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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015261 ID=TCONS_00015261|Name=TCONS_00015261|organism=Clytia hemisphaerica|type=transcript|length=732bp GAAGTTTTGTTCGATTTAGAGACGTATAATGAGTAGAACGAAATTTTTTA TCATGTGGTTTTGAAATGAAGAATTACATTTTCTTCGTTGTGCTTGGGTT GGCGTCGATTGTAACGTTTCCCCAAGCCCTGGCTTGTAAATACACGCGGA TCCATATTGCTACATATGAAAATGACGTCAACCTAATGACTGTCTACATT TTATGGGACGAATCGCAATGCCCTGGTACCAACAAATTCATTATATTCTT TCAAAAACAACTCTTTGGAGGAGCTCATCAGGCAAATATCGAAACACCAA TCAGAGAAAATGGAAAGAAATTGTTACTCCACGCTGACAGTGTTTATTTT GTACGTATGAACGCACTATACAACAGGATTATTTTCACCGGAAAAAATGG AGATTGTGAGCGTAAGCCATACTACCAACTTCTGACAGCCAATGGCAATA ACCAACCAGAGGATTGGAGCTACAACTCTTCGATGTGGCAATTAGAAGAA TACAGAGAAGCACGCATTAGTTCTGGTTTAACCGGCTTAACCAAGGTCAG TGAAAAAGCTAAGAATCGAAAATTCAATCAATTTTGTATTGGTACAAAGC GTGGCAATTATTTCCATTGGGTTAAAACTGGTTGTAACCAGAGTGTATCT TTGAAGAGTGCTGTCCATGGTGGATGTACGTTCGACCAAGAAACAAGTTC CAACAATGCTAGTTTTGGACGAATGGTTAATC Run BLAST on NCBI protein sequence of TCONS_00015261-protein >TCONS_00015261-protein ID=TCONS_00015261-protein|Name=TCONS_00015261-protein|organism=Clytia hemisphaerica|type=polypeptide|length=222bp
MKNYIFFVVLGLASIVTFPQALACKYTRIHIATYENDVNLMTVYILWDES QCPGTNKFIIFFQKQLFGGAHQANIETPIRENGKKLLLHADSVYFVRMNA LYNRIIFTGKNGDCERKPYYQLLTANGNNQPEDWSYNSSMWQLEEYREAR ISSGLTGLTKVSEKAKNRKFNQFCIGTKRGNYFHWVKTGCNQSVSLKSAV HGGCTFDQETSSNNASFGRMVN Run BLAST on NCBI transcript from alignment at sc0000208:145629..150717+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00015261 ID=TCONS_00015261|Name=TCONS_00015261|organism=Clytia hemisphaerica|type=transcript|length=5089bp|location=Sequence derived from alignment at sc0000208:145629..150717+ (Clytia hemisphaerica) GAAGTTTTGTTCGATTTAGAGACGTATAATGAGGTATGAATTTATTAATC
CTATGACGAGCGAAAAGCTAAACAAAAGGGGATTGGGTTCTAGTTTGCTA
GCTTagattactttaggcgtacaaactttcgcgagcacaAACGTGTTCCT
GCCTTTCGTTATTTAAAGCGAACTTAAACTGAAGTTGTCACCAGAGTTCT
AAAAAATCACCTAAGTGATCAGACCGTAAAAGAAAAGCTTGCTCCTCAAT
AGAGTCTATGAGTGCTCAAATAACCTAAGTTCAGAGCTCACAGATAAATA
TTTTACGTTATTCGAACCGGTTTAACTTGAACCCAGTTCCCTTTTGACTT
TAGGATTGCGATAGGTGTATTGAAGGAGACAACTAAAATGAATACAGTCC
AATAATTTAtgaatatttaatttttgataccTACCTCCAGCTAAGATCTT
CCATACTTAGCATATCAATCATTCCTTTGAAAATAtcgttcaaaatttca
aacttgttTGACAAATACTGTCATCAAAAGACATTTCCTTATCTAACTAT
ATCCAAAATGGTACCAAAAGTATGTTTAAGTTACCATAGTAattatttta
caaaaacaagactaaaaattttttttatttttactcaACTTTTATTTTAG
TAGAACGAAATTTTTTATCATGTGGTTTTGAAATGAAGGTAAGGTTCTTT
ACGCTTACACTCAATCGGCCAGATACTACCTTATTGGCCAAAACTtatag
tcggccttaattttagtcacctcgtcgaAATTTAGTCACTGAGGGctgac
taataattaagaccgactaaaaatttgggttATTTCTAAATTCacaagca
