCT
AATGGAGAGTAAACTGAAAACACCAGTTTATCCACGGTTTCTCAATTTTA
AAATTCGGATCAGTCCACACGAATTCACTTTCAACAAGATGTATAGCTGC
TTCTTAACAGAAAAATATTTTCGAACGACTCCCACTTTTTAAAGTAGAAA
TGACGGGAACCAAACAGTTTTTTGCAATTCGCCTTTATCACAAACATGTC
CAAGTCCAAAAAAGCACGATTGCATCCAGTCTTTATATCAAATTTATACA
GTAGCTGTACTTTTGTAAACTTTATCAAATCCCAATAACATTATAACNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTGTTATTAT
CTTTATTATTTTTGTGTTTTTTTTATATATTCTTTCGTTTTATGGGTTGA
CTAATCCATGATATTAGGATTGTTGAAGTTTTTGAGGAAAAATTTTTAGC
ATAAAATAATCATAAAATTTGAAGAAAGAGCATACAATTTGGCATAAAAC
CTGACTAATTTTGGCATAAAAAATCATACAATTTGGTCGTTTTTTGGCAT
AAAATCATACTATAATAGGGATTTTTAGAGTGTGACCCCTGTACATTATG
ATCTGTAAAAACAACGCACGCTAAAAGTACCCAAAAAGTTAACCCGATCG
GAAGAAAGTTTAGAAATCGTCTTATGGAAAATTTTACCTATTTGAATGCT
CAGCTTAGGCTGACCAATTAGTACAGATTAGTACCATCTGGGTAAGGCTG
CGATCACAAATAACTTGTGTTCGCGTTGTTTGTAGGTCACATCAAGTCGG
TCAGTCGGTCAGCATTGATTTGATAGTGTCCAGATGGTCAGTCTCCCCGC
AGTCCTTGCAATACGATAACTTAAGTTTTAGGTCTTGTGTATGAGCAGGC
TGGCGTCTTATATATTTTCAATAGTTTATTGAATGAAGCTCTTTTGTTTT
GCCTGAATAGATCTGAATAGGGTATCAATAATCAAAGTATGGGCCTCTTT
ACCTGTTTATTTATCCAATAGACTCCCTAAAGAAGGATGTTGAAATTAGA
CCAACTTACGAGCATGTACTAAATATTTTCTAATCATTGTTTTGATGCTG
GAGTTATGGAGTTTTTAATTACCTTAAAGGAAGAAATTTCTTTCCGCCAA
ATTTAATTTTGTCAGTGGTGGTCAATGGTGAATGGGCTTATTCACCAAAA
TTTCTTCTCTTAAGGTACATCCAACAGGTCTATTATTTATTCAATGGAGT
GAGTTGCCTTCATAAAGAAAGGGTAACATGGCCTGAAATAATGAAGGGAC
ATCAGATATTGGCTAACCCAATTACTGGAATGTCTGACCCAAATGTAAAT
AGGTTATAGTTGGACATTATGTCTTATGGAATTTCTTTTGGTGCCTTTAA
ACAAATTCAAGCTGATCAAAATTCACAAACTGTTTTCACCACAACTTCTT
GGAGTCAAAACGGTGTCCTGATTGAAAAAAGGTTGATACTATTCATTTGA
TCTTTTAAAGATATCCAGAAACCAAAACAAAAAAATCTTGTCTCATTTAA
TATGCATGACACTACATACTGATTTTGAATTTTAATCCAGATTCATTCTA
TACATACAATCAAAAATTTCCCTCCTTACATTCGTGTATCATGTTATCTT
ATTCCCCTCACGTGGCATGGGTTGACTCAGGCTAGAATCTTCACTTACAA
CAGCACCAAAGCTGATAAACCAGATAACCTGTTGTTCAACAAATAGGCTT
CCTCACAAAACATATGCAAAAAAACAAAACAAACGCAACTAAGCTAGGAA
TTTCCCTAGCTTATCATATCTTTTTCAAGTGAAATGAAGCGTTAAGAAGA
CTTTAAAGTAAATGTACACTCGTGTTTGAGCTTCACAACAGGCAATCACC
ATAGTGTTTATCCCCCCTATTATAACTATTCTCAATCTCAAGGTCTGGCG
TCCTTGCCCTGCATAGCCTGAGGTTTCTTTACTTCTGGATTTCGTGGCAC
TCTATGCATCATTTCAAAAAAAAGCTCTGTTTCTAAAAAGTGGGTCAGGT
GCCGCACTAACCTTTTGTTAACTATTTCAAAGATATAACATATTATCTAG
TACAGTATACTTTGCTATCATACTTCTTTGAAAAAACAAGCTATTTAATG
TTACCTTAATTATTTTTCAATTTTTCTACCTGAAGTGCTGGGACTTAGGA
