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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015206 ID=TCONS_00015206|Name=TCONS_00015206|organism=Clytia hemisphaerica|type=transcript|length=2008bp
aaaaaaattagttaaatatataaaatttttggaGTTTTTGATGTTTTACG
AAGAAATCAATCATATGTAATGTaaaTGGAATGGTTAGTCCCTCATATAG
CACGTATAGATAATTTCTGCAACAAACTTGAAACCGGGCAGAAAACATAT
CTCAACATTTCCCGTGACCGCGCCACATACTACGAACAACGAGCTCAATT
ATCACGTGATTATTTACATCGCTTAAGAGAATCTTCCGATACCGACGAGA
ATAACAACATGAGAGAAATCGAAGAAGTCGATGTTTTGAAAACATCTGAT
GATGGCGGTTCCGCATTCGAAATGAGTCCCTCCCAGGAAAATAGTTTTGG
GTCGTCACATTCTGGTAGAACGTCACCCGAGATTGATCTTCAAGGTCAAA
TAAAGAGATATAATGAAATAATGCAAGCTAAAGCAAAGACATTACCTGTT
TCTGTCATTGTTTCCGATCACACGTTCACCAGCTCTGCACCCTCACCTAC
GTCCAGTATCACAGGAAGTGAAAGTTCACGCCTTGAGGGCGATATGAATA
ATATCGGACGCCCCAAATCATACAATTACAAACCCGCCCCAATGGTACGG
AAATCGGAACGTCGTTTTATAAATGCGGAACAGAAGGATCAAAGTTATTG
GGAAAGGCGTAAACGTAATAACGCGGCGGCCAAAAAATCCCGCGAGTCAC
GCCGCGAGAAAGAAATCGAGGTTAGCCGACGTTGTGACGCTTTAGTCAAA
GAAAACGAAGGTATGAAATTTACTATCATGAACCTACAAGAACGTAATAC
ACAAATGGAAAATACCATGAAAATCTACAAAGACATTTtagtcaaaaata
atttgatttgatttgatttttttcaaatttgttggTCTCATTTATACAAC
CCATTTCAATGTATGAGAACTTGTATAATATGACATGAATGATCGAGGCA
AGAGGAGGTGATGACATTTAATCGAGACAAAATACTTTGTGAATTTTGAC
CAATACCACAAACATTGAGAAGTATATGTCATAAATTACCGTGTCCCAAC
TGTTTATCAGACTTTGAGGGCGGGGAATCGCCATTCTTCAACAACGCCCG
TATGAACAGGATCATGGAGGCCGCCCCCTGATAAACAACACTATTTCATG
TCACACAAATATCGCTATCAATCCCCGGGGctaatatcaaaatatcatcG
ACGTTTTCTTTTGGATGTTATAAATATTTAGACAATCAAACACAAAGACA
ATGGATAAAGCCAAGGGACGAGGTTGAGCAAATAAATGATATTTGTTAGT
TTGTGCAGAAAAGGAAGTaaccaaaacatttaaaactgACAGCGCATTCT
CAGCCGCAAGACAAAAAAAACCCTgattggaaaagaaaaataaatatttg
ggCCCTGTAAATATTATATCCAAATTTTTATTAGTATTGACGATAATTTT
CTTAGTGTTTTACTTTACTTTATAGGACTGGTTCATCTATTAGATGAGAA
GTAATATTTCCATTCAAGGGGAAAAATCTACGAGATCTGCCAGTCTCCTT
TAACCTTTTTCTGTTACAAACCCTGAAAAAAAtcttaaacacccctgtgt
cacttCCACCGAAAGATTTGACAAATATTATTTTCGTCCCCGATGGGGAA
ATTTCTATCCCTattgggattttgatagaaatctTTATACCTCAGCCAGA
tctatgagacaggggtgttccaCCAGGtttatgagacaggggtgttccac
cagggctatgagacaggggtgttcttcACTTCACTGTTGtttcttttttc
gaaattaTCTTTTGTTGAtattgtaaattattttgaacatTATATCAGTA
TTTTAAAGGTATTATTTTAAGTGCTATTTGCTCACGAAAGTCTTTAATAA
GAATAAAacagaaattcttttaaataattgaagaaaaaaaaaccgtaAAT
CTTTTTAAGGTTCTGGACCTCCTTGAATTAAGGCTGAATTCTCATTTGGT
