TCONS_00015301 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015301
Unique NameTCONS_00015301
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length407

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015301 ID=TCONS_00015301|Name=TCONS_00015301|organism=Clytia hemisphaerica|type=transcript|length=407bp
NNAAAGTATCTTCGTATCCAGTTTCTTGTTGTAGTGATTACTCGCCTTTA
GTTCTCACCACCTTTCTGGTCAGCATCTCACTCGTGGCCAGCTGGTGagt
ttttctgctgttttcatTTTGTTCTTTCTCCAGGACTTAGGTTAGGTTTT
TGTCCTGCCTCTGGTTTTCTCTGTTTGGcctcatttttctctttttgttt
gtCATTTTTCTGTATTACACATTTTTAGGTTAAGTTAAGTTAGAATGTTC
TACAATTTTCTGTTAGattgtcttttatttttctcatatgTATCTCAGTT
TAATCATTTACGTTATTTAGGCAATAATTTTCTCTAATGAGgaccaaatt
ttgtttttctttcttcattcAGTTTGAATATTATCTATTCTCGCATTCGA
TCCTCTC
Run BLAST on NCBI

transcript from alignment at sc0000208:66109..66515

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015301 ID=TCONS_00015301|Name=TCONS_00015301|organism=Clytia hemisphaerica|type=transcript|length=407bp|location=Sequence derived from alignment at sc0000208:66109..66515 (Clytia hemisphaerica)
GAGAGGATCGAATGCGAGAATAGATAATATTCAAACTgaatgaagaaaga
aaaacaaaatttggtcCTCATTAGAGAAAATTATTGCCTAAATAACGTAA
ATGATTAAACTGAGATAcatatgagaaaaataaaagacaatCTAACAGAA
AATTGTAGAACATTCTAACTTAACTTAACCTAAAAATGTGTAATACAGAA
AAATGacaaacaaaaagagaaaaatgaggCCAAACAGAGAAAACCAGAGG
CAGGACAAAAACCTAACCTAAGTCCTGGAGAAAGAACAAAatgaaaacag
cagaaaaactCACCAGCTGGCCACGAGTGAGATGCTGACCAGAAAGGTGG
TGAGAACTAAAGGCGAGTAATCACTACAACAAGAAACTGGATACGAAGAT
ACTTTNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008551XLOC_008551Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015301-exon-sc0000208-1491911889:66109..66515TCONS_00015301-exon-sc0000208-1491911889:66109..66515Clytia hemisphaericaexon
TCONS_00015301-exon-sc0000208-1510915933:66109..66515TCONS_00015301-exon-sc0000208-1510915933:66109..66515Clytia hemisphaericaexon
TCONS_00015301-exon-sc0000208-1575043694:66109..66515TCONS_00015301-exon-sc0000208-1575043694:66109..66515Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000208supercontigsc0000208:66109..66515 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.19624	3.14513	2.02877	2.97726	1.69144	0.954716	2.07328	1.29399	0.452976	1.49622	0.181534	0.715999	0.119167	0.247513	0	0.109188	0	0.137869	0	0.199316	0.173242	1.26752	5.54701	5.22982	0.769513	0.858465	3.68538	5.7686	3.57978	4.05247
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00015301 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top