TCATTGATTTTAGGTGGGAGTTATAAGTAGTGGTGGGACCTCATTTTTTG
GTGGGACGCGGAACCTCCATCCACATTATGCTCACTGCACATGAAAGTAA
TAAGTATGAATTGCTTCTATAAATAATAATGCTCTATAAAATGTCTCCTT
TGTATTCTAACGCAGGTCCTAAATATGACCGATGATCGCAATTGGTATAA
AGCAGAACAAAATGGCAAAGAGGGATTTGTACCAAAGAATTATATACAAA
TGAAGCCCCATGTGTAAGAAGCCAATATTATTGAACTCTTTTAGAAACAC
CCAATGTGTTGTTCTTACACTATCCAAGCTATTCAGTTCCTTCAAAGATA
TCGACAAATATGTAGTAATAATAATGTTTGAATTATAATCTTTAGGTGGT
ATTATGGGAAGATCAAAAGAGCGGAGGCTGAACAACTCTTACTTCAGGAG
CCTCATGATGGTGCTTTCCTTCTTCGAGACAGTGAAAGTACTGCAGGTAA
CAACCCACAGATATCTTATAAAACACTAGATAGAGCTAGTCCCTAGCTGA
AGCAAAATAATCCACCATCTTTGATGAGTAGACCATATTTCGGTGCCGGC
AATTTGATTGACCAGGTTCATTTTCTCGCCTCCTCACTTCACGCCACTCA
GGGTTTTTTGTTTGGTTGAACAAATTGCCGGTATCGAATTGTGATCTACT
TTCAGGAAAGATTTTTCGCTCTTTAAAAATTTTTATCCATAGCCCTAACC
TGCTTTTGCAGCTCATGAAGTTGACGGACGATATTGATGATATTTTAGAA
GAGTTTTGAATGAGTTTTGTGTATCATTTTTCTCTCTTTATCGTTTTAGG
TGATTTCTCATTATCAGTAAAGTAAGTCCTCTTTATATATATTTTTAAAT
TAAAACTCATTTTTGGATTTTTAAAATTATTTCAGAAACAGCAATTTCTC
AAACCTTCCTTTTGTGTAAGAGATAATGTGATAAAGGAGATTTGAGATTC
ATTTCGTTTTCGGTATTTTCAGATTCAACGACCAATGTCAACATTTCAAA
GTGTTGCGAGACGGTGCAGGAAAATATTTCCTATGGGTGGTCAAGTTCAA
TTCGCTAAACCAACTGGTGGAATATCACAGAGCAGCTTCAGTCAGTCGAT
CGCAAACTATTTACCTCAAAGACATGGTCAATGCCCACGAGGTTTGTTTG
AAGGCCTGCTCGTTTTATTTCCTCATAAAATAACTACTTGGTTTTGGATA
AGTCAGATTTTTATTTTGATATTTCTTGCTATTTTAGAGCCCTTCTCATC
CCTTTTCAGGTGATAAGTGCACAGTCACGTTTCTTTATAAGAACAAACTA
AATAAGAACATAAAATGGCTTCGATAGCCAAAATATCAAGAACAAGTTGA
GAGCATTTTAAGTCGATATGGACATATACTAGACTCATTTTCTTAGGAAA
TTGAGCAAAATACTCACAAAATGGCGAAACTAAGACTATTTGGGGAAGGC
TTAAAAAAACTCAAAAAATTGAAAACGTCTAAAAGCTTCAAAATCTTTTT
CTGATGTTCATATGAAAAATACGTGCATATGTAACAGTGAGCATTCTCTT
AGAAGTGCATTTCCTAATTTTTCAGGTTGGCAGAGCGTTGTTCGATTTTA
TCGCACAAGAAGACGGAGAACTCGGATTCAATCGCGGTGATTTAATCAAA
GTAACGGACACAAGTGACCAACATTGGTGGAGCGGCATTTTTAACGATAG
ATCGGGCATGTTTCCGGCGAACTATATTCAACTTATTGTAACATGTTGAA
AAAAGATCCTGGAGAGATAAGATTTTCCTCTTTTGTTGAGGGATGGAACC
GTTAAATGAGAGATAAAAATTATGTTGGGAACATTTCCAACAAAATGCGA
TTGGCGGAATGAGTAAACTCTGCGATTTTTTGGGCAATAAAATTTTCACA
CATTTTCAGATAAAAGGCTTTATTTTAGTTCTCATGGTTCATTTTTCAAT
TAAAAAAACCTTTTTCCTTTTCTCTTTCTTCGAACGTTTTTCATTTTTTC
TGAATGTTCGAAAAACAAAACCTCGGTGTTCGTTCATAGTGGGATTATTT
TTCTTCCAAATTTCTACTTTTTTATGTTAAGAAAAAACAGAACGAGTTCT
TTTTTTGTAAATAACAATTTAAAAAATCAATTTAATACAGAGAAAATTAT
TTTTTGTTTTATTAAGCGTTTTATGTACACTTTTAGGTTAGGTTTTTTGT