ATTATCGA Run BLAST on NCBI transcript from alignment at sc0000205:278086..282817+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00015206 ID=TCONS_00015206|Name=TCONS_00015206|organism=Clytia hemisphaerica|type=transcript|length=4732bp|location=Sequence derived from alignment at sc0000205:278086..282817+ (Clytia hemisphaerica)
aaaaaaattagttaaatatataaaatttttggaGTTTTTGATGTTTTACG
AAGAAATCAATCATATGTAATGTGTAAGTAAATTTTTGTTCTTCCTAATC
AGAataaattacatttttttttatataagaacattcaaaatcttATGCCT
AAATAttatcttaaaatgttcttattttcaccattttatgagtattgtTG
TGCGATTTTCTAAAAAGAATTGGGTGTTTTACGTtctgcgaagccttaaa
atgttcttaataaactttttcttaaaatttcggcCATccaaaccttatgt
tcttacatgatttgttcttacaaaaaaacgtatatttaaaaaaaacagag
GTGTAATTACaggttttcttataaaaaatttacaCTCTAACTGAGTGTGA
GCAAacccaacttttttttatgagaacaacgaggctcaaaatcaataaaa
aataagaacaattaaaaaaataacattcGGAGCTTGGAATTGCTTAATTT
CAACAGGAGTTTTACGGATCATATATGTATAATCCGTTATAAAGCTtaaa
aatacatctttttggGACTTcgctggaggtcctataaattaaccgatgtt
cgTCCATCATCTTGCGATTggcttattagttttttctaatttttcttaaa
attcggtCATTCCAGACTAAAACTTCATATATACATATTCTCTGACCTGC
TCATTGCTTCTATAAAACCAAATCTTTTTTCGGTATAGGAGTCTATAAAT
TTGAATATAGGAATTAAGAGAATCTTTGAACCCTTATCGGGACATTTTAC
TGACATTTAGCATtatcaatgacaaaaatttatGCCTTTTGGAAGTTTTC
TTtttggcattcttagcttgagtagcaaaattccatgatcgtgatattct
tagcatattcttaattttttggccattttcatcatggacattcttataaa
gtgtattcttattaaaaaaaagcatgtatatACCCGTAATCCATCCATGT
GCCTGGGTACCCCCAGCCCCGGTTATATGTAATGATAACTATTTTCTCAC
GTGtgaattgaatttttgaaatctgtCTTCACAGATCAGATTTCTGTTTC
GGCCTGTGCATCTCGTCTGTAGCACGTTTAATGGTGTAATATCTCGTGAA
ATTAATGATATAGAAATGAGTATAAACATAAGTCCTGAGAAGGACGAAAC
ACCTGTCTGCGGATAAATATCCTTATATGATATTCGAAATAATATCTGGT
ATTTAGATTAGACACACgcaagctggcacacaacgctgttttaacgtttt
tataacattcacaacgtccatataacgttagataaacgttgaaatgttgt
gtgccagttgggaaAGGAGTACAAGTATTTgagtagaaatatttttgtgt
ctGTATCCTTAAGCGATACGAAACTGTAatgtctgaacatggtctaaata
aACCCCTGGAATGGGGTTGTTTATAATCGGTGTAATACAGTTATATAAGG
CTGTTATATGATAACATGATAATTGTTACGTTATAATCCGTGTAATACAG
TTATAAGGCTGTTATATGATAACATGATAATTGTTACGTTTATAATCCGT
GTAATACAGTTATAAGGCTGTTATATGATAACATGATAATTGTTACgaga
taatatcagtttgtaaaaactgaaaaaaaattaagaaattacgattttac
attttattttttacttattttctaCTATGTTTGAATTAGTCCTCCTAGCT
TGCAAGACTACTaaatttgtgaaattttgcGAATCTTCAAACACAATAGT
TATGTCATCATCGTATAAACACATTATTgtggcttaaaacttaaaaagtt
