TCONS_00015217 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015217
Unique NameTCONS_00015217
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2200

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015217 ID=TCONS_00015217|Name=TCONS_00015217|organism=Clytia hemisphaerica|type=transcript|length=2200bp
CGATTTTTGAACAACCAGGCCCAGCTGTTTAGAATATAATTCATCATTAT
CATAACAATATCTGATACCAAATGACACCTGTCTACCTTGTTCCCTAATC
ACTTATAATGTctcttttaatctttttttattctctaacagggaaaaaat
taaaagataagATGTCACTTGAATCTCTTTCGCGATATGATGATGCTGAA
GACGAGATCAAAGATGAAGACCATGATTTAGTTTTACAAACCAAGAAAAG
TCTAGAGGCTATTCGTCCCCCATCAAGACCTGTATCTGATGCTGAGAGTA
TCGGTGAACAGAGCAATAAACCAAAGAGTTTAGTGTCTTATTTTGGAGAT
GCTTACGGTTCTAGtagtgaaagtgaaaatgatgatTCTGATGTAAATAC
AAGAACAACTGTAGTTAACCTGGGTTTACATGATGGTCAAGCATCCTCTC
TTGAGAGTGGTTCACCTGCAACCATAGATCTTGATACAGAGGGTGGTATT
CGTGACAATTTAGATGATGTTCGCTTGCCACCTCAGCCTGAAGGAAGGTG
CTCTAAATCATTacaagagaaaattttgaaaatgtacgAACGTAAGATGG
CAGGTATGGATGTGAATGAGTATGTACAGAAGAAAAAGAACTTTCGGAAC
CCAAGCATTTATCAGAAACTTGTCAGTTATATAGGTATTGATGAACATGG
CACAAACTTCCCAAAACATATTTACGATCCCTCCATATGGGGACCTGAGT
CATATTACGAGGAACTTGCCAAAGCTCAAAAAGAGTACAACGAcaagaaa
gagaaagaaaagaataaaGCTAATAATCGAGCCAAAGTTGAATTTGTGTC
GGGAACTAAAAAACCACCTAGTACAGCGCCACTAGCAACTACTGCTGGCT
CAGCTGTACctgaaaagaaatcaaaatgggATCAAGGCCCTGGTAAAAAG
TAACTTTTAAACCAGAGCGTTTCTTCAGGTTTGTGTTCTACTCAAGCAAA
TGAataatcaatatttttgaaCTGGAATGGTTAATTGTCTGATGATTTTG
GATACTGAATATTATTATCGTCTTTTTTTGAAGACTAACAAAGAGTATGG
AAATATTTATCCATCCAATGTGTGAGACAAATAAACAGCTTGATCTGAAA
ATGAGGTTAGTCATTgcttttcatagaatttctgtgaaatatatgtgaaa
tttataaaatttccttaaaaaccATCTACAGTGCTCAACCATGATCCATG
GGTCCCCCAGGGTTCAGGTACCCCAAAATAGAATTCTAAAGAAGCCCCCC
TCCCCCAACTTTGAGCTACCCCATTGGTCAGCAAATATGTTCTTCTCCTT
GCGAGACTAGGTTTAAAGTACAAGAAGCAAACTGGGTGAAAAGGGAAAGA
CAAACAAAGTTATAAAGTCTTCTGAATGAAAAGGTTcgattcaaaattgg
aaaattgggttAGTCAAGGAAAAtacttcatacaaaaacaacagcccCCG
CCCCCACTAATGAAAATGCAGGTATCTCCAAACATATCAAGTACTCCCTG
AATTTAAAGAATACTTCCAGGTATCTGGCTACTAACACTTATTTTTAGGT
ACCTCCAAATTTCTGGGGGGAGGGGTGGTGGACCATATGTGATCATATAC
CTGACCAACCTAACTCACAGAAcatatctttgttgttttttttgtaaatt
agtTGTCAAGCAGACTTTGTAATTATAGATTGTATTGTTCAAAAGGAAAC
CCTTTTAGTTTTATTAATCTTAAAAGTATGACTTTGATTTTGGATACTTA
ATTTTCCTTCTCGTCCAAAGGTTGGGAGAACCATCTAACAATTTAATTTG
ATATCCAAATTCGATACCCCTAGGAATTTGAGGTGTACCTAGCATTTATG
AGTCTCTTAAGGTAAAGCACAATGACTCCATCATACATAAACATCCATTG
