TCONS_00015306 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015306
Unique NameTCONS_00015306
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length360

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015306 ID=TCONS_00015306|Name=TCONS_00015306|organism=Clytia hemisphaerica|type=transcript|length=360bp
attcaatatttcttttattttgaaaatcagccATGATATCTTGACCCCct
gttttgaaaacaaatcacTGATAACTTAAGGTTTATTCAAACAATATTAC
TTCTGTTGAAACGGGGGACCTTTCCTTTACTGCGCATGTTTTTATAATAT
TGAATTATTGTAATGTGATTTCAGGTACCAACttttttgttgaaatcttt
ATGTTGCGTCAAAATCTTTATGTatctttaaagtatttttttcattgagT
GCGATATCTATTTCCACTCAAAACTTATGTCGACTGTCAATACGTTTTTT
TATGTCAAGACAGTGCGAATTTTCATATGTTCtcttttttaaaaacagaa
gatgaaaaag
Run BLAST on NCBI

transcript from alignment at sc0000208:183429..183788

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015306 ID=TCONS_00015306|Name=TCONS_00015306|organism=Clytia hemisphaerica|type=transcript|length=360bp|location=Sequence derived from alignment at sc0000208:183429..183788 (Clytia hemisphaerica)
ctttttcatcttctgtttttaaaaaagaGAACATATGAAAATTCGCACTG
TCTTGACATAAAAAAACGTATTGACAGTCGACATAAGTTTTGAGTGGAAA
TAGATATCGCActcaatgaaaaaaatactttaaagatACATAAAGATTTT
GACGCAACATaaagatttcaacaaaaaaGTTGGTACCTGAAATCACATTA
CAATAATTCAATATTATAAAAACATGCGCAGTAAAGGAAAGGTCCCCCGT
TTCAACAGAAGTAATATTGTTTGAATAAACCTTAAGTTATCAgtgatttg
ttttcaaaacagGGGGTCAAGATATCATggctgattttcaaaataaaaga
aatattgaat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008556XLOC_008556Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015306-exon-sc0000208-1491911889:183429..183788TCONS_00015306-exon-sc0000208-1491911889:183429..183788Clytia hemisphaericaexon
TCONS_00015306-exon-sc0000208-1510915933:183429..183788TCONS_00015306-exon-sc0000208-1510915933:183429..183788Clytia hemisphaericaexon
TCONS_00015306-exon-sc0000208-1575043694:183429..183788TCONS_00015306-exon-sc0000208-1575043694:183429..183788Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000208supercontigsc0000208:183429..183788 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0.565584	0.593968	0.490484	1.19019	0.156477	0.312518	0.48683	0.533654	0.286346	0.352755	0.542344	0.499518	0.52271	2.72598	4.32132	1.34696	0.734747	0	0	0.644331	0.687648	0.260778	0.797075
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00015306 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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