aagaacatccgaaagcttcaaaaatttcttatgttaaaaacgtttataaa
aaaacttttattatctGATTCTTGTTTTGTATGTATTTCTTTGAATGAAG
AATGCAGTATTGACACTTTCTGAATAGTGAGGATTCTCAAGGCTGAATAA
TGGTGATGAACAAATTGCATAACTTGTTctgattctttttttttgaaaca
ttcaTTTATTTAAAGAAAGTTATTTTATTTCGAACTTTTCTGGTGTAGTG
CAATGATTCGACTATGATTGATTTTTGATTCCTTTGTTCGCTAGTAGACG
AAGTTATcttccgttacagtgatagtataAAGGtcgaaaaaaaggaagaa
attttggcgggaatttaatttggcggatggccggaAAAGTCTTTTAGAGT
GAATTTAACTTGGCAGATgaacgaaaaaactaaatttggcgggaattcaa
ttttgcgtttgctgaaaaatttatccttaaaatggcgtaaaaacagcaca
aaaaaatgcaaaataaccttatagagatcatattttcaaaaaacacttct
ggccaaatccgccaaattttcttccgccaaaatttctacCTTTAAGGTAT
GGAGACGGATTTAGAGGGTGTTGCTAACTGGAGGGACAATAAAAATTGAG
GCTCGAGTACTAGAGACTCCAGTGTATTGATATattctttatttcttctt
ttagaaaTGGAATGGTTAGTCCCTCATATAGCACGTATAGATAATTTCTG
CAACAAACTTGAAACCGGGCAGAAAACATATCTCAACATTTCCCGTGACC
GCGCCACATACTACGAACAACGAGCTCAATTATCACGTGATTATTTACAT
CGCTTAAGAGAATCTTCCGATACCGACGAGAATAACAACATGAGAGAAAT
CGAAGAAGTCGATGTTTTGAAAACATCTGATGATGGCGGTTCCGCATTCG
AAATGAGTCCCTCCCAGGAAAATAGTTTTGGGTCGTCACATTCTGGTAGA
ACGTCACCCGAGATTGATCTTCAAGGTCAAATAAAGAGATATAATGAAAT
AATGCAAGCTAAAGCAAAGACATTACCTGTTTCTGTCATTGTTTCCGATC
ACACGTTCACCAGCTCTGCACCCTCACCTACGTCCAGTATCACAGGAAGT
GAAAGTTCACGCCTTGAGGGCGATATGAATAATATCGGACGCCCCAAATC
ATACAATTACAAACCCGCCCCAATGGTACGGAAATCGGAACGTCGTTTTA
TAAATGCGGAACAGAAGGATCAAAGTTATTGGGAAAGGCGTAAACGTAAT
AACGCGGCGGCCAAAAAATCCCGCGAGTCACGCCGCGAGAAAGAAATCGA
GGTTAGCCGACGTTGTGACGCTTTAGTCAAAGAAAACGAAGGTATGAAAT
TTACTATCATGAACCTACAAGAACGTAATACACAAATGGAAAATACCATG
AAAATCTACAAAGACATTTtagtcaaaaataatttgatttgatttgattt
ttttcaaatttgttggTCTCATTTATACAACCCATTTCAATGTATGAGAA
CTTGTATAATATGACATGAATGATCGAGGCAAGAGGAGGTGATGACATTT
AATCGAGACAAAATACTTTGTGAATTTTGACCAATACCACAAACATTGAG
AAGTATATGTCATAAATTACCGTGTCCCAACTGTTTATCAGACTTTGAGG
GCGGGGAATCGCCATTCTTCAACAACGCCCGTATGAACAGGATCATGGAG
GCCGCCCCCTGATAAACAACACTATTTCATGTCACACAAATATCGCTATC
AATCCCCGGGGctaatatcaaaatatcatcGACGTTTTCTTTTGGATGTT
ATAAATATTTAGACAATCAAACACAAAGACAATGGATAAAGCCAAGGGAC
GAGGTTGAGCAAATAAATGATATTTGTTAGTTTGTGCAGAAAAGGAAGTa
accaaaacatttaaaactgACAGCGCATTCTCAGCCGCAAGACAAAAAAA
ACCCTgattggaaaagaaaaataaatatttgggCCCTGTAAATATTATAT
CCAAATTTTTATTAGTATTGACGATAATTTTCTTAGTGTTTTACTTTACT
TTATAGGACTGGTTCATCTATTAGATGAGAAGTAATATTTCCATTCAAGG
GGAAAAATCTACGAGATCTGCCAGTCTCCTTTAACCTTTTTCTGTTACAA