TATGCTCTGTGGTTGAGAGCGATGTGCTTCTTTTTTCACTCATTCATGTA
AACTATTATTTTTATATGCCCTCCCCCTTTGTGTGTTCTCAACACACGAA
ACAATTCAGATCTCCTTCTCCTGTGATCAATGCTCGTTTATTAGGTATAA
CCAAACCAAGCTATATAATTTTTTAAAGGAATATTTAAATGTTTTTTCTT
TTTTGTATTTTATTCAAATTTGATCTTCATTTGAAACTTTGATTGAAAGT
TCAACTTGAAATTGATGCATTGTTATTTCCCCTCCCTTTGTATTGCAATT
GAAGGAAAATTCGTCAACACGAGTGAACAATCTTTGTAACTTTCTACAGG
CCTTCTAAACTCTGTAGACTTTTTGTATGAACATTTCAGAAGATAAT

Coding sequence (CDS) from alignment at sc0000210:404084..414030-

>TCONS_00015366 ID=TCONS_00015366|Name=TCONS_00015366|organism=Clytia hemisphaerica|type=CDS|length=3870bp|location=Sequence derived from alignment at sc0000210:404084..414030- (Clytia hemisphaerica)
GTTGGCAGAGCGTTGTTCGATTTTATCGCACAAGAAGACGGAGAACTCGG
ATTCAATCGCGGTGATTTAATCAAAGTAACGGACACAAGTGACCAACATT
GGTGGAGCGGCATTTTTAACGATAGATCGGGCATGTTTCCGGCGAACTAT
ATTCAACTTATTGTAACATGTTGAATTCAACGACCAATGTCAACATTTCA
AAGTGTTGCGAGACGGTGCAGGAAAATATTTCCTATGGGTGGTCAAGTTC
AATTCGCTAAACCAACTGGTGGAATATCACAGAGCAGCTTCAGTCAGTCG
ATCGCAAACTATTTACCTCAAAGACATGGTCAATGCCCACGAGGTGATTT
CTCATTATCAGTAAAGTGGTATTATGGGAAGATCAAAAGAGCGGAGGCTG
AACAACTCTTACTTCAGGAGCCTCATGATGGTGCTTTCCTTCTTCGAGAC
AGTGAAAGTACTGCAGGTCCTAAATATGACCGATGATCGCAATTGGTATA
AAGCAGAACAAAATGGCAAAGAGGGATTTGTACCAAAGAATTATATACAA
ATGAAGCCCCATGTATGGAAGCTGTAGCATTGCACGACTTCAATGTCACG
TCAAACGAAGATGAATTACCATTTTTAAAGGGATCAATATTGAAGGTTGG
CAGAGCGTTGTTCGATTTTATCGCACAAGAAGACGGAGAACTCGGATTCA
ATCGCGGTGATTTAATCAAAGTAACGGACACAAGTGACCAACATTGGTGG
AGCGGCATTTTTAACGATAGATCGGGCATGTTTCCGGCGAACTATATTCA
ACTTATTGTAACATGTTGAATTCAACGACCAATGTCAACATTTCAAAGTG
TTGCGAGACGGTGCAGGAAAATATTTCCTATGGGTGGTCAAGTTCAATTC
GCTAAACCAACTGGTGGAATATCACAGAGCAGCTTCAGTCAGTCGATCGC
AAACTATTTACCTCAAAGACATGGTCAATGCCCACGAGGTGATTTCTCAT
TATCAGTAAAGTGGTATTATGGGAAGATCAAAAGAGCGGAGGCTGAACAA
CTCTTACTTCAGGAGCCTCATGATGGTGCTTTCCTTCTTCGAGACAGTGA
AAGTACTGCAGGTCCTAAATATGACCGATGATCGCAATTGGTATAAAGCA
GAACAAAATGGCAAAGAGGGATTTGTACCAAAGAATTATATACAAATGAA
GCCCCATGTATGGAAGCTGTAGCATTGCACGACTTCAATGTCACGTCAAA
CGAAGATGAATTACCATTTTTAAAGGGATCAATATTGAAGGTTGGCAGAG
CGTTGTTCGATTTTATCGCACAAGAAGACGGAGAACTCGGATTCAATCGC
GGTGATTTAATCAAAGTAACGGACACAAGTGACCAACATTGGTGGAGCGG
CATTTTTAACGATAGATCGGGCATGTTTCCGGCGAACTATATTCAACTTA
TTGTAACATGTTGAATTCAACGACCAATGTCAACATTTCAAAGTGTTGCG
AGACGGTGCAGGAAAATATTTCCTATGGGTGGTCAAGTTCAATTCGCTAA
