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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015362 ID=TCONS_00015362|Name=TCONS_00015362|organism=Clytia hemisphaerica|type=transcript|length=1917bpRun BLAST on NCBI protein sequence of TCONS_00015362-protein >TCONS_00015362-protein ID=TCONS_00015362-protein|Name=TCONS_00015362-protein|organism=Clytia hemisphaerica|type=polypeptide|length=439bp MTPTIHDHPHVVDFVNDGIRRREDSELVDGDERIRKTSRKRRSSGSQIKLRun BLAST on NCBI transcript from alignment at sc0000210:284496..311075- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00015362 ID=TCONS_00015362|Name=TCONS_00015362|organism=Clytia hemisphaerica|type=transcript|length=26580bp|location=Sequence derived from alignment at sc0000210:284496..311075- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000210:284496..311075- >TCONS_00015362 ID=TCONS_00015362|Name=TCONS_00015362|organism=Clytia hemisphaerica|type=CDS|length=9240bp|location=Sequence derived from alignment at sc0000210:284496..311075- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00015362 vs. Swiss-Prot (Human)
Match: TLL1 (Tolloid-like protein 1 OS=Homo sapiens GN=TLL1 PE=1 SV=1) HSP 1 Score: 112.464 bits (280), Expect = 1.404e-25 Identity = 68/194 (35.05%), Postives = 104/194 (53.61%), Query Frame = 3
Query: 390 KLWASTTIPYVVGSGATLDGYDMEIENALAKFSEHTCLKFVRRTTEKDYIKFIPNQ-GCWSYVGYSPDKSGVQEIAIDEWSCLFEDLIQHEAMHALGFWHEHQRPDRDQYVVIHKNNIREGKEHNFDIVYDWIEAAKSEKYDVKSVMQYERSYFTNNFDLFTM---EMKGGDKSELGGY-ELTKSDIKEINRMY 956
++W IPYV+G T M + A+ + +HTC+ F+ R+ E+ YI F GC SYVG +G Q I+I + +C ++ HE H +GFWHEH RPDRD +V I + NI+ G+E+NF + + E+YD S+M Y R+ F+ L T+ G + +G L+K DI + ++Y
Sbjct: 155 RIWPGGVIPYVIGGNFTGSQRAM-FKQAMRHWEKHTCVTFIERSDEESYIVFTYRPCGCCSYVGRR--GNGPQAISIGK-NCDKFGIVVHELGHVIGFWHEHTRPDRDNHVTIIRENIQPGQEYNFLKMEPGEVNSLGERYDFDSIMHYARNTFSRGMFLDTILPSRDDNGIRPAIGQRTRLSKGDIAQARKLY 344 The following BLAST results are available for this feature:
BLAST of TCONS_00015362 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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