ACCCTGAAAAAAAtcttaaacacccctgtgtcacttCCACCGAAAGATTT
GACAAATATTATTTTCGTCCCCGATGGGGAAATTTCTATCCCTattggga
ttttgatagaaatctTTATACCTCAGCCAGAtctatgagacaggggtgtt
ccaCCAGGtttatgagacaggggtgttccaCCAGAtctatgagacagggg
tgttccaccagggctatgagacaggggtgttccaCCAGGgttatgagaca
ggggtgttccaCCAGGtgtatgagacaggggtgctcCACCAGgtttgtga
gacaggggtgttccaCCAGGtgtatgagacaggggtgttccaCCAGAttt
atgagacaggggtgttccaTCAGGTTTATGAGGCAGGGGTGTTCCACCAG
Gtttatgagacaggggtgttccaccagggctatgagacaggggtgttctt
cACTTCACTGTTGtttcttttttcgaaattaTCTTTTGTTGAtattgtaa
attattttgaacatTATATCAGTATTTTAAAGGTATTATTTTAAGTGCTA
TTTGCTCACGAAAGTCTTTAATAAGAATAAAacagaaattcttttaaata
attgaagaaaaaaaaaccgtaAATCTTTTTAAGGTTCTGGACCTCCTTGA
ATTAAGGCTGAATTCTCATTTGGTATTATCGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00015206-exon-sc0000205-1491911889:278086..278158 | TCONS_00015206-exon-sc0000205-1491911889:278086..278158 | Clytia hemisphaerica | exon |
| TCONS_00015206-exon-sc0000205-1510915933:278086..278158 | TCONS_00015206-exon-sc0000205-1510915933:278086..278158 | Clytia hemisphaerica | exon |
| TCONS_00015206-exon-sc0000205-1575043694:278086..278158 | TCONS_00015206-exon-sc0000205-1575043694:278086..278158 | Clytia hemisphaerica | exon |
| TCONS_00015206-exon-sc0000205-1491911889:280640..282292 | TCONS_00015206-exon-sc0000205-1491911889:280640..282292 | Clytia hemisphaerica | exon |
| TCONS_00015206-exon-sc0000205-1510915933:280640..282292 | TCONS_00015206-exon-sc0000205-1510915933:280640..282292 | Clytia hemisphaerica | exon |
| TCONS_00015206-exon-sc0000205-1575043694:280640..282292 | TCONS_00015206-exon-sc0000205-1575043694:280640..282292 | Clytia hemisphaerica | exon |
| TCONS_00015206-exon-sc0000205-1491911889:282536..282817 | TCONS_00015206-exon-sc0000205-1491911889:282536..282817 | Clytia hemisphaerica | exon |
| TCONS_00015206-exon-sc0000205-1510915933:282536..282817 | TCONS_00015206-exon-sc0000205-1510915933:282536..282817 | Clytia hemisphaerica | exon |
| TCONS_00015206-exon-sc0000205-1575043694:282536..282817 | TCONS_00015206-exon-sc0000205-1575043694:282536..282817 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000205 | supercontig | sc0000205:278086..282817 + |
Blast
The following BLAST results are available for this feature:
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