ATGAGCATAATCATCAACTTATTATAAGAAGCTTATAAAACCACTTAGCT
AAGCATTGAGTCTTCTAAAAatacttcaaacaaaaattgaaaatttttaa
tcctGACATCCAGaccagattttctatttttggtTGTTCATCAATTGTCA
AGTAGActtattgtattgtattgttaAACCcaaacattttcatcttttAG
TTTTTATCAATTTGCAGCACAACCTTATTTTTGGATACTTGTTTTCTTTC
Run BLAST on NCBI

transcript from alignment at sc0000205:59465..61664-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015217 ID=TCONS_00015217|Name=TCONS_00015217|organism=Clytia hemisphaerica|type=transcript|length=2200bp|location=Sequence derived from alignment at sc0000205:59465..61664- (Clytia hemisphaerica)
CGATTTTTGAACAACCAGGCCCAGCTGTTTAGAATATAATTCATCATTAT
CATAACAATATCTGATACCAAATGACACCTGTCTACCTTGTTCCCTAATC
ACTTATAATGTCTCTTTTAATCTTTTTTTATTCTCTAACAGGGAAAAAAT
TAAAAGATAAGATGTCACTTGAATCTCTTTCGCGATATGATGATGCTGAA
GACGAGATCAAAGATGAAGACCATGATTTAGTTTTACAAACCAAGAAAAG
TCTAGAGGCTATTCGTCCCCCATCAAGACCTGTATCTGATGCTGAGAGTA
TCGGTGAACAGAGCAATAAACCAAAGAGTTTAGTGTCTTATTTTGGAGAT
GCTTACGGTTCTAGTAGTGAAAGTGAAAATGATGATTCTGATGTAAATAC
AAGAACAACTGTAGTTAACCTGGGTTTACATGATGGTCAAGCATCCTCTC
TTGAGAGTGGTTCACCTGCAACCATAGATCTTGATACAGAGGGTGGTATT
CGTGACAATTTAGATGATGTTCGCTTGCCACCTCAGCCTGAAGGAAGGTG
CTCTAAATCATTACAAGAGAAAATTTTGAAAATGTACGAACGTAAGATGG
CAGGTATGGATGTGAATGAGTATGTACAGAAGAAAAAGAACTTTCGGAAC
CCAAGCATTTATCAGAAACTTGTCAGTTATATAGGTATTGATGAACATGG
CACAAACTTCCCAAAACATATTTACGATCCCTCCATATGGGGACCTGAGT
CATATTACGAGGAACTTGCCAAAGCTCAAAAAGAGTACAACGACAAGAAA
GAGAAAGAAAAGAATAAAGCTAATAATCGAGCCAAAGTTGAATTTGTGTC
GGGAACTAAAAAACCACCTAGTACAGCGCCACTAGCAACTACTGCTGGCT
CAGCTGTACCTGAAAAGAAATCAAAATGGGATCAAGGCCCTGGTAAAAAG
TAACTTTTAAACCAGAGCGTTTCTTCAGGTTTGTGTTCTACTCAAGCAAA
TGAATAATCAATATTTTTGAACTGGAATGGTTAATTGTCTGATGATTTTG
GATACTGAATATTATTATCGTCTTTTTTTGAAGACTAACAAAGAGTATGG
AAATATTTATCCATCCAATGTGTGAGACAAATAAACAGCTTGATCTGAAA
ATGAGGTTAGTCATTGCTTTTCATAGAATTTCTGTGAAATATATGTGAAA
TTTATAAAATTTCCTTAAAAACCATCTACAGTGCTCAACCATGATCCATG
GGTCCCCCAGGGTTCAGGTACCCCAAAATAGAATTCTAAAGAAGCCCCCC
TCCCCCAACTTTGAGCTACCCCATTGGTCAGCAAATATGTTCTTCTCCTT
GCGAGACTAGGTTTAAAGTACAAGAAGCAAACTGGGTGAAAAGGGAAAGA
CAAACAAAGTTATAAAGTCTTCTGAATGAAAAGGTTCGATTCAAAATTGG
AAAATTGGGTTAGTCAAGGAAAATACTTCATACAAAAACAACAGCCCCCG
CCCCCACTAATGAAAATGCAGGTATCTCCAAACATATCAAGTACTCCCTG
AATTTAAAGAATACTTCCAGGTATCTGGCTACTAACACTTATTTTTAGGT
ACCTCCAAATTTCTGGGGGGAGGGGTGGTGGACCATATGTGATCATATAC
CTGACCAACCTAACTCACAGAACATATCTTTGTTGTTTTTTTTGTAAATT
