TCONS_00015355 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015355
Unique NameTCONS_00015355
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length878

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015355 ID=TCONS_00015355|Name=TCONS_00015355|organism=Clytia hemisphaerica|type=transcript|length=878bp
ATAAAACAGCAAAAATACAGCAGTCAGCACTAGGcaaatgaagaactgaa
aaaggtcCATGTGGAAGAACTGAGGCCTTAAATACGCATGAGAGTGAGGC
TGTCCCAAGAGTCCGgatatatatcaaaacaaaccatttgcatctaaact
ctgatatacaAAACATATATCAGAACCGAAAATCTTGAAAGACTTTTAAG
CTTTACTGCCAAAAATGAGTTCCTTAGTTGGCAAATGTATTATGCAGCAG
TGTTTATCAGCCAAACTGATGGTCAAGCCAGCTGAAGGTGATGACAGCCC
TGCTCAATATGTCCAAATCAACCAAGGTGTTGTTGTGTTCATTTGTTTTC
TAAAAGATGCAGCAATCGATCATTTACCCAAAATTGTGAAATCCATACTT
GAAGTTCGGCTGTCCTTTTCTGAGGAAAATCAAAAACGAGTTTCTATACT
GGACTTGCCTGGTGACGTCCTGATCGTCCCTCAaGCCACTCTCGGTGGAA
GAATGAAAGGCAAAGCCATTCAATATCATAATAATGTTTCTAAGGAGCTT
GGTCAACAGTTGTATTCTGATTTCGTTGCACAGATCAAGgaatcttttga
aaaaaacagaACATCCAAACCGAATGATTGTGTTGTGCATAGCGGTACGT
ATGGTAACCTGCAGGTCTTAAACATGGAAACGAACGGCCCATACACAACC
ATTCTcgaattttagtttttttttgtaaatagatTTAATAGTTTTTCTTA
TGATAGGTCCTTAGCGGAGAagtttttatgaaaatgtcttatttttatat
tattagCCACAAATTTACTTACAATTCAATAAGGGTCAAATTTGTGGACA
ATGCTTTGTTGGTAGCGTGGAGTTTAAC
Run BLAST on NCBI

protein sequence of TCONS_00015355-protein

>TCONS_00015355-protein ID=TCONS_00015355-protein|Name=TCONS_00015355-protein|organism=Clytia hemisphaerica|type=polypeptide|length=166bp
MSSLVGKCIMQQCLSAKLMVKPAEGDDSPAQYVQINQGVVVFICFLKDAA
IDHLPKIVKSILEVRLSFSEENQKRVSILDLPGDVLIVPQATLGGRMKGK
AIQYHNNVSKELGQQLYSDFVAQIKESFEKNRTSKPNDCVVHSGTYGNLQ
VLNMETNGPYTTILEF
Run BLAST on NCBI

transcript from alignment at sc0000210:172821..177816-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015355 ID=TCONS_00015355|Name=TCONS_00015355|organism=Clytia hemisphaerica|type=transcript|length=4996bp|location=Sequence derived from alignment at sc0000210:172821..177816- (Clytia hemisphaerica)
ATAAAACAGCAAAAATACAGCAGTCAGCACTAGGCAAATGAAGAACTGAA
AAAGGTCCATGTGGAAGAACTGAGGCCTTAAATACGCATGAGAGTGAGGC
TGTCCCAAGAGTCCGGATATATATCAAAACAAACCATTTGCATCTAAACT
CTGATATACAAAACATATATCAGAACCGAAAATCTTGAAAGACTTTTAAG
CTTTACTGCCAAAAATGAGTTCCTTAGTTGGCAAATGTATTATGCAGCAG
TGTTTATCAGCCAAACTGATGGTCAAGCCAGCTGAAGGTGATGACAGCCC