gatggaaaataggagaaagcttaaaattctagaaaataaggaaagcttaa
ttataaacttttaatttggcccaaatttttagttggcccaaattttagtc
ggccctagtttttagtcggccctaattttagtcacttagggccgactaag
ttttagCCGATaaggtaccttatcggggaaaaacgTTGCGGTTTTAATTA
GTCAGGGTTTAACTTTCGAGGGTGGATTTCATCGCCTGTAGacaatttcg
tcacttttctaAAAGACCAAAAtctcaaattcgtcactttccaGATCGAA
TTTAAATTTAGTCACATTTTGTCGACTCattttaaaaacttattttttcc
cAGAAGGCAGCATAATCCTCCCAGCttgcacacgacgttgtttcaacgtt
tatctaacgttcacaacgtccatataacgttaaatgaacgttgaaacaac
gttacgttgtgtgccagctggctGTATCTTCATAAGGAGGAAtgaaaaaa
tggagaaaaaactgTAAAGGTTAAAATATCGGGTGATCAAATGTcgagga
attttttaatacATATATCCACATTCTATTTTGCCATAGAATTACATTTT
CTTCGTTGTGCTTGGGTTGGCGTCGATTGTAACGTTTCCCCAAGGTAATG
GAAATAATATGTCTTACTTTACCCAGAACTCACTTGCCTGCTCTTGAAGA
TAAGATGACCTTTCCTTTCCATTTTTAATAATCATGTTGCAATCTTTTAA
TACGCATTTAACGACAAAACGTATTTTCCAGCTGGTGTATtgtattaaag
tctgtccagatataattggcagtggaaacaagaatgcctgtaacttttga
tagtcaaatataattatgaaatttttttttgcttgttttagagaatcaaa
agcgctatatttgaatgtatttttgtttgaaaaattcgcgatttttagcg
gtttaatttgcgattgtaaaaattgagcattttttctacttatgctataa
cgttcatttttacaccagtggtagttcaaccttaggttgagaagtttgtt
aaatttcaaggcaaacaaaagagtccttcggaagatataggacccgaaat
accccttggtagcactttctgtgaaatatcaaatctccaacttattacta
aaaacgggggtagtgatatgattgatgaaacagtttttcgatcataacac
attttacaatcTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNgaaaaaagctcaatttttacaatcacaa
attaaaccgctaaaaatcgcgaatttttcaaacaaaaatacatttaaata
tagcgcttttgattctctaaaacaagcaaaaaaaattttcataattatat
ttgactatcaaaagttacaggcattcttgtttccactgccaattatatct
ggacagactttagttcgaAATTAGTGGCAAAAATCACCTTTGTCAATAAG
GAACCGAATCAATTTTAAATGTTAACTTTAGCCAAATTTTATTCAACACA
TTCATAGTGTACCTTTGAAATGTTGCTTTTTAAACAAGACGCCCTGATGA
AATAGCTCATTATATACCAAATAATATTTCCCAACGCTTTTTATTTAGCC
CTGGCTTGTAAATACACGCGGATCCATATTGCTACATATGAAAATGACGT
CAACCTAATGACTGTCTACATTTTATGGGACGAATCGCAATGCCCTGGTA
CCAACAAATTCATTATATTCTTTCAAAAACAACTCTTTGGAGGAGCTCAT
CAGGCAAATATCGAAACACCAATCAGAGAAAATGGAAAGAAATTGTTACT
CCACGCTGACAGTGTTTATTTTGTACGTATGAACGCACTATACAACAGGA
TTATTTTCACCGGAAAAAATGGAGGTAATTATATATTAATTCTCTTGGAA
TCTTGTGATATAAGCATCCTTGTAAGCATTTTTGAGCCTTGTCAAGCTCT
CGAGCTAAGCATCTTCGAGTagcttgttttcaaatttttgtatgcttata
aaaaaatgtaaaagaaaaagcgtgtaacaagaacaagttaaaaacatttc
aaggctCTGCAGACTCTATAACGCCTCATTTTCTTTAGAATTtacacaaa
atggtgaaaataagaacaagctaagaacaattttaggcttaaaactcaga
aagttaaAAACACCTGAAGGCTTTGAAAatgaatgttcttataagaaaaa
cgtgtatatgcTGATATAGTTTTCGATGGGCtttctatttcaaaaacatt
ttaagtcCTTTGAAAGTTTTTCCCTCTCTGATTTTAGTCCTATCATATGA
AAATTTATGATACCACACTTATGAATATCTTCTCAACGAGAAGAAAGGGA
GATCCATTTGAagtaaaaagcttaaaaattaattcttttttggataaaat
ttaaaacatatatTTTAGTCGTTTCGGTGTCATCTGATCaccattcaatt
ttttttttcaatttttactgaTGATGGTGATCGGATGACACCGAAACgtc