ACCAACTGGTGGAATATCACAGAGCAGCTTCAGTCAGTCGATCGCAAACT
ATTTACCTCAAAGACATGGTCAATGCCCACGAGGTGATTTCTCATTATCA
GTAAAGTGGTATTATGGGAAGATCAAAAGAGCGGAGGCTGAACAACTCTT
ACTTCAGGAGCCTCATGATGGTGCTTTCCTTCTTCGAGACAGTGAAAGTA
CTGCAGGTCCTAAATATGACCGATGATCGCAATTGGTATAAAGCAGAACA
AAATGGCAAAGAGGGATTTGTACCAAAGAATTATATACAAATGAAGCCCC
ATGTATGGAAGCTGTAGCATTGCACGACTTCAATGTCACGTCAAACGAAG
ATGAATTACCATTTTTAAAGGGATCAATATTGAAGGTTGGCAGAGCGTTG
TTCGATTTTATCGCACAAGAAGACGGAGAACTCGGATTCAATCGCGGTGA
TTTAATCAAAGTAACGGACACAAGTGACCAACATTGGTGGAGCGGCATTT
TTAACGATAGATCGGGCATGTTTCCGGCGAACTATATTCAACTTATTGTA
ACATGTTGAATTCAACGACCAATGTCAACATTTCAAAGTGTTGCGAGACG
GTGCAGGAAAATATTTCCTATGGGTGGTCAAGTTCAATTCGCTAAACCAA
CTGGTGGAATATCACAGAGCAGCTTCAGTCAGTCGATCGCAAACTATTTA
CCTCAAAGACATGGTCAATGCCCACGAGGTGATTTCTCATTATCAGTAAA
GTGGTATTATGGGAAGATCAAAAGAGCGGAGGCTGAACAACTCTTACTTC
AGGAGCCTCATGATGGTGCTTTCCTTCTTCGAGACAGTGAAAGTACTGCA
GGTCCTAAATATGACCGATGATCGCAATTGGTATAAAGCAGAACAAAATG
GCAAAGAGGGATTTGTACCAAAGAATTATATACAAATGAAGCCCCATGTA
TGGAAGCTGTAGCATTGCACGACTTCAATGTCACGTCAAACGAAGATGAA
TTACCATTTTTAAAGGGATCAATATTGAAGGTTGGCAGAGCGTTGTTCGA
TTTTATCGCACAAGAAGACGGAGAACTCGGATTCAATCGCGGTGATTTAA
TCAAAGTAACGGACACAAGTGACCAACATTGGTGGAGCGGCATTTTTAAC
GATAGATCGGGCATGTTTCCGGCGAACTATATTCAACTTATTGTAACATG
TTGAATTCAACGACCAATGTCAACATTTCAAAGTGTTGCGAGACGGTGCA
GGAAAATATTTCCTATGGGTGGTCAAGTTCAATTCGCTAAACCAACTGGT
GGAATATCACAGAGCAGCTTCAGTCAGTCGATCGCAAACTATTTACCTCA
AAGACATGGTCAATGCCCACGAGGTGATTTCTCATTATCAGTAAAGTGGT
ATTATGGGAAGATCAAAAGAGCGGAGGCTGAACAACTCTTACTTCAGGAG
CCTCATGATGGTGCTTTCCTTCTTCGAGACAGTGAAAGTACTGCAGGTCC
TAAATATGACCGATGATCGCAATTGGTATAAAGCAGAACAAAATGGCAAA
GAGGGATTTGTACCAAAGAATTATATACAAATGAAGCCCCATGTATGGAA
GCTGTAGCATTGCACGACTTCAATGTCACGTCAAACGAAGATGAATTACC
ATTTTTAAAGGGATCAATATTGAAGGTTGGCAGAGCGTTGTTCGATTTTA
TCGCACAAGAAGACGGAGAACTCGGATTCAATCGCGGTGATTTAATCAAA
GTAACGGACACAAGTGACCAACATTGGTGGAGCGGCATTTTTAACGATAG
ATCGGGCATGTTTCCGGCGAACTATATTCAACTTATTGTAACATGTTGAA
TTCAACGACCAATGTCAACATTTCAAAGTGTTGCGAGACGGTGCAGGAAA
ATATTTCCTATGGGTGGTCAAGTTCAATTCGCTAAACCAACTGGTGGAAT
ATCACAGAGCAGCTTCAGTCAGTCGATCGCAAACTATTTACCTCAAAGAC
ATGGTCAATGCCCACGAGGTGATTTCTCATTATCAGTAAAGTGGTATTAT
GGGAAGATCAAAAGAGCGGAGGCTGAACAACTCTTACTTCAGGAGCCTCA
TGATGGTGCTTTCCTTCTTCGAGACAGTGAAAGTACTGCAGGTCCTAAAT
ATGACCGATGATCGCAATTGGTATAAAGCAGAACAAAATGGCAAAGAGGG