TGCTCAATATGTCCAAGTATATAAAATGTTTGTGATCTGAATATTGTATT
AACTTGTTCATGGTTATATACTTTAATTCATGAAACTCATTTGAAACGCA
AACATAAATTTCAGGTACTTTTCCATCTTGAATTTAACTGATTGTTTCGT
GGACAAAAAGTATAATAATGACGAGGTATTGAAGGGGAAAGAGTTAGATA
GTTTGTGTATAAAATTACATTCCCCCTAATTGTCATTTAATTCAGATCAA
CCAAGGTGTTGTTGTGTTCATTTGTTTTCTAAAAGATGCAGCAATCGATC
ATTTACCCAAAATTGGTGAGTTTCAAAGAAGTCTCTTCATTTTCAAAAAA
TGCCTTTTGCTTGTATTACCACAAAGGAAGAATGTGCTAAAATGTTGGAT
CCAAGTGTACCACAAATGTTCCAGGGCGTCTCAGGAAATTAGACTGCAAA
TTCAGGTATTTGAATTCTGGTTGTTAGGATGTGCTGGTTAATCTTTCAAA
AGCTTCTTTTGAGGTCATGAGCTCATGTTAAATGTTAGACTAAAAGGTTT
TCCTCGATTAACCAAATCAATGCCTTACTCATTTTGTATAATCTAGCTTT
CATCTTGAGTAATGAGAGTAGGCCTACCCCCCCCCCCCCAAAACTTTTTT
CTCAAATTTTAAAAGACGGTTTTTTTTTTTTTTTTAAAAAGAGGGTTTCT
CTGGGGAAAAGGGGGGGGGGCCCCCCCCCCCCCCAAGATATTTTCTCAAA
ATATTAAAGATATGTATCATTTCTTTATTATAGTGAAATCCATACTTGAA
GTTCGGCTGTCCTTTTCTGAGGAAAATCAAAAACGAGTTTCTATACTGGA
CTTGCCTGGTGACGTCCTGATCGTCCCTCAAGTATTCATTTTATTTTATG
ATTCTTTCCATTTGGAATTTGGGCTATCTTTGTGCTTTAGAGCAAAGCAG
AGAACAAAGAGCTGAAATATACAATCTTTATGGCCCAAATAAAGGATTTT
GCACAATGTTTTTTGATTCTCATATCTTGAGGGTATCTAAATTTTTCAAA
TATTCTAAAACCACTGACCTTTGGGGAACAAACTATGACACATACTTTAA
AATTTTTAAGCCTGAGGTATGGTTTTGACAGTTCACTTTTCACGCTGCCT
ATTTTAATTGTATAGACTATAGCCTATTGTAATTGTGAGATAGGCAGAAG
GTTTGCTGTCTAAAGTCAATGTATAGCATTCTTTCAACGTCAATATGTAA
TGTAATCTCTTTCAATCTTTTCCAGGGAAGATTTTAACTGCCAACTTTCT
GGCTACTTTAACAATAGAAGAAACAGTAGAAATTCAGCCGTCTTAAAACC
AGAGCTAAACCTCCCTTGCTGAAACTAAAAGCTACCATTCAGTAATTAAC
GATTTCTATAATTTCAGGCCACTCTCGGTGGAAGAATGAAAGGCAAAGCC
ATTCAGTAAGAACAAATACATTATAAACCATCATTCTGTGAAAATTTTTC
AACAAGACCCACTGTCCTTTATAAACCATGGGTCAAGCTATATCCCCCAT
TGATCGGAGTTTTTTCCAAAGTTCGACCGCGCTATTATCCCAAATCAAAA
TAATAAAGGATAAGTAGATCGAGCTATACCATACATTATACCTCTATTGA
GTAAGTGCTACCATTAGGGTACCACGTTCAAAAAAACTCTGAGCAAAAGG
TTCTGCTTGGCCGGGATTGAGAAAATACCTCTAGGATTTATATAAAGCTC
AGTGACCAGATCAAAAGAATTAGAGCCAAATCTACTTTTCATAATTTGAC
CATTTTCACCCGTTTGCAAAGTATCNAACTAATGCCAAATCTACTTTTCA
TAATTTGACCATTTTCACCCGTTTGGAAAGTATTTATTATTTATTTATCA
TGTTGGAAAAAAAACTTTTATACAAACGATTTATATACTCTCCATAGTTC
TAAAACCACAATTTTTCATTTCTTCTTCTTTTTTATATCCTACCTTTTTG
TTTAGATATCATAATAATGTTTCTAAGGAGCTTGGTCAACAGTTGTATTC
TGATTTCGTTGCACAGATCAAGGTTAGTGCTTTAGTGAGAATTGCAATTT
TTATCTTGCTCAAAAAATGGTGTTTCATGACAATATATTACAATATATAT
AATATAAACTTGAACTTTGATGGGTCAAAAGCTATACTGAATAATTATTT