taaatatattttattcaaataaaatgaaaacgcttctgTGTCTGAACTTT
acgttgaaaaaaaatattcaggaggatcaattaaattttgttttgttact
GCTGAATATTATATTAGGAAAGATTTCATCTTAAGTTCTATGTCATGATA
TTTTGATCACAcgaattgattgatttattacAGATTGTGAGCGTAAGCCA
TACTACCAACTTCTGACAGCCAATGGCAATAACCAACCAGAGGTAATTAA
TGTAATCAGACTGGTATAATAAGAAACTAAGTCCGAATATGAGCATCTga
cagggctgcaaataagccTCGGTCATCGGGTGCTTGACTGACTAAAAAAA
GGTGCTTGACTGACTGAAAACCATTTGTGTCGGTCACAGTCTGTAATTCT
ATTCATATTAGGGAACGTCTTTAATTGCATTTAAAGTTTCATGATCGACA
CACTTGAAATTCTTGTCTTTCTGAAAATCATCCTTAAATATTCTTAATGT
ATTCTCAGGTTAGGAACCTAAATTTTACATGTACCTAAAGCAATAATTAC
GTTTTGTGAAAGCTTTGAAATCCTTTGAAACTTTACTGGAGGATAATTTT
GCCAATTTCGTAGGTCACTCGTCAAGTTCCATGCTggtgaaagatatttt
taaaatttaggcTAATTCAATTATACGAATGATTTTTTAGATACATTCTT
GTAGCTCCTTTACTAACAATAAAACGCTACGCATTTTTGCTAGCACAATC
CAATTacatttccatacaggggggagGGGTGGACAAACCTTTTTAAGACA
AATATAAATTCTTAGAAATATATGTGGATACTCCCTGGAGAATGGCAAAA
TGTGGAAATGGAAATGTTCTTCCGCcacctgtatggatataaaatggaat
ggcccatttaaCTAACTGACTGACCAGGATTTCATAACACTTTTTGCCAA
AACATAATGGGCATAATTTGTCGTTTAGTAAATAACTCCATATAATATCA
ATTCATTATTATCCATAGGATTGGAGCTACAACTCTTCGATGTGGCAATT
AGAAGAATACAGAGAAGCACGCATTAGTTCTGGTTTAACCGGCTTAACCA
AGGTCAGTGAAAAAGCTAAGAATCGAAAATTCAATCAATTTTGTATTGGT
ACAAAGCGTGGCAATTATTTCCATTGGGTTAAAACTGGTTGTAACCAGAG
TGTATCTTTGAAGAGTGCTGTCCATGGTGGATGTACGTTCGACCAAGAAA
CAAGTTCCAACAATGCTAGTTTTGGACGAATGGTTAATC Coding sequence (CDS) from alignment at sc0000208:145629..150717+ >TCONS_00015261 ID=TCONS_00015261|Name=TCONS_00015261|organism=Clytia hemisphaerica|type=CDS|length=3330bp|location=Sequence derived from alignment at sc0000208:145629..150717+ (Clytia hemisphaerica) ATGAAGAATTACATTTTCTTCGTTGTGCTTGGGTTGGCGTCGATTGTAAC GTTTCCCCAAGCCCTGGCTTGTAAATACACGCGGATCCATATTGCTACAT ATGAAAATGACGTCAACCTAATGACTGTCTACATTTTATGGGACGAATCG CAATGCCCTGGTACCAACAAATTCATTATATTCTTTCAAAAACAACTCTT TGGAGGAGCTCATCAGGCAAATATCGAAACACCAATCAGAGAAAATGGAA AGAAATTGTTACTCCACGCTGACAGTGTTTATTTTGTACGTATGAACGCA CTATACAACAGGATTATTTTCACCGGAAAAAATGGAGATTGTGAGCGTAA GCCATACTACCAACTTCTGACAGCCAATGGCAATAACCAACCAGAGGATT GGAGCTACAACTCTTCGATGTGGCAATTAGAAGAATACAGAGAAGCACGC ATTAGTTCTGGTTTAACCGGCTTAACCAAGGTCAGTGAAAAAGCTAAGAA TCGAAAATTCAATCAATTTTGTATTGGTACAAAGCGTGGCAATTATTTCC ATTGGGTTAAAACTGGTTGTAACCAGAGTGTATCTTTGAAGAGTGCTGTC CATGGTGGATGTACGTTCGACCAAGAAACAAGTTCCAACAATGCTAGTTT TGGACGAATGGTTAATATGAAGAATTACATTTTCTTCGTTGTGCTTGGGT TGGCGTCGATTGTAACGTTTCCCCAAGCCCTGGCTTGTAAATACACGCGG ATCCATATTGCTACATATGAAAATGACGTCAACCTAATGACTGTCTACAT TTTATGGGACGAATCGCAATGCCCTGGTACCAACAAATTCATTATATTCT TTCAAAAACAACTCTTTGGAGGAGCTCATCAGGCAAATATCGAAACACCA ATCAGAGAAAATGGAAAGAAATTGTTACTCCACGCTGACAGTGTTTATTT TGTACGTATGAACGCACTATACAACAGGATTATTTTCACCGGAAAAAATG