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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015223 ID=TCONS_00015223|Name=TCONS_00015223|organism=Clytia hemisphaerica|type=transcript|length=2226bp
TTCAGATGaatgaaaaacgtaaaaataaaaataaaaaaagatactaacga
gaaaaaaattacagtCATGAAATACCGTTTATCAAGCGAACCGCTGATTT
TCTTCTACACCGTAATCTACACTATTAATTATACAGTACTTCCACAACTT
GTTGTCCGAAAAACATGTCATGCGCATGCGTACAATGAAACACTTTGCAG
CAATGAAGATTTCCTGTCCAAGAacgaaaacattaaaaaagaATCGACAA
CTTGGTGGTTCTTCTTACTTCTCGGATCTCTACTACCTTCCGTCTTTACA
GTCCTTATATGGGGACCCATCACCGACGTTATTGGGCGCCGTCACGCCAT
GACCATTGTGCCTTTCATCAACGGAATCAGGTCTTTGATTTATCTCATCA
ACTCGTATTATATGGATGCACATGTCGGGTATTTGTTATTTGGTTCGTTT
TTATCGTGTTTTTACGGTGAATTCCAAGGCGTAGTTGCGCTTTGTTACGC
CTATTTAGCGGATGTTACGACGGATCACCTGGACCAGCGTACCATGCGTA
TGGCGCTCATCGAGGCTAGTTTGTTTTTCGCTGGAATCCCGGCTGGTTTG
CTTTCGGGTTATTTACTGGAGAGTCTCGGATTTGTATCGGTTTTCGGATT
AAATATCGGGATCAATGTTTGCATTTTGTTGTATGTGATTTTTTACTTGC
CAAAGGATTCATCTTTTAAGTACGAGAAATTACCTGACAAAAACAATCTT
TCTAAATCGGAGCACTCAGCGGTCGCTGGACTCTCCTCAAGCGGAGAGGA
AGATAATATAGATAATTTGACTACTGGAAGCTCATCTTACGATAAAATCC
AAAAGACGTCGGGCGAAGACATTACATGCAACCAGCTATTTAATCCTTTC
TCGCACTTCGCCCACGTCTTTAAAGTTGTCACATCGCCATCATGCCGGAA
AATCGTCATCCCAGTCATATTTTCCTTCGGTTTTTCCGTTTGTGCTATAT
ATGGTGAACTGGTGGTACAAACACTCTACTTGACTAACCAGCCGTTCGCT
TTCAGCCCGCAGACCATAGGCTACTATTCGGCAGTACAGAGCGCTATTCG
TGGCTGTGGAGTCATCATAATGACCCAACTATCCTACCATATTTTCAATT
TATCTGACTTCTCCCTTATCGTAATAGGCATCATAAGTCAAATGGCATGT
TACATCTCAATCGGCTTATCCCGCACAATCTTACCTGTATTCCTGGTCAA
TATTGCGGGTCTTGGTATTCCCGTCGGCACGACAACCTTACGTTCTTTAG
CAACCAAAAATGTTTCTTCGGAAAATTATGGCGCTGTTTTGGCGTCTTTG
GAAGCAATGGATGTTCTAGCTGGCGTGTTAACCAATGCATCGACATTATG
GACTTATAATGTAACACTTCATGTTTACTCGGGGATCGCGTATTTTGCTT
TGGGTGGATTTTCCTTCTTATCACTGGTCTTCTTGGTTATTGCATATTGT
TTGAGACGAGATATTCATGATAATTCTCTATGATGAATTTGCAACTTTGG
TGAAAAATTTGGTAAGAGTTTTTTCTTAAGATTTAAAGATGGAAGAAAGT
ATTGGTAAGAATTTATTAGTTTCTTTAGatttaatatgtttttaaaaCCG
AATTTTATACGATTGTCTTATTTGTATTTCTACGGTTAtccatgatattc
atgacgtaatgttttctacgaaaagaccccggtttttgccagtagtggca
aaaattttatacaacttttgtctagtttaaatttgccattaccggctaaa
accggggtatttccgtagaaaacattacgtcatgaatatcatgaatagta
gCTTTTGCTTATCCCTAGATAGTTGGAAGTCAAGGAAAATAGACAGgttt
ccatttttttgattgtttgttgCTTTTAATTCCGTCATGGTGATAAATAA