GAAGGGGTATACCCTCTATGAAACATCCGTAATGACCCATCAAAATTTAA
GTTGATTCTTTCAAAACAGGGTAAATTATTTCTGGCACGCCTGATAGGAT
AAAATGACGTCGAATTTCTTGAAAAGCTCACGGAATCAGACCAAAGCTCC
TAAAGTTATAGGTGTAAATACGTTAACTCTTATGAATTTTTTTATCATTT
TTTATCACCATTGCAAGTCTTGAAATAAAGATCTGACATTTTCTTTGACC
GACTTGAAATCGAGCCATGCCACTGCCATTAAATATTGCATCAATTGTCT
GAAATGGAAGCATAATATAATATGTATATTATATATCTTTCTATAATTTT
TAACCTTCAAGATTATATAGGGCTAAAAGATTGTTGTGCAAAAAATCCTA
TGTCTTAACATTTATACTTTTCTTTTTACCAGGAATCTTTTGAAAAAAAC
AGAACATCCAAACCGAATGATTGTGTTGTGCATAGCGGTAACTGCTTGTC
TTTCTTTAAAGGGATTATCAGATGATTTGAGATAATTAGGCTATTGTCCT
TAATAAAACCTATAACTATTTTTTCCTAACTTTTTTTCCGAAGTCTGCAT
ATCACAGTTTAAATTTTCTAAAAATGGGTTCATATAACTGAAAATAGAAA
ATGGTTAGGCCTACTTCTTTTTCGAAATTCTTTGGATTTTTCTACTACCG
TACAAAAAAATCCAAGAAAAACTCGAAAACTTGCGAACGAAAAATAAATT
CCGAGTTAGCTAACTCGAAAAAAGGTTTTGTGAAAAAGAAATTCGAGTTA
GCTAACTCGAAAAGGTTTTTACGAAAAATAAAATTCGAGTTATTTTAACT
CGAAAAATATTTTTTGAAAATAAAAAATCGAGTTAGAGTCGAGTGACGTC
AGAATTTGCACTTTCATGACGTCATAATTTAGCTAACTCGAAAATTCCTA
ACTCGAAAATGGCTAACTCCAAGTTTTCTAACTCGAAGATTCCGGGCCTC
AAAAATTTTCAGCTTTTGCTCAGAAATCCCACATGTCTAATATCTCAAAC
CATAGTCCGTATAAAAAACTCTGGTTTGGAAGCCTTTTGTTTTTTTCCAT
TGTTTCTTACTTGGACTTGTGCTTGAGAAATTAGTTTGTTTTGCTCACTT
TTTGATCATGTGATTAAATCCTAAACCAATCACATGAGGAATACTTGGCA
ACGTGATCAAAAACTGAGCAAATCGATTTTTATCTTTTGATATTAACAAA
GGAAAAGCTAACAAAAAGTTAAAACAATAAGCTTCCAGACCAGTGTTTTT
TATAAGGACTATGCTCAAACCATCTGATTAATCCCTTTAACTCAAAATGG
AGTAATTTATTAGAATATTTGATTTAAACCTTGCTTGTCATTCTCTATCA
TTTTTCATTCAAAGTTTTTTTCTCACAACATTCTGTCTTAATACGATCTA
GTCCTTTTACATCAGCTATCATCAATTTTATATGATCGACGACAATTCAG
TCACAAAACCGTGGTATGCCACTTTTTAGGTTCGATCATTATACATATAT
CAACCTTTAAAACGCGAGGAGACTGGGTTGAAGTTTACCAGGAAGTAATG
TCGTCGAAATGCCTGAAGTCACATAGTGACCTCATAGTCCTCCCCCTTTT
AAAAGCCTGCTAGGACACTACTATGAGTCGGTGTATTGAGATCCTTACTA
CCGACAAAGAACTTTGACATGATTTTATGTAAATTCATTACCAATACTTG
ATAATAGCGAAAAATACTAGAAAAGGATTTTAAACCTTTCTTAAGCAAGA
AAAAGTGAAATGTTAAGATTTGCGCCGGCGTTTGTGTGAAAACCACGCAG
GTTACCCGTTTTGGATTGAAAATAAGTGGCTTCATTTCCCATCCAAAAAT
CTTCTGGCTCTAAACTTATGGTTGTATAGGTGTATTCATGCAGCCATACA
ATCATTTTTTCAAAATGACCAGTTCTACATACATGGAGACATGAAGAAAG
GAATAAATTTCGTCCCCGGTAGGAAAGTACCCTGGAAATTGATTCATATT
TCATCCACACTCAAAAATAAATGTTTAAAAATTGCACTCCAGAAGCATCC
CCACTGGATTTTTTAACCTTTGATTAATATAATTTTTATCCCCATTGGGA
TTTCAGTAGGAATTTTTATCGCCACTGAGGAAAAAGGTTCCAGCGGGGCT