GAGATTGTGAGCGTAAGCCATACTACCAACTTCTGACAGCCAATGGCAAT AACCAACCAGAGGATTGGAGCTACAACTCTTCGATGTGGCAATTAGAAGA ATACAGAGAAGCACGCATTAGTTCTGGTTTAACCGGCTTAACCAAGGTCA GTGAAAAAGCTAAGAATCGAAAATTCAATCAATTTTGTATTGGTACAAAG CGTGGCAATTATTTCCATTGGGTTAAAACTGGTTGTAACCAGAGTGTATC TTTGAAGAGTGCTGTCCATGGTGGATGTACGTTCGACCAAGAAACAAGTT CCAACAATGCTAGTTTTGGACGAATGGTTAATATGAAGAATTACATTTTC TTCGTTGTGCTTGGGTTGGCGTCGATTGTAACGTTTCCCCAAGCCCTGGC TTGTAAATACACGCGGATCCATATTGCTACATATGAAAATGACGTCAACC TAATGACTGTCTACATTTTATGGGACGAATCGCAATGCCCTGGTACCAAC AAATTCATTATATTCTTTCAAAAACAACTCTTTGGAGGAGCTCATCAGGC AAATATCGAAACACCAATCAGAGAAAATGGAAAGAAATTGTTACTCCACG CTGACAGTGTTTATTTTGTACGTATGAACGCACTATACAACAGGATTATT TTCACCGGAAAAAATGGAGATTGTGAGCGTAAGCCATACTACCAACTTCT GACAGCCAATGGCAATAACCAACCAGAGGATTGGAGCTACAACTCTTCGA TGTGGCAATTAGAAGAATACAGAGAAGCACGCATTAGTTCTGGTTTAACC GGCTTAACCAAGGTCAGTGAAAAAGCTAAGAATCGAAAATTCAATCAATT TTGTATTGGTACAAAGCGTGGCAATTATTTCCATTGGGTTAAAACTGGTT GTAACCAGAGTGTATCTTTGAAGAGTGCTGTCCATGGTGGATGTACGTTC GACCAAGAAACAAGTTCCAACAATGCTAGTTTTGGACGAATGGTTAATAT GAAGAATTACATTTTCTTCGTTGTGCTTGGGTTGGCGTCGATTGTAACGT TTCCCCAAGCCCTGGCTTGTAAATACACGCGGATCCATATTGCTACATAT GAAAATGACGTCAACCTAATGACTGTCTACATTTTATGGGACGAATCGCA ATGCCCTGGTACCAACAAATTCATTATATTCTTTCAAAAACAACTCTTTG GAGGAGCTCATCAGGCAAATATCGAAACACCAATCAGAGAAAATGGAAAG AAATTGTTACTCCACGCTGACAGTGTTTATTTTGTACGTATGAACGCACT ATACAACAGGATTATTTTCACCGGAAAAAATGGAGATTGTGAGCGTAAGC CATACTACCAACTTCTGACAGCCAATGGCAATAACCAACCAGAGGATTGG AGCTACAACTCTTCGATGTGGCAATTAGAAGAATACAGAGAAGCACGCAT TAGTTCTGGTTTAACCGGCTTAACCAAGGTCAGTGAAAAAGCTAAGAATC GAAAATTCAATCAATTTTGTATTGGTACAAAGCGTGGCAATTATTTCCAT TGGGTTAAAACTGGTTGTAACCAGAGTGTATCTTTGAAGAGTGCTGTCCA TGGTGGATGTACGTTCGACCAAGAAACAAGTTCCAACAATGCTAGTTTTG GACGAATGGTTAATATGAAGAATTACATTTTCTTCGTTGTGCTTGGGTTG GCGTCGATTGTAACGTTTCCCCAAGCCCTGGCTTGTAAATACACGCGGAT CCATATTGCTACATATGAAAATGACGTCAACCTAATGACTGTCTACATTT TATGGGACGAATCGCAATGCCCTGGTACCAACAAATTCATTATATTCTTT CAAAAACAACTCTTTGGAGGAGCTCATCAGGCAAATATCGAAACACCAAT CAGAGAAAATGGAAAGAAATTGTTACTCCACGCTGACAGTGTTTATTTTG TACGTATGAACGCACTATACAACAGGATTATTTTCACCGGAAAAAATGGA GATTGTGAGCGTAAGCCATACTACCAACTTCTGACAGCCAATGGCAATAA CCAACCAGAGGATTGGAGCTACAACTCTTCGATGTGGCAATTAGAAGAAT ACAGAGAAGCACGCATTAGTTCTGGTTTAACCGGCTTAACCAAGGTCAGT GAAAAAGCTAAGAATCGAAAATTCAATCAATTTTGTATTGGTACAAAGCG TGGCAATTATTTCCATTGGGTTAAAACTGGTTGTAACCAGAGTGTATCTT TGAAGAGTGCTGTCCATGGTGGATGTACGTTCGACCAAGAAACAAGTTCC AACAATGCTAGTTTTGGACGAATGGTTAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00015261-exon-sc0000208-1491911889:145629..145661 | TCONS_00015261-exon-sc0000208-1491911889:145629..145661 | Clytia hemisphaerica | exon |