TTTTATGCTGGAGTAAAATGGATCAACTtaaataaagaatttcaagaTCC
TTATTAtattattgggctattccattaaatttccatacaggggggtgaac
gaaccttttcaagtcaaaaaactatttttggAAATGTGTTGAAAATGGCA
TAATTTGCAAAAAGAcccttggaaaatttctttttggacctaccccggtg
gggtggaggtcctataaattaacccatgttcgttcgttcgttagtgtgtt
agttaccagcttttctcgagattggc Run BLAST on NCBI transcript from alignment at sc0000205:198827..201449- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00015223 ID=TCONS_00015223|Name=TCONS_00015223|organism=Clytia hemisphaerica|type=transcript|length=2623bp|location=Sequence derived from alignment at sc0000205:198827..201449- (Clytia hemisphaerica)
TTCAGATGAATGAAAAACGTAAAAATAAAAATAAAAAAAGATACTAACGA
GAAAAAAATTACAGTCATGAAATACCGTTTATCAAGCGAACCGCTGATTT
TCTTCTACACCGTAATCTACACTATTAATTATACAGTACTTCCACAACTT
GTTGTCCGAAAAACATGTCATGCGCATGCGTACAATGAAACACTTTGCAG
CAATGAAGATTTCCTGTCCAAGAACGAAAACATTAAAAAAGTAAGTCTAC
AAAATGTTACATTTTCATTTCGTTTCGTCATTATTGACTACTTGGAAGAA
TCTGTATTTTTCTGCGTTTTGAGTATTACGTCCTATTTGTCCTTTAAGCA
ATTTTTCTGTCAAAATTTCACCCAAATCTATTGGATTTAAACCTTAATTG
TAATTGCAACATTTAGAACATCCAAAATTGTAATGCAAGAAAAATCCAGA
GAGGTCTTATTCCGTTTCAGTATTCTGAATTACAGTTGACTCATGCGAAC
TCGAACGGGGAATCTCATTGTTTGAACTATAGAGATATTTGAATTATAAA
GAGTATTTTAAAAGAGGGTTTCTCCTGACGGAAGTTCGAATTATAATATA
AAGATTCGAATAATAGATTTTTTGTTATTATTTTTAGGAATCGACAACTT
GGTGGTTCTTCTTACTTCTCGGATCTCTACTACCTTCCGTCTTTACAGTC
CTTATATGGGGACCCATCACCGACGTTATTGGGCGCCGTCACGCCATGAC
CATTGTGCCTTTCATCAACGGAATCAGGTCTTTGATTTATCTCATCAACT
CGTATTATATGGATGCACATGTCGGGTATTTGTTATTTGGTTCGTTTTTA
TCGTGTTTTTACGGTGAATTCCAAGGCGTAGTTGCGCTTTGTTACGCCTA
TTTAGCGGATGTTACGACGGATCACCTGGACCAGCGTACCATGCGTATGG
CGCTCATCGAGGCTAGTTTGTTTTTCGCTGGAATCCCGGCTGGTTTGCTT
TCGGGTTATTTACTGGAGAGTCTCGGATTTGTATCGGTTTTCGGATTAAA
TATCGGGATCAATGTTTGCATTTTGTTGTATGTGATTTTTTACTTGCCAA
AGGATTCATCTTTTAAGTACGAGAAATTACCTGACAAAAACAATCTTTCT
AAATCGGAGCACTCAGCGGTCGCTGGACTCTCCTCAAGCGGAGAGGAAGA
TAATATAGATAATTTGACTACTGGAAGCTCATCTTACGATAAAATCCAAA
AGACGTCGGGCGAAGACATTACATGCAACCAGCTATTTAATCCTTTCTCG
CACTTCGCCCACGTCTTTAAAGTTGTCACATCGCCATCATGCCGGAAAAT
CGTCATCCCAGTCATATTTTCCTTCGGTTTTTCCGTTTGTGCTATATATG
GTGAACTGGTGGTACAAACACTCTACTTGACTAACCAGCCGTTCGCTTTC
AGCCCGCAGACCATAGGCTACTATTCGGCAGTACAGAGCGCTATTCGTGG
CTGTGGAGTCATCATAATGACCCAACTATCCTACCATATTTTCAATTTAT