GTGAGACAGGGGTGTTAAAAGCAAAGTGCCACCCTTTTTAAATAAATAAC
GTTTATTTTTAGGTACGTATGGTAACCTGCAGGTCTTAAACATGGAAACG
AACGGCCCATACACAACCATTCTCGAATTTTAGTTTTTTTTTGTAAATAG
ATTTAATAGTTTTTCTTATGATAGGTCCTTAGCGGAGAAGTTTTTATGAA
AATGTCTTATTTTTATATTATTAGCCACAAATTTACTTACAATTCAATAA
GGGTCAAATTTGTGGACAATGCTTTGTTGGTAGCGTGGAGTTTAAC

Coding sequence (CDS) from alignment at sc0000210:172821..177816-

>TCONS_00015355 ID=TCONS_00015355|Name=TCONS_00015355|organism=Clytia hemisphaerica|type=CDS|length=3507bp|location=Sequence derived from alignment at sc0000210:172821..177816- (Clytia hemisphaerica)
GTACGTATGGTAACCTGCAGGTCTTAAACATGGAAACGAACGGCCCATAC
ACAACCATTCTCGAATTTTAGGAATCTTTTGAAAAAAACAGAACATCCAA
ACCGAATGATTGTGTTGTGCATAGCGATATCATAATAATGTTTCTAAGGA
GCTTGGTCAACAGTTGTATTCTGATTTCGTTGCACAGATCAAGGCCACTC
TCGGTGGAAGAATGAAAGGCAAAGCCATTCATGAAATCCATACTTGAAGT
TCGGCTGTCCTTTTCTGAGGAAAATCAAAAACGAGTTTCTATACTGGACT
TGCCTGGTGACGTCCTGATCGTCCCTCAAATCAACCAAGGTGTTGTTGTG
TTCATTTGTTTTCTAAAAGATGCAGCAATCGATCATTTACCCAAAATTGA
TGAGTTCCTTAGTTGGCAAATGTATTATGCAGCAGTGTTTATCAGCCAAA
CTGATGGTCAAGCCAGCTGAAGGTGATGACAGCCCTGCTCAATATGTCCA
AGTACGTATGGTAACCTGCAGGTCTTAAACATGGAAACGAACGGCCCATA
CACAACCATTCTCGAATTTTAGGAATCTTTTGAAAAAAACAGAACATCCA
AACCGAATGATTGTGTTGTGCATAGCGATATCATAATAATGTTTCTAAGG
AGCTTGGTCAACAGTTGTATTCTGATTTCGTTGCACAGATCAAGGCCACT
CTCGGTGGAAGAATGAAAGGCAAAGCCATTCATGAAATCCATACTTGAAG
TTCGGCTGTCCTTTTCTGAGGAAAATCAAAAACGAGTTTCTATACTGGAC
TTGCCTGGTGACGTCCTGATCGTCCCTCAAATCAACCAAGGTGTTGTTGT
GTTCATTTGTTTTCTAAAAGATGCAGCAATCGATCATTTACCCAAAATTG
ATGAGTTCCTTAGTTGGCAAATGTATTATGCAGCAGTGTTTATCAGCCAA
ACTGATGGTCAAGCCAGCTGAAGGTGATGACAGCCCTGCTCAATATGTCC
AAGTACGTATGGTAACCTGCAGGTCTTAAACATGGAAACGAACGGCCCAT
ACACAACCATTCTCGAATTTTAGGAATCTTTTGAAAAAAACAGAACATCC
AAACCGAATGATTGTGTTGTGCATAGCGATATCATAATAATGTTTCTAAG
GAGCTTGGTCAACAGTTGTATTCTGATTTCGTTGCACAGATCAAGGCCAC
TCTCGGTGGAAGAATGAAAGGCAAAGCCATTCATGAAATCCATACTTGAA
GTTCGGCTGTCCTTTTCTGAGGAAAATCAAAAACGAGTTTCTATACTGGA
CTTGCCTGGTGACGTCCTGATCGTCCCTCAAATCAACCAAGGTGTTGTTG
TGTTCATTTGTTTTCTAAAAGATGCAGCAATCGATCATTTACCCAAAATT
GATGAGTTCCTTAGTTGGCAAATGTATTATGCAGCAGTGTTTATCAGCCA
AACTGATGGTCAAGCCAGCTGAAGGTGATGACAGCCCTGCTCAATATGTC
CAAGTACGTATGGTAACCTGCAGGTCTTAAACATGGAAACGAACGGCCCA
TACACAACCATTCTCGAATTTTAGGAATCTTTTGAAAAAAACAGAACATC
CAAACCGAATGATTGTGTTGTGCATAGCGATATCATAATAATGTTTCTAA