ATTTGTACCAAAGAATTATATACAAATGAAGCCCCATGTATGGAAGCTGT
AGCATTGCACGACTTCAATGTCACGTCAAACGAAGATGAATTACCATTTT
TAAAGGGATCAATATTGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008589XLOC_008589Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015366-proteinTCONS_00015366-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015366-exon-sc0000210-1575043694:413773..414030TCONS_00015366-exon-sc0000210-1575043694:413773..414030Clytia hemisphaericaexon
TCONS_00015366-exon-sc0000210-1575043694:406468..406565TCONS_00015366-exon-sc0000210-1575043694:406468..406565Clytia hemisphaericaexon
TCONS_00015366-exon-sc0000210-1575043694:406235..406335TCONS_00015366-exon-sc0000210-1575043694:406235..406335Clytia hemisphaericaexon
TCONS_00015366-exon-sc0000210-1575043694:405860..405881TCONS_00015366-exon-sc0000210-1575043694:405860..405881Clytia hemisphaericaexon
TCONS_00015366-exon-sc0000210-1575043694:405540..405708TCONS_00015366-exon-sc0000210-1575043694:405540..405708Clytia hemisphaericaexon
TCONS_00015366-exon-sc0000210-1575043694:404084..405105TCONS_00015366-exon-sc0000210-1575043694:404084..405105Clytia hemisphaericaexon
TCONS_00015366-exon-sc0000210-1510915933:413773..414030TCONS_00015366-exon-sc0000210-1510915933:413773..414030Clytia hemisphaericaexon
TCONS_00015366-exon-sc0000210-1510915933:406468..406565TCONS_00015366-exon-sc0000210-1510915933:406468..406565Clytia hemisphaericaexon
TCONS_00015366-exon-sc0000210-1510915933:406235..406335TCONS_00015366-exon-sc0000210-1510915933:406235..406335Clytia hemisphaericaexon
TCONS_00015366-exon-sc0000210-1510915933:405860..405881TCONS_00015366-exon-sc0000210-1510915933:405860..405881Clytia hemisphaericaexon
TCONS_00015366-exon-sc0000210-1510915933:405540..405708TCONS_00015366-exon-sc0000210-1510915933:405540..405708Clytia hemisphaericaexon
TCONS_00015366-exon-sc0000210-1510915933:404084..405105TCONS_00015366-exon-sc0000210-1510915933:404084..405105Clytia hemisphaericaexon
TCONS_00015366-exon-sc0000210-1491911889:413773..414030TCONS_00015366-exon-sc0000210-1491911889:413773..414030Clytia hemisphaericaexon
TCONS_00015366-exon-sc0000210-1491911889:406468..406565TCONS_00015366-exon-sc0000210-1491911889:406468..406565Clytia hemisphaericaexon