CTGACTTCTCCCTTATCGTAATAGGCATCATAAGTCAAATGGCATGTTAC
ATCTCAATCGGCTTATCCCGCACAATCTTACCTGTATTCCTGGTCAATAT
TGCGGGTCTTGGTATTCCCGTCGGCACGACAACCTTACGTTCTTTAGCAA
CCAAAAATGTTTCTTCGGAAAATTATGGCGCTGTTTTGGCGTCTTTGGAA
GCAATGGATGTTCTAGCTGGCGTGTTAACCAATGCATCGACATTATGGAC
TTATAATGTAACACTTCATGTTTACTCGGGGATCGCGTATTTTGCTTTGG
GTGGATTTTCCTTCTTATCACTGGTCTTCTTGGTTATTGCATATTGTTTG
AGACGAGATATTCATGATAATTCTCTATGATGAATTTGCAACTTTGGTGA
AAAATTTGGTAAGAGTTTTTTCTTAAGATTTAAAGATGGAAGAAAGTATT
GGTAAGAATTTATTAGTTTCTTTAGATTTAATATGTTTTTAAAACCGAAT
TTTATACGATTGTCTTATTTGTATTTCTACGGTTATCCATGATATTCATG
ACGTAATGTTTTCTACGAAAAGACCCCGGTTTTTGCCAGTAGTGGCAAAA
ATTTTATACAACTTTTGTCTAGTTTAAATTTGCCATTACCGGCTAAAACC
GGGGTATTTCCGTAGAAAACATTACGTCATGAATATCATGAATAGTAGCT
TTTGCTTATCCCTAGATAGTTGGAAGTCAAGGAAAATAGACAGGTTTCCA
TTTTTTTGATTGTTTGTTGCTTTTAATTCCGTCATGGTGATAAATAATTT
TATGCTGGAGTAAAATGGATCAACTTAAATAAAGAATTTCAAGATCCTTA
TTATATTATTGGGCTATTCCATTAAATTTCCATACAGGGGGGTGAACGAA
CCTTTTCAAGTCAAAAAACTATTTTTGGAAATGTGTTGAAAATGGCATAA
TTTGCAAAAAGACCCTTGGAAAATTTCTTTTTGGACCTACCCCGGTGGGG
TGGAGGTCCTATAAATTAACCCATGTTCGTTCGTTCGTTAGTGTGTTAGT
TACCAGCTTTTCTCGAGATTGGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00015223-exon-sc0000205-1575043694:201210..201449 | TCONS_00015223-exon-sc0000205-1575043694:201210..201449 | Clytia hemisphaerica | exon |
| TCONS_00015223-exon-sc0000205-1575043694:198827..200812 | TCONS_00015223-exon-sc0000205-1575043694:198827..200812 | Clytia hemisphaerica | exon |
| TCONS_00015223-exon-sc0000205-1510915933:201210..201449 | TCONS_00015223-exon-sc0000205-1510915933:201210..201449 | Clytia hemisphaerica | exon |
| TCONS_00015223-exon-sc0000205-1510915933:198827..200812 | TCONS_00015223-exon-sc0000205-1510915933:198827..200812 | Clytia hemisphaerica | exon |
| TCONS_00015223-exon-sc0000205-1491911889:201210..201449 | TCONS_00015223-exon-sc0000205-1491911889:201210..201449 | Clytia hemisphaerica | exon |
| TCONS_00015223-exon-sc0000205-1491911889:198827..200812 | TCONS_00015223-exon-sc0000205-1491911889:198827..200812 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000205 | supercontig | sc0000205:198827..201449 - |
Blast
The following BLAST results are available for this feature:
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