GGAGCTTGGTCAACAGTTGTATTCTGATTTCGTTGCACAGATCAAGGCCA
CTCTCGGTGGAAGAATGAAAGGCAAAGCCATTCATGAAATCCATACTTGA
AGTTCGGCTGTCCTTTTCTGAGGAAAATCAAAAACGAGTTTCTATACTGG
ACTTGCCTGGTGACGTCCTGATCGTCCCTCAAATCAACCAAGGTGTTGTT
GTGTTCATTTGTTTTCTAAAAGATGCAGCAATCGATCATTTACCCAAAAT
TGATGAGTTCCTTAGTTGGCAAATGTATTATGCAGCAGTGTTTATCAGCC
AAACTGATGGTCAAGCCAGCTGAAGGTGATGACAGCCCTGCTCAATATGT
CCAAGTACGTATGGTAACCTGCAGGTCTTAAACATGGAAACGAACGGCCC
ATACACAACCATTCTCGAATTTTAGGAATCTTTTGAAAAAAACAGAACAT
CCAAACCGAATGATTGTGTTGTGCATAGCGATATCATAATAATGTTTCTA
AGGAGCTTGGTCAACAGTTGTATTCTGATTTCGTTGCACAGATCAAGGCC
ACTCTCGGTGGAAGAATGAAAGGCAAAGCCATTCATGAAATCCATACTTG
AAGTTCGGCTGTCCTTTTCTGAGGAAAATCAAAAACGAGTTTCTATACTG
GACTTGCCTGGTGACGTCCTGATCGTCCCTCAAATCAACCAAGGTGTTGT
TGTGTTCATTTGTTTTCTAAAAGATGCAGCAATCGATCATTTACCCAAAA
TTGATGAGTTCCTTAGTTGGCAAATGTATTATGCAGCAGTGTTTATCAGC
CAAACTGATGGTCAAGCCAGCTGAAGGTGATGACAGCCCTGCTCAATATG
TCCAAGTACGTATGGTAACCTGCAGGTCTTAAACATGGAAACGAACGGCC
CATACACAACCATTCTCGAATTTTAGGAATCTTTTGAAAAAAACAGAACA
TCCAAACCGAATGATTGTGTTGTGCATAGCGATATCATAATAATGTTTCT
AAGGAGCTTGGTCAACAGTTGTATTCTGATTTCGTTGCACAGATCAAGGC
CACTCTCGGTGGAAGAATGAAAGGCAAAGCCATTCATGAAATCCATACTT
GAAGTTCGGCTGTCCTTTTCTGAGGAAAATCAAAAACGAGTTTCTATACT
GGACTTGCCTGGTGACGTCCTGATCGTCCCTCAAATCAACCAAGGTGTTG
TTGTGTTCATTTGTTTTCTAAAAGATGCAGCAATCGATCATTTACCCAAA
ATTGATGAGTTCCTTAGTTGGCAAATGTATTATGCAGCAGTGTTTATCAG
CCAAACTGATGGTCAAGCCAGCTGAAGGTGATGACAGCCCTGCTCAATAT
GTCCAAGTACGTATGGTAACCTGCAGGTCTTAAACATGGAAACGAACGGC
CCATACACAACCATTCTCGAATTTTAGGAATCTTTTGAAAAAAACAGAAC
ATCCAAACCGAATGATTGTGTTGTGCATAGCGATATCATAATAATGTTTC
TAAGGAGCTTGGTCAACAGTTGTATTCTGATTTCGTTGCACAGATCAAGG
CCACTCTCGGTGGAAGAATGAAAGGCAAAGCCATTCATGAAATCCATACT
TGAAGTTCGGCTGTCCTTTTCTGAGGAAAATCAAAAACGAGTTTCTATAC
TGGACTTGCCTGGTGACGTCCTGATCGTCCCTCAAATCAACCAAGGTGTT
GTTGTGTTCATTTGTTTTCTAAAAGATGCAGCAATCGATCATTTACCCAA
AATTGATGAGTTCCTTAGTTGGCAAATGTATTATGCAGCAGTGTTTATCA
GCCAAACTGATGGTCAAGCCAGCTGAAGGTGATGACAGCCCTGCTCAATA
TGTCCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008583XLOC_008583Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015355-proteinTCONS_00015355-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015355-exon-sc0000210-1575043694:177501..177816TCONS_00015355-exon-sc0000210-1575043694:177501..177816Clytia hemisphaericaexon
