TCONS_00015318 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015318
Unique NameTCONS_00015318
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length552

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015318 ID=TCONS_00015318|Name=TCONS_00015318|organism=Clytia hemisphaerica|type=transcript|length=552bp
TTTCAGACCCTAGATGACGCCTGTCGGTTGATAGGGAAAAATTTCTTAAT
CGCCAAGATAGATTTGAGACACGCGTACAGATCTGTCCCTGTCCACCCTG
CTAACCATGCTGCTCTTGGTTTGAAGTGGAAATTTAGTGGGGATGAGCAC
TACACGTATCTAAAAGACACACGTCTCCCTTTTGGAGCACGCAGCGCATC
TGGTATATTTCATCGTTTGACCCAGAGTGTTGGGCGCATGATGCAGAGAA
GAGGCTCTCCTTTGATCATTGTATACCTTGATGATTTCCTGGTCATTGGT
CGGACTCGGCAGGAATGCCAAGCTGCTTTTGATACCCTTCACTCACTCCT
GATATCCCTAGGTTTCACTATCAGTCCTTCTAAGCTTGTTTCACCTTGCC
AAAAACTTGTGTTTCTTGGTGTTGAGATTGATACTACAATATTGAACTCT
CGCACTTCCTGCCAAAAAGCTAGGTGACCTGAGAGACGTCCTGATGTCTT
TTCAGTTCCGAGCTCGTGCATCTAAAAGACAGTTACAACAGCTGGCTGAC
CG
Run BLAST on NCBI

protein sequence of TCONS_00015318-protein

>TCONS_00015318-protein ID=TCONS_00015318-protein|Name=TCONS_00015318-protein|organism=Clytia hemisphaerica|type=polypeptide|length=158bp
FQTLDDACRLIGKNFLIAKIDLRHAYRSVPVHPANHAALGLKWKFSGDEH
YTYLKDTRLPFGARSASGIFHRLTQSVGRMMQRRGSPLIIVYLDDFLVIG
RTRQECQAAFDTLHSLLISLGFTISPSKLVSPCQKLVFLGVEIDTTILNS
RTSCQKAR
Run BLAST on NCBI

transcript from alignment at sc0000208:394896..395447

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015318 ID=TCONS_00015318|Name=TCONS_00015318|organism=Clytia hemisphaerica|type=transcript|length=552bp|location=Sequence derived from alignment at sc0000208:394896..395447 (Clytia hemisphaerica)
CGGTCAGCCAGCTGTTGTAACTGTCTTTTAGATGCACGAGCTCGGAACTG
AAAAGACATCAGGACGTCTCTCAGGTCACCTAGCTTTTTGGCAGGAAGTG
CGAGAGTTCAATATTGTAGTATCAATCTCAACACCAAGAAACACAAGTTT
TTGGCAAGGTGAAACAAGCTTAGAAGGACTGATAGTGAAACCTAGGGATA
TCAGGAGTGAGTGAAGGGTATCAAAAGCAGCTTGGCATTCCTGCCGAGTC
CGACCAATGACCAGGAAATCATCAAGGTATACAATGATCAAAGGAGAGCC
TCTTCTCTGCATCATGCGCCCAACACTCTGGGTCAAACGATGAAATATAC
CAGATGCGCTGCGTGCTCCAAAAGGGAGACGTGTGTCTTTTAGATACGTG
TAGTGCTCATCCCCACTAAATTTCCACTTCAAACCAAGAGCAGCATGGTT
AGCAGGGTGGACAGGGACAGATCTGTACGCGTGTCTCAAATCTATCTTGG
CGATTAAGAAATTTTTCCCTATCAACCGACAGGCGTCATCTAGGGTCTGA
AA

Coding sequence (CDS) from alignment at sc0000208:394896..395447

>TCONS_00015318 ID=TCONS_00015318|Name=TCONS_00015318|organism=Clytia hemisphaerica|type=CDS|length=477bp|location=Sequence derived from alignment at sc0000208:394896..395447 (Clytia hemisphaerica)
TCACCTAGCTTTTTGGCAGGAAGTGCGAGAGTTCAATATTGTAGTATCAA
TCTCAACACCAAGAAACACAAGTTTTTGGCAAGGTGAAACAAGCTTAGAA
GGACTGATAGTGAAACCTAGGGATATCAGGAGTGAGTGAAGGGTATCAAA
AGCAGCTTGGCATTCCTGCCGAGTCCGACCAATGACCAGGAAATCATCAA
GGTATACAATGATCAAAGGAGAGCCTCTTCTCTGCATCATGCGCCCAACA
CTCTGGGTCAAACGATGAAATATACCAGATGCGCTGCGTGCTCCAAAAGG
GAGACGTGTGTCTTTTAGATACGTGTAGTGCTCATCCCCACTAAATTTCC
ACTTCAAACCAAGAGCAGCATGGTTAGCAGGGTGGACAGGGACAGATCTG
TACGCGTGTCTCAAATCTATCTTGGCGATTAAGAAATTTTTCCCTATCAA
CCGACAGGCGTCATCTAGGGTCTGAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008568XLOC_008568Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015318-exon-sc0000208-1491911889:394896..395447TCONS_00015318-exon-sc0000208-1491911889:394896..395447Clytia hemisphaericaexon
TCONS_00015318-exon-sc0000208-1510915933:394896..395447TCONS_00015318-exon-sc0000208-1510915933:394896..395447Clytia hemisphaericaexon
TCONS_00015318-exon-sc0000208-1575043694:394896..395447TCONS_00015318-exon-sc0000208-1575043694:394896..395447Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015318-proteinTCONS_00015318-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000208supercontigsc0000208:394896..395447 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.277348	0	0	0	0.753203	2.42897	3.69243	2.31047	2.48145	3.57024	0.959843	1.72733	1.48021	3.72683	0.191862	0	0.225743	0	0	0.115057	0.400022	0.25511	0.118595	0	3.62771	2.91388	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00015318 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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