TCONS_00015246 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015246
Unique NameTCONS_00015246
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length320

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015246 ID=TCONS_00015246|Name=TCONS_00015246|organism=Clytia hemisphaerica|type=transcript|length=320bp
TGAAAGTGgatatttgaaaaatggaaatgCAAATATAAAATACTTTTACA
GAATATAAAATATGACAGAAATTGACTTAATACACAATAAAttcttaaat
aaaaacaaaaacatttacaaaaatattgttACCAAACGAAGTAATACAAA
AATTATATTCAAATACTCAAAAGTTAGATTGCAAAATACTACAAAATATT
ACTGACTACATAACCACTTATAAAAACAATACTATTACATCAACCAGATT
CCTTCAAGGAAGCATAGCGTCAACCCCcgtgacttttttttttttggggg
gggggctagcTAAAATACAG
Run BLAST on NCBI

transcript from alignment at sc0000205:234283..234602

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015246 ID=TCONS_00015246|Name=TCONS_00015246|organism=Clytia hemisphaerica|type=transcript|length=320bp|location=Sequence derived from alignment at sc0000205:234283..234602 (Clytia hemisphaerica)
CTGTATTTTAgctagccccccccccaaaaaaaaaaaagtcacgGGGGTTG
ACGCTATGCTTCCTTGAAGGAATCTGGTTGATGTAATAGTATTGTTTTTA
TAAGTGGTTATGTAGTCAGTAATATTTTGTAGTATTTTGCAATCTAACTT
TTGAGTATTTGAATATAATTTTTGTATTACTTCGTTTGGTaacaatattt
ttgtaaatgtttttgtttttatttaagaaTTTATTGTGTATTAAGTCAAT
TTCTGTCATATTTTATATTCTGTAAAAGTATTTTATATTTGcatttccat
ttttcaaatatcCACTTTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008526XLOC_008526Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015246-exon-sc0000205-1491911889:234283..234602TCONS_00015246-exon-sc0000205-1491911889:234283..234602Clytia hemisphaericaexon
TCONS_00015246-exon-sc0000205-1510915933:234283..234602TCONS_00015246-exon-sc0000205-1510915933:234283..234602Clytia hemisphaericaexon
TCONS_00015246-exon-sc0000205-1575043694:234283..234602TCONS_00015246-exon-sc0000205-1575043694:234283..234602Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000205supercontigsc0000205:234283..234602 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.87622	1.24656	1.44738	1.41604	1.29292	0.34056	0.410871	0.384652	0.807913	3.33577	4.20911	2.12839	2.33797	1.54509	1.27028	0.194743	0	0.245898	1.01916	0.710987	0.617977	0.452141	0	0.666266	0.343119	0.918677	1.75283	3.27367	0	1.80696
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00015246 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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