TCONS_00015355-exon-sc0000210-1575043694:177202..177271TCONS_00015355-exon-sc0000210-1575043694:177202..177271Clytia hemisphaericaexon
TCONS_00015355-exon-sc0000210-1575043694:176636..176733TCONS_00015355-exon-sc0000210-1575043694:176636..176733Clytia hemisphaericaexon
TCONS_00015355-exon-sc0000210-1575043694:176062..176099TCONS_00015355-exon-sc0000210-1575043694:176062..176099Clytia hemisphaericaexon
TCONS_00015355-exon-sc0000210-1575043694:175445..175511TCONS_00015355-exon-sc0000210-1575043694:175445..175511Clytia hemisphaericaexon
TCONS_00015355-exon-sc0000210-1575043694:174830..174884TCONS_00015355-exon-sc0000210-1575043694:174830..174884Clytia hemisphaericaexon
TCONS_00015355-exon-sc0000210-1575043694:172821..173054TCONS_00015355-exon-sc0000210-1575043694:172821..173054Clytia hemisphaericaexon
TCONS_00015355-exon-sc0000210-1510915933:177501..177816TCONS_00015355-exon-sc0000210-1510915933:177501..177816Clytia hemisphaericaexon
TCONS_00015355-exon-sc0000210-1510915933:177202..177271TCONS_00015355-exon-sc0000210-1510915933:177202..177271Clytia hemisphaericaexon
TCONS_00015355-exon-sc0000210-1510915933:176636..176733TCONS_00015355-exon-sc0000210-1510915933:176636..176733Clytia hemisphaericaexon
TCONS_00015355-exon-sc0000210-1510915933:176062..176099TCONS_00015355-exon-sc0000210-1510915933:176062..176099Clytia hemisphaericaexon
TCONS_00015355-exon-sc0000210-1510915933:175445..175511TCONS_00015355-exon-sc0000210-1510915933:175445..175511Clytia hemisphaericaexon
TCONS_00015355-exon-sc0000210-1510915933:174830..174884TCONS_00015355-exon-sc0000210-1510915933:174830..174884Clytia hemisphaericaexon
TCONS_00015355-exon-sc0000210-1510915933:172821..173054TCONS_00015355-exon-sc0000210-1510915933:172821..173054Clytia hemisphaericaexon
TCONS_00015355-exon-sc0000210-1491911889:177501..177816TCONS_00015355-exon-sc0000210-1491911889:177501..177816Clytia hemisphaericaexon
TCONS_00015355-exon-sc0000210-1491911889:177202..177271TCONS_00015355-exon-sc0000210-1491911889:177202..177271Clytia hemisphaericaexon
TCONS_00015355-exon-sc0000210-1491911889:176636..176733TCONS_00015355-exon-sc0000210-1491911889:176636..176733Clytia hemisphaericaexon
TCONS_00015355-exon-sc0000210-1491911889:176062..176099TCONS_00015355-exon-sc0000210-1491911889:176062..176099Clytia hemisphaericaexon
