TCONS_00015315 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015315
Unique NameTCONS_00015315
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length248

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015315 ID=TCONS_00015315|Name=TCONS_00015315|organism=Clytia hemisphaerica|type=transcript|length=248bp
TCGTGTTGGAATTTCGCTTCTTCTATTACATTTATGATACCAAGTCCCCC
GAATTTCGTCGGCAAAGCCATCAAGCGACGTTCAGTATCATTGCATTGTC
TTCCATTGCAGAAGGCGGGAATCAAGTGGAATCTGATGACGTTTTCAAGT
GGTATCAGGTATTCGTCGAGGTCTTTGACCGTACGGAATATGTAGTTGAA
TTTTTGGCGATATCCAACTACGAATGAAATATACGCAGCTTGTGGTTG
Run BLAST on NCBI

transcript from alignment at sc0000208:316045..316292

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015315 ID=TCONS_00015315|Name=TCONS_00015315|organism=Clytia hemisphaerica|type=transcript|length=248bp|location=Sequence derived from alignment at sc0000208:316045..316292 (Clytia hemisphaerica)
CAACCACAAGCTGCGTATATTTCATTCGTAGTTGGATATCGCCAAAAATT
CAACTACATATTCCGTACGGTCAAAGACCTCGACGAATACCTGATACCAC
TTGAAAACGTCATCAGATTCCACTTGATTCCCGCCTTCTGCAATGGAAGA
CAATGCAATGATACTGAACGTCGCTTGATGGCTTTGCCGACGAAATTCGG
GGGACTTGGTATCATAAATGTAATAGAAGAAGCGAAATTCCAACACGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008565XLOC_008565Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015315-exon-sc0000208-1491911889:316045..316292TCONS_00015315-exon-sc0000208-1491911889:316045..316292Clytia hemisphaericaexon
TCONS_00015315-exon-sc0000208-1510915933:316045..316292TCONS_00015315-exon-sc0000208-1510915933:316045..316292Clytia hemisphaericaexon
TCONS_00015315-exon-sc0000208-1575043694:316045..316292TCONS_00015315-exon-sc0000208-1575043694:316045..316292Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000208supercontigsc0000208:316045..316292 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.466258	0.429576	1.75311	5.2915	0.482474	1.55153	0.921821	1.3234	3.54761	0	0.771251	8.3243	9.60732	1.08594	2.07463	1.78209	1.0399	9.55578	7.37324	0.0358338	0	0.422012	1.14976	3.10563	1.51648	0	1.00927	1.19292	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00015315 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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