AGTTGTCAAGCAGACTTTGTAATTATAGATTGTATTGTTCAAAAGGAAAC
CCTTTTAGTTTTATTAATCTTAAAAGTATGACTTTGATTTTGGATACTTA
ATTTTCCTTCTCGTCCAAAGGTTGGGAGAACCATCTAACAATTTAATTTG
ATATCCAAATTCGATACCCCTAGGAATTTGAGGTGTACCTAGCATTTATG
AGTCTCTTAAGGTAAAGCACAATGACTCCATCATACATAAACATCCATTG
ATGAGCATAATCATCAACTTATTATAAGAAGCTTATAAAACCACTTAGCT
AAGCATTGAGTCTTCTAAAAATACTTCAAACAAAAATTGAAAATTTTTAA
TCCTGACATCCAGACCAGATTTTCTATTTTTGGTTGTTCATCAATTGTCA
AGTAGACTTATTGTATTGTATTGTTAAACCCAAACATTTTCATCTTTTAG
TTTTTATCAATTTGCAGCACAACCTTATTTTTGGATACTTGTTTTCTTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008509XLOC_008509Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015217-exon-sc0000205-1575043694:59465..61664TCONS_00015217-exon-sc0000205-1575043694:59465..61664Clytia hemisphaericaexon
TCONS_00015217-exon-sc0000205-1510915933:59465..61664TCONS_00015217-exon-sc0000205-1510915933:59465..61664Clytia hemisphaericaexon
TCONS_00015217-exon-sc0000205-1491911889:59465..61664TCONS_00015217-exon-sc0000205-1491911889:59465..61664Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000205supercontigsc0000205:59465..61664 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
9.98428	9.75599	9.26637	10.5992	22.9545	16.7627	16.8541	16.3148	6.37851	8.94103	5.1611	5.28535	4.19635	3.81523	4.12622	3.18547	5.77163	4.01866	3.22772	4.17406	5.03502	5.50148	9.0094	7.28664	7.92948	8.68553	5.87245	4.70608	8.39209	8.11532
Blast
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BLAST of TCONS_00015217 vs. Swiss-Prot (Human)
Match: S30BP (SAP30-binding protein OS=Homo sapiens GN=SAP30BP PE=1 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 6.955e-31
Identity = 53/90 (58.89%), Postives = 71/90 (78.89%), Query Frame = 3 
Query:  513 DDVRLPPQPEGRCSKSLQEKILKMYERKMA-GMDVNEYVQKKKNFRNPSIYQKLVSYIGIDEHGTNFPKHIYDPSIWGPESYYEELAKAQ 779
            D++++PP+P GRCS  LQ+KI K+YERK+  GMD+N  +Q+KK FRNPSIY+KL+ +  IDE GTN+PK ++DP  W  +SYYE LAKAQ
Sbjct:  115 DEIKIPPEPPGRCSNHLQDKIQKLYERKIKEGMDMNYIIQRKKEFRNPSIYEKLIQFCAIDELGTNYPKDMFDPHGWSEDSYYEALAKAQ 204
The following BLAST results are available for this feature:
BLAST of TCONS_00015217 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
S30BP6.955e-3158.89SAP30-binding protein OS=Homo sapiens GN=SAP30BP P... [more]
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