TCONS_00015355-exon-sc0000210-1491911889:175445..175511TCONS_00015355-exon-sc0000210-1491911889:175445..175511Clytia hemisphaericaexon
TCONS_00015355-exon-sc0000210-1491911889:174830..174884TCONS_00015355-exon-sc0000210-1491911889:174830..174884Clytia hemisphaericaexon
TCONS_00015355-exon-sc0000210-1491911889:172821..173054TCONS_00015355-exon-sc0000210-1491911889:172821..173054Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000210supercontigsc0000210:172821..177816 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
24.132	25.4771	30.888	31.119	17.3916	13.5897	15.8575	14.8404	11.3301	11.5479	4.84589	11.9351	4.67837	6.28277	9.56823	10.9253	12.0144	14.6596	5.29907	4.74989	6.43399	6.22772	16.1944	15.3016	9.27575	9.2335	11.0352	9.80488	9.9225	10.5704
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003732Daa-tRNA_deacyls_DTD
IPR023509DTD-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0051499D-aminoacyl-tRNA deacylase activity
GO:0002161aminoacyl-tRNA editing activity
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005737 cytoplasm
molecular_function GO:0002161 aminoacyl-tRNA editing activity
molecular_function GO:0051499 D-aminoacyl-tRNA deacylase activity
Blast
[Close]
BLAST of TCONS_00015355 vs. Swiss-Prot (Human)
Match: DTD2 (Putative D-tyrosyl-tRNA(Tyr) deacylase 2 OS=Homo sapiens GN=DTD2 PE=2 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 1.034e-50
Identity = 79/159 (49.69%), Postives = 115/159 (72.33%), Query Frame = 2 
Query:  233 KCIMQQCLSAKLMVKPAEGDDSPAQYVQINQGVVVFICFLKDAAIDHLPKIVKSILEVRLSFSEENQKRVSILDLPGDVLIVPQATLGGRMKGKAIQYHNNVSKELGQQLYSDFVAQIKESFEKNRTSKPNDCVVHSGTYGNLQVLNMETNGPYTTILE 709
            + ++QQCL A+L ++PA+GD + AQ+V++ +G+V+++CF K A  + LPK+V ++L V+LS   EN K VSILDLPG++LI+PQATLGGR+KG+ +QYH+N  KE G +LYS FV   ++    N        VV  GTYGN QVL ++TNGP+T ++E
Sbjct:   11 RALLQQCLHARLQIRPADGDVA-AQWVEVQRGLVIYVCFFKGADKELLPKMVNTLLNVKLS-ETENGKHVSILDLPGNILIIPQATLGGRLKGRNMQYHSNSGKEEGFELYSQFVTLCEKEVAANSKCAEARVVVEHGTYGNRQVLKLDTNGPFTHLIE 167
The following BLAST results are available for this feature:
BLAST of TCONS_00015355 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DTD21.034e-5049.69Putative D-tyrosyl-tRNA(Tyr) deacylase 2 OS=Homo s... [more]
back to top