TCONS_00015366-exon-sc0000210-1491911889:406235..406335TCONS_00015366-exon-sc0000210-1491911889:406235..406335Clytia hemisphaericaexon
TCONS_00015366-exon-sc0000210-1491911889:405860..405881TCONS_00015366-exon-sc0000210-1491911889:405860..405881Clytia hemisphaericaexon
TCONS_00015366-exon-sc0000210-1491911889:405540..405708TCONS_00015366-exon-sc0000210-1491911889:405540..405708Clytia hemisphaericaexon
TCONS_00015366-exon-sc0000210-1491911889:404084..405105TCONS_00015366-exon-sc0000210-1491911889:404084..405105Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000210supercontigsc0000210:404084..414030 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
50.9947	52.8063	42.4518	43.6844	94.8688	75.3288	84.6059	90.2843	69.5946	70.2104	52.0581	44.4258	52.4067	47.1123	42.7866	42.8239	65.1151	68.8148	45.2254	58.6431	63.0864	63.6613	56.799	54.8786	62.7026	66.9201	86.9054	72.1016	77.5691	73.8956
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001452SH3_domain
IPR000980SH2
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
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BLAST of TCONS_00015366 vs. Swiss-Prot (Human)
Match: GRB2 (Growth factor receptor-bound protein 2 OS=Homo sapiens GN=GRB2 PE=1 SV=1)

HSP 1 Score: 280.796 bits (717), Expect = 1.764e-90
Identity = 134/214 (62.62%), Postives = 168/214 (78.50%), Query Frame = 1 
Query:  178 MEAVALHDFNVTSNEDELPFLKGSILKVLNMTDDRNWYKAEQNGKEGFVPKNYIQMKPHVWYYGKIKRAEAEQLLLQEPHDGAFLLRDSESTAGDFSLSVKFNDQCQHFKVLRDGAGKYFLWVVKFNSLNQLVEYHRAASVSRSQTIYLKDMVNAHEVG---RALFDFIAQEDGELGFNRGDLIKVTDTSDQHWWSGIFNDRSGMFPANYIQLI 810
            MEA+A +DF  T+ +DEL F +G ILKVLN   D+NWYKAE NGK+GF+PKNYI+MKPH W++GKI RA+AE++L ++ HDGAFL+R+SES  GDFSLSVKF +  QHFKVLRDGAGKYFLWVVKFNSLN+LV+YHR+ SVSR+Q I+L+D+    +     +ALFDF  QEDGELGF RGD I V D SD +WW G  + ++GMFP NY+  +
Sbjct:    1 MEAIAKYDFKATA-DDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEMKPHPWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFLWVVKFNSLNELVDYHRSTSVSRNQQIFLRDIEQVPQQPTYVQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVTPV 213
The following BLAST results are available for this feature:
BLAST of TCONS_00015366 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GRB21.764e-9062.62Growth factor receptor-bound protein 2 OS=Homo sap... [more]
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