TCONS_00015261-exon-sc0000208-1510915933:145629..145661 | TCONS_00015261-exon-sc0000208-1510915933:145629..145661 | Clytia hemisphaerica | exon |
TCONS_00015261-exon-sc0000208-1575043694:145629..145661 | TCONS_00015261-exon-sc0000208-1575043694:145629..145661 | Clytia hemisphaerica | exon |
TCONS_00015261-exon-sc0000208-1491911889:146279..146316 | TCONS_00015261-exon-sc0000208-1491911889:146279..146316 | Clytia hemisphaerica | exon |
TCONS_00015261-exon-sc0000208-1510915933:146279..146316 | TCONS_00015261-exon-sc0000208-1510915933:146279..146316 | Clytia hemisphaerica | exon |
TCONS_00015261-exon-sc0000208-1575043694:146279..146316 | TCONS_00015261-exon-sc0000208-1575043694:146279..146316 | Clytia hemisphaerica | exon |
TCONS_00015261-exon-sc0000208-1491911889:147068..147122 | TCONS_00015261-exon-sc0000208-1491911889:147068..147122 | Clytia hemisphaerica | exon |
TCONS_00015261-exon-sc0000208-1510915933:147068..147122 | TCONS_00015261-exon-sc0000208-1510915933:147068..147122 | Clytia hemisphaerica | exon |
TCONS_00015261-exon-sc0000208-1575043694:147068..147122 | TCONS_00015261-exon-sc0000208-1575043694:147068..147122 | Clytia hemisphaerica | exon |
TCONS_00015261-exon-sc0000208-1491911889:148527..148802 | TCONS_00015261-exon-sc0000208-1491911889:148527..148802 | Clytia hemisphaerica | exon |
TCONS_00015261-exon-sc0000208-1510915933:148527..148802 | TCONS_00015261-exon-sc0000208-1510915933:148527..148802 | Clytia hemisphaerica | exon |
TCONS_00015261-exon-sc0000208-1575043694:148527..148802 | TCONS_00015261-exon-sc0000208-1575043694:148527..148802 | Clytia hemisphaerica | exon |
TCONS_00015261-exon-sc0000208-1491911889:149612..149670 | TCONS_00015261-exon-sc0000208-1491911889:149612..149670 | Clytia hemisphaerica | exon |
TCONS_00015261-exon-sc0000208-1510915933:149612..149670 | TCONS_00015261-exon-sc0000208-1510915933:149612..149670 | Clytia hemisphaerica | exon |
TCONS_00015261-exon-sc0000208-1575043694:149612..149670 | TCONS_00015261-exon-sc0000208-1575043694:149612..149670 | Clytia hemisphaerica | exon |
TCONS_00015261-exon-sc0000208-1491911889:150447..150717 | TCONS_00015261-exon-sc0000208-1491911889:150447..150717 | Clytia hemisphaerica | exon |
TCONS_00015261-exon-sc0000208-1510915933:150447..150717 | TCONS_00015261-exon-sc0000208-1510915933:150447..150717 | Clytia hemisphaerica | exon |
TCONS_00015261-exon-sc0000208-1575043694:150447..150717 | TCONS_00015261-exon-sc0000208-1575043694:150447..150717 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000208 | supercontig | sc0000208:145629..150717 + |
Blast
The following BLAST